Carg27702 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27702
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 7153873 .. 7155626 (+)
RNA-Seq Expression	Carg27702
Synteny	Carg27702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTTCCAAGTGCGAAAAACCCTTGGCGAGGTGGGCCGGTAAGTGTTTAAATCTTATTAGCATATTTTCAACAATTTCTAATCTATGGATAAAAGGTTTATCTTGCTCTTTTATTTGTTCCTCTTTGCATTCATTCCATTTGGCATACAATACAGAGACTATGCTTACCACATATGCTACCTCCTACCAAGATTAAACCGCCTTTACCTCATATGTTTAGCTCACGATTTTACATTGTTCTGATCATAAACAATGTGTTTACACCTAGTCTATGGTTTAAGAAGATTCCCGTATAATCAGGTTGATCAAAGCAAGTAATTTTGTTTATTACCAATACTATGGAGTCGTTCTAATTTTCAGCTAGCCAATAGACGCGAAGGAACCATTATACTGCGGTTGTCCGGATTTTGCTTGTCTATTAAGTACATCCAGTGTGTCATTCAACATCCATCAGCAACATCCGTCTATGAAAACATTTTCTTTAACTTGTAATATTTTTTTGAATGTGTATCACGTCCGACTTTGTGGTAGGATCACGAGGTCGCTTAACATTCGTAGTCAAAAGCACGTCTCTGGTAGTTCAATTGATCATTCAAAATGGTGTCTGCTTGAGACTAACATTTGCTTGGCTCATTAGAAGAGTTTTGTGATAATTTAGGCTAGTAGTTTGTGTCACTGTTTGCCAGCTTTAACAATACCATATCCACTCCGTATACAATGTCGTTCTTTCCTTGTTTGATTGCATTCTTGGATAACAGAAATTCGACCAGTTTTTTATGTTTCCGGCTGCTGCCGTGATAGAATGGAGCAACACATTATATATTCCAATATCTCTAATATAACATCCTATATTCTATGCACACACGAGCTTTCTCCGTGTCCGAAATGCGAGAATGCACTCTCAATCTTAACATCTATTCTTTTTCTTTCAATGTATTCCATATTAGACTCTATGTCATACCCGACCAGGCCCTCTTTATGTCTACGCAAGTATGGTGTGTTGTTGGCGGTGATTTTAACATTCTCGTATCAACAAGAGATGTGCGACATAATCTATCAAACATTTCATATCAATTAGTGAAGTCTTTTTAGTAATTATAATTTTGTATGCTGACTTTATACTCGTGAATGGTACAACTTTGAGCTTGGATTTAGACTCGTAAAGTACAATTCCTTTTGAAGCTTAGGGGTTTAAGATGCGCAAAGGTACAACCTTTTGACCGACTGAGAAGGTACGATCTTTTGAGCTTCATCGCGCGTGTAGCCACGGTACAAACCTTTTGAGCTAATAGGGGATTATCTCATGGTACAAAGACCAACAAGTAATAACCAATTGACCCAATTGTACTTGGCAAATTTCGAGAGAACGTGACAAACTAATGACTTTATGCCTCACATTATAGCATTAAATAGTATTTTAAGAGTATATTTAAATCAAACTCATTTTGATAGAGAGAATATTAATAATGGATTAAGCACAAATATTATCAAGAACATTGGCCTCAATTTTGTATTCCAATTTTAGCAATTGATGCTCATTGAAAAAGAGGAAAGAAACAAACGTTTGGCTGTAGAGTTGTTATTTTTTTTGGGTAATTCTTGAAGTTGGCCACACTCGAACTGAACCTGTGCTGGAGCTGTAGTGAATCTGCGCCACTAAAAAACGCAGATGCCAAGAAGGGCGCCCAACGGCGAGAACCAAACAAGCAAGAAACGAGGGAAAACAAGGTCCCAGACATGCAAACCTAA

mRNA sequence

ATGACAAGTTCCAAGTGCGAAAAACCCTTGGCGAGGTGGGCCGACTCTATGTCATACCCGACCAGGCCCTCTTTATGTCTACGCAAGTATGGTGTGTTGTTGGCGTTGGCCACACTCGAACTGAACCTGTGCTGGAGCTGTAGTGAATCTGCGCCACTAAAAAACGCAGATGCCAAGAAGGGCGCCCAACGGCGAGAACCAAACAAGCAAGAAACGAGGGAAAACAAGGTCCCAGACATGCAAACCTAA

Coding sequence (CDS)

ATGACAAGTTCCAAGTGCGAAAAACCCTTGGCGAGGTGGGCCGACTCTATGTCATACCCGACCAGGCCCTCTTTATGTCTACGCAAGTATGGTGTGTTGTTGGCGTTGGCCACACTCGAACTGAACCTGTGCTGGAGCTGTAGTGAATCTGCGCCACTAAAAAACGCAGATGCCAAGAAGGGCGCCCAACGGCGAGAACCAAACAAGCAAGAAACGAGGGAAAACAAGGTCCCAGACATGCAAACCTAA

Protein sequence

MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKKGAQRREPNKQETRENKVPDMQT

Homology

[Close]

BLAST of Carg27702 vs. NCBI nr
Match: KAG7014177.1 (hypothetical protein SDJN02_24351, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKK 60
          MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKK
Sbjct: 1  MTSSKCEKPLARWADSMSYPTRPSLCLRKYGVLLALATLELNLCWSCSESAPLKNADAKK 60

Query: 61 GAQRREPNKQETRENKVPDMQT 83
          GAQRREPNKQETRENKVPDMQT
Sbjct: 61 GAQRREPNKQETRENKVPDMQT 82

The following BLAST results are available for this feature:

BLAST of Carg27702 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014177.1	1.4e-37	100.00	hypothetical protein SDJN02_24351, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg27702 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27702 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27702 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27702-RA	Carg27702-RA	mRNA