Carg27683 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27683
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 4465463 .. 4466596 (+)
RNA-Seq Expression	Carg27683
Synteny	Carg27683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCGCATGCCGATTAGGCGAAAAAACCCGCGGAAAAGGAAAAAAGTTAGCGAAAAGAAGGCATGGCATGCACACTTACTTGGCCCTCAGAGGAGGGCGCACCACATTCTATTCCCAGTTCCAAAAGCTCATATGAAGGAAATTGTTTGGGCCATGGTCACGGAGTGTTGGACACTCCCAGACCGTTTCCGTCTTCTTGCGAGCGAAAGAACCAGAGTAAGTGCGGATATGGTTATGAGACATCATTTGGTAACAATCAGAACATGTGAGACAATAAAGGTACACGCTTATTAAGTACGCACTTTCAAAAGATCTTATATCATTTTTGTAACGGCCAAGCCTACCACTAACAGATATTGTCCTCTTTGGGTTTTTGGAAATGTTTCCACACCTTTATGAAGGGTGTTTCGTTCTCCTCCCAACCAATGTGGGATTCTCACAATCACCCATCTTTGGGTCCCAGCGTCTTCGTTAGCACTTGGTTTTTTTCTCAATCGATGTGTACCCCACGAAATCCACCCCCTCGGAGCCCAGTGTCCTTACTGGCATATTGCCTCGTGTTCTACCCCCTTCAGGGACAAATATCTACTAGTGGCGAGTTTGAATCATTTACAATTTTATACGTAGTAAGAAAATATCTACAAACTCAGATACCCGTGCTCATGATCGTTTGGCTAAGGCATGTAGTCTCGAAGTACACCTACTACAAGGTCAGCTCTTAGAACCTCCAAATGAGGTTTGGAGTGGGCGTACATGAATTATGTGACTACTGGGGAACATTTTTTCTTCTTTAACTGTAAAAGGAATTCGAGACGCTTCCAAAACATGGGAAAGGCAGGCTGCATGATTCATGACATGGGAAAATGACACTGACCCCAATATTTCAGGCTCCTTGGCTGGTTTGTGATGGCAACTTGATCTCTCTGTAGGAATACAAAATGGGCCATGCTTCAACAATAAATATATTGAAGAGCTGTTTTGTAAGCACTTTTTTGCACTTGTACTTCTCTTAATGCCATTGATTTTGGGCTCTCTATCTTCTCCAAGTCACTTTTCCTTTTGCAGCCTCTTTCTGCCTGTAGGATAGCTGTTAGAGATTTGACCTTATTTGATACAATGTTAGTTACATGA

mRNA sequence

ATGCTTCGCATGCCGATTAGGCGAAAAAACCCGCGGAAAAGGAAAAAAGTTAGCGAAAAGAAGGCATGGCATGCACACTTACTTGGCCCTCAGAGGAGGGCGCACCACATTCTATTCCCAGTTCCAAAAGCTCATATGAAGGAAATTGTTTGGGCCATGGTCACGGAGTGTTGGACACTCCCAGACCGTTTCCGTCTTCTTGCGAGCGAAAGAACCAGAGTAAGTGCGGATATGCCTCTTTCTGCCTGTAGGATAGCTGTTAGAGATTTGACCTTATTTGATACAATGTTAGTTACATGA

Coding sequence (CDS)

ATGCTTCGCATGCCGATTAGGCGAAAAAACCCGCGGAAAAGGAAAAAAGTTAGCGAAAAGAAGGCATGGCATGCACACTTACTTGGCCCTCAGAGGAGGGCGCACCACATTCTATTCCCAGTTCCAAAAGCTCATATGAAGGAAATTGTTTGGGCCATGGTCACGGAGTGTTGGACACTCCCAGACCGTTTCCGTCTTCTTGCGAGCGAAAGAACCAGAGTAAGTGCGGATATGCCTCTTTCTGCCTGTAGGATAGCTGTTAGAGATTTGACCTTATTTGATACAATGTTAGTTACATGA

Protein sequence

MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTLPDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT

Homology

[Close]

BLAST of Carg27683 vs. NCBI nr
Match: KAG7022126.1 (hypothetical protein SDJN02_15855, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTL 60
           MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTL
Sbjct: 1   MLRMPIRRKNPRKRKKVSEKKAWHAHLLGPQRRAHHILFPVPKAHMKEIVWAMVTECWTL 60

Query: 61  PDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT 100
           PDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT
Sbjct: 61  PDRFRLLASERTRVSADMPLSACRIAVRDLTLFDTMLVT 99

The following BLAST results are available for this feature:

BLAST of Carg27683 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022126.1	3.5e-48	100.00	hypothetical protein SDJN02_15855, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg27683 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27683 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27683 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27683-RA	Carg27683-RA	mRNA