Carg27683-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27683-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 4465463 .. 4466596 (+)
Sequence length	300
RNA-Seq Expression	Carg27683-RA
Synteny	Carg27683-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCGCATGCCGATTAGGCGAAAAAACCCGCGGAAAAGGAAAAAAGTTAGCGAAAAGAAGGCATGGCATGCACACTTACTTGGCCCTCAGAGGAGGGCGCACCACATTCTATTCCCAGTTCCAAAAGCTCATATGAAGGAAATTGTTTGGGCCATGGTCACGGAGTGTTGGACACTCCCAGACCGTTTCCGTCTTCTTGCGAGCGAAAGAACCAGAGTAAGTGCGGATATGGTTATGAGACATCATTTGGTAACAATCAGAACATGTGAGACAATAAAGGTACACGCTTATTAAGTACGCACTTTCAAAAGATCTTATATCATTTTTGTAACGGCCAAGCCTACCACTAACAGATATTGTCCTCTTTGGGTTTTTGGAAATGTTTCCACACCTTTATGAAGGGTGTTTCGTTCTCCTCCCAACCAATGTGGGATTCTCACAATCACCCATCTTTGGGTCCCAGCGTCTTCGTTAGCACTTGGTTTTTTTCTCAATCGATGTGTACCCCACGAAATCCACCCCCTCGGAGCCCAGTGTCCTTACTGGCATATTGCCTCGTGTTCTACCCCCTTCAGGGACAAATATCTACTAGTGGCGAGTTTGAATCATTTACAATTTTATACGTAGTAAGAAAATATCTACAAACTCAGATACCCGTGCTCATGATCGTTTGGCTAAGGCATGTAGTCTCGAAGTACACCTACTACAAGGTCAGCTCTTAGAACCTCCAAATGAGGTTTGGAGTGGGCGTACATGAATTATGTGACTACTGGGGAACATTTTTTCTTCTTTAACTGTAAAAGGAATTCGAGACGCTTCCAAAACATGGGAAAGGCAGGCTGCATGATTCATGACATGGGAAAATGACACTGACCCCAATATTTCAGGCTCCTTGGCTGGTTTGTGATGGCAACTTGATCTCTCTGTAGGAATACAAAATGGGCCATGCTTCAACAATAAATATATTGAAGAGCTGTTTTGTAAGCACTTTTTTGCACTTGTACTTCTCTTAATGCCATTGATTTTGGGCTCTCTATCTTCTCCAAGTCACTTTTCCTTTTGCAGCCTCTTTCTGCCTGTAGGATAGCTGTTAGAGATTTGACCTTATTTGATACAATGTTAGTTACATGA

mRNA sequence

ATGCTTCGCATGCCGATTAGGCGAAAAAACCCGCGGAAAAGGAAAAAAGTTAGCGAAAAGAAGGCATGGCATGCACACTTACTTGGCCCTCAGAGGAGGGCGCACCACATTCTATTCCCAGTTCCAAAAGCTCATATGAAGGAAATTGTTTGGGCCATGGTCACGGAGTGTTGGACACTCCCAGACCGTTTCCGTCTTCTTGCGAGCGAAAGAACCAGAGTAAGTGCGGATATGCCTCTTTCTGCCTGTAGGATAGCTGTTAGAGATTTGACCTTATTTGATACAATGTTAGTTACATGA

Coding sequence (CDS)

ATGCTTCGCATGCCGATTAGGCGAAAAAACCCGCGGAAAAGGAAAAAAGTTAGCGAAAAGAAGGCATGGCATGCACACTTACTTGGCCCTCAGAGGAGGGCGCACCACATTCTATTCCCAGTTCCAAAAGCTCATATGAAGGAAATTGTTTGGGCCATGGTCACGGAGTGTTGGACACTCCCAGACCGTTTCCGTCTTCTTGCGAGCGAAAGAACCAGAGTAAGTGCGGATATGCCTCTTTCTGCCTGTAGGATAGCTGTTAGAGATTTGACCTTATTTGATACAATGTTAGTTACATGA

Protein sequence

MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTLPDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT

Homology

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BLAST of Carg27683-RA vs. NCBI nr
Match: KAG7022126.1 (hypothetical protein SDJN02_15855, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTL 60
           MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTL
Sbjct: 1   MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTL 60

Query: 61  PDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT 100
           PDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT
Sbjct: 61  PDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT 99

The following BLAST results are available for this feature:

BLAST of Carg27683-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022126.1	3.5e-48	100.00	hypothetical protein SDJN02_15855, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg27683-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27683-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27683-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27683	Carg27683	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27683-RA:1	Carg27683-RA:1	exon
Carg27683-RA:2	Carg27683-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27683-RA:cds	Carg27683-RA:cds	CDS
Carg27683-RA:cds	Carg27683-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27683-RA	Carg27683-RA-protein	polypeptide