Carg26320-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26320-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 6864554 .. 6865602 (+)
Sequence length747
RNA-Seq ExpressionCarg26320-RA
SyntenyCarg26320-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGTTCTTCTCCCCAATCGACGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAGCATCCTTGCTGGCACTCATTCCCTTCTCCAATCAATGTGGGACCCCTCCCTTCAGGACCCAACGTCCTCGTTGACATTCATTCCCTCTCCAATTGATGTGGAACCCCCCAATCCACCCCATTTCGGGGCCCAGTGTCCTTGCTGGCACACTGCCTTGTATCCGCCCCCTTTCAGGGCTCAGCCTCCTCGCTGGTACATTGTTCGGTGTCTGGCTCTTATACCAATTGTAATAGCTCAAGCCCATCACTAGCAAATATTGTTCTCTTTGTGCTTTCTCTTTTGGACTTTCCCTCAAGGTTTTCAAAACGCGTCTACTTGGTAAAAGTTTCCATTTCTTTAGAAAGAATGCTTCGTTCCCCTCTTCAACATGCTTCGTTCCCCTCTTCCACCGATGTGGGATCTCACAATCTACCCCCTTTCAGGACTCGGTGTCCTTGCCGGCACTCATTCCCCTCTCCAATCGATATGGAATCTCACATCTAGAGTATGATATTATAGGCTGAAATCTAGTATACAAGTCTTTGCACCTAATACAACTGAATCACATCAATATTTCTCAAGAGCGTCAATAATGTTGTGTGTGTTTATATTCATTTTAGAATGTGATTAAATTCTTAGAATTACTATACGACAGTGATTCTTATGGAACTTTTTTGGTTTGGACTTTGGTAGAACAACCAGGAGTTTTACATGTTGTCCAAAGCGGTTCTAATAAGCTGCATACTGGAGGAGGAGGAGTAGCAAGGCTTCACTAGAAGAACATCAAATTCTCTCCCTAGAATCATCGGTTTGTTGCCTAAATAAAGTGCTTTATGTGTATATTGGCATTATACTGAATACTCATATATGTGTGTGTATCTATTTACCATAATATGTCTGCTTGTGCCTTCTGGCAATCGACAATGATGAAGCGAATGATTTACCTTGGCTAAATACACTAATTGGTCCTTAATAAATTCCTTCCTTGATGTATTGGAAGATTTCTAT

mRNA sequence

ATGCTTCGTTCTTCTCCCCAATCGACGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAGCATCCTTGCTGGCACTCATTCCCTTCTCCAATCAATGTGGGACCCCTCCCTTCAGGACCCAACGTCCTCGTTGACATTCATTCCCTCTCCAATTGATGTGGAACCCCCCAATCCACCCCATTTCGGGGCCCAGTGTCCTTGCTGGCACACTGCCTTGTATCCGCCCCCTTTCAGGGCTCAGCCTCCTCGCTGGTACATTGTTCGGTGTCTGGCTCTTATACCAATTAAAGAATGCTTCGTTCCCCTCTTCAACATGCTTCGTTCCCCTCTTCCACCGATGTGGGATCTCACAATCTACCCCCTTTCAGGACTCGGTGTCCTTGCCGGCACTCATTCCCCTCTCCAATCGATATGGAATCTCACATCTAGAAACAACCAGGAGTTTTACATGTTGTCCAAAGCGGTTCTAATAAGCTGCATACTGGAGGAGGAGGAGTAGCAAGGCTTCACTAGAAGAACATCAAATTCTCTCCCTAGAATCATCGGTTTGTTGCCTAAATAAAGTGCTTTATGTGTATATTGGCATTATACTGAATACTCATATATGTGTGTGTATCTATTTACCATAATATGTCTGCTTGTGCCTTCTGGCAATCGACAATGATGAAGCGAATGATTTACCTTGGCTAAATACACTAATTGGTCCTTAATAAATTCCTTCCTTGATGTATTGGAAGATTTCTAT

Coding sequence (CDS)

ATGCTTCGTTCTTCTCCCCAATCGACGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAGCATCCTTGCTGGCACTCATTCCCTTCTCCAATCAATGTGGGACCCCTCCCTTCAGGACCCAACGTCCTCGTTGACATTCATTCCCTCTCCAATTGATGTGGAACCCCCCAATCCACCCCATTTCGGGGCCCAGTGTCCTTGCTGGCACACTGCCTTGTATCCGCCCCCTTTCAGGGCTCAGCCTCCTCGCTGGTACATTGTTCGGTGTCTGGCTCTTATACCAATTAAAGAATGCTTCGTTCCCCTCTTCAACATGCTTCGTTCCCCTCTTCCACCGATGTGGGATCTCACAATCTACCCCCTTTCAGGACTCGGTGTCCTTGCCGGCACTCATTCCCCTCTCCAATCGATATGGAATCTCACATCTAGAAACAACCAGGAGTTTTACATGTTGTCCAAAGCGGTTCTAATAAGCTGCATACTGGAGGAGGAGGAGTAG

Protein sequence

MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPPHFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIYPLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE
Homology
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BLAST of Carg26320-RA vs. NCBI nr
Match: KAG7025070.1 (hypothetical protein SDJN02_13893, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.0 bits (907), Expect = 7.1e-94
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPP 60
           MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPP
Sbjct: 1   MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPP 60

Query: 61  HFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIY 120
           HFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIY
Sbjct: 61  HFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIY 120

Query: 121 PLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE 167
           PLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE
Sbjct: 121 PLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE 166

The following BLAST results are available for this feature:
BLAST of Carg26320-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025070.17.1e-94100.00hypothetical protein SDJN02_13893, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26320-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26320-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26320-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg26320Carg26320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26320-RA:1Carg26320-RA:1exon
Carg26320-RA:2Carg26320-RA:2exon
Carg26320-RA:3Carg26320-RA:3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26320-RA:cdsCarg26320-RA:cdsCDS
Carg26320-RA:cdsCarg26320-RA:cds_2CDS
Carg26320-RA:cdsCarg26320-RA:cds_3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26320-RA:three_prime_utrCarg26320-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg26320-RACarg26320-RA-proteinpolypeptide