Carg26320 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26320
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 6864554 .. 6865602 (+)
RNA-Seq ExpressionCarg26320
SyntenyCarg26320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGTTCTTCTCCCCAATCGACGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAGCATCCTTGCTGGCACTCATTCCCTTCTCCAATCAATGTGGGACCCCTCCCTTCAGGACCCAACGTCCTCGTTGACATTCATTCCCTCTCCAATTGATGTGGAACCCCCCAATCCACCCCATTTCGGGGCCCAGTGTCCTTGCTGGCACACTGCCTTGTATCCGCCCCCTTTCAGGGCTCAGCCTCCTCGCTGGTACATTGTTCGGTGTCTGGCTCTTATACCAATTGTAATAGCTCAAGCCCATCACTAGCAAATATTGTTCTCTTTGTGCTTTCTCTTTTGGACTTTCCCTCAAGGTTTTCAAAACGCGTCTACTTGGTAAAAGTTTCCATTTCTTTAGAAAGAATGCTTCGTTCCCCTCTTCAACATGCTTCGTTCCCCTCTTCCACCGATGTGGGATCTCACAATCTACCCCCTTTCAGGACTCGGTGTCCTTGCCGGCACTCATTCCCCTCTCCAATCGATATGGAATCTCACATCTAGAGTATGATATTATAGGCTGAAATCTAGTATACAAGTCTTTGCACCTAATACAACTGAATCACATCAATATTTCTCAAGAGCGTCAATAATGTTGTGTGTGTTTATATTCATTTTAGAATGTGATTAAATTCTTAGAATTACTATACGACAGTGATTCTTATGGAACTTTTTTGGTTTGGACTTTGGTAGAACAACCAGGAGTTTTACATGTTGTCCAAAGCGGTTCTAATAAGCTGCATACTGGAGGAGGAGGAGTAGCAAGGCTTCACTAGAAGAACATCAAATTCTCTCCCTAGAATCATCGGTTTGTTGCCTAAATAAAGTGCTTTATGTGTATATTGGCATTATACTGAATACTCATATATGTGTGTGTATCTATTTACCATAATATGTCTGCTTGTGCCTTCTGGCAATCGACAATGATGAAGCGAATGATTTACCTTGGCTAAATACACTAATTGGTCCTTAATAAATTCCTTCCTTGATGTATTGGAAGATTTCTAT

mRNA sequence

ATGCTTCGTTCTTCTCCCCAATCGACGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAGCATCCTTGCTGGCACTCATTCCCTTCTCCAATCAATGTGGGACCCCTCCCTTCAGGACCCAACGTCCTCGTTGACATTCATTCCCTCTCCAATTGATGTGGAACCCCCCAATCCACCCCATTTCGGGGCCCAGTGTCCTTGCTGGCACACTGCCTTGTATCCGCCCCCTTTCAGGGCTCAGCCTCCTCGCTGGTACATTGTTCGGTGTCTGGCTCTTATACCAATTAAAGAATGCTTCGTTCCCCTCTTCAACATGCTTCGTTCCCCTCTTCCACCGATGTGGGATCTCACAATCTACCCCCTTTCAGGACTCGGTGTCCTTGCCGGCACTCATTCCCCTCTCCAATCGATATGGAATCTCACATCTAGAAACAACCAGGAGTTTTACATGTTGTCCAAAGCGGTTCTAATAAGCTGCATACTGGAGGAGGAGGAGTAGCAAGGCTTCACTAGAAGAACATCAAATTCTCTCCCTAGAATCATCGGTTTGTTGCCTAAATAAAGTGCTTTATGTGTATATTGGCATTATACTGAATACTCATATATGTGTGTGTATCTATTTACCATAATATGTCTGCTTGTGCCTTCTGGCAATCGACAATGATGAAGCGAATGATTTACCTTGGCTAAATACACTAATTGGTCCTTAATAAATTCCTTCCTTGATGTATTGGAAGATTTCTAT

Coding sequence (CDS)

ATGCTTCGTTCTTCTCCCCAATCGACGTGGGATCTCACAATCCACCCCCCTTCGGGGCCCAGCATCCTTGCTGGCACTCATTCCCTTCTCCAATCAATGTGGGACCCCTCCCTTCAGGACCCAACGTCCTCGTTGACATTCATTCCCTCTCCAATTGATGTGGAACCCCCCAATCCACCCCATTTCGGGGCCCAGTGTCCTTGCTGGCACACTGCCTTGTATCCGCCCCCTTTCAGGGCTCAGCCTCCTCGCTGGTACATTGTTCGGTGTCTGGCTCTTATACCAATTAAAGAATGCTTCGTTCCCCTCTTCAACATGCTTCGTTCCCCTCTTCCACCGATGTGGGATCTCACAATCTACCCCCTTTCAGGACTCGGTGTCCTTGCCGGCACTCATTCCCCTCTCCAATCGATATGGAATCTCACATCTAGAAACAACCAGGAGTTTTACATGTTGTCCAAAGCGGTTCTAATAAGCTGCATACTGGAGGAGGAGGAGTAG

Protein sequence

MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPPHFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIYPLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE
Homology
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BLAST of Carg26320 vs. NCBI nr
Match: KAG7025070.1 (hypothetical protein SDJN02_13893, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.0 bits (907), Expect = 7.1e-94
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPP 60
           MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPP
Sbjct: 1   MLRSSPQSTWDLTIHPPSGPSILAGTHSLLQSMWDPSLQDPTSSLTFIPSPIDVEPPNPP 60

Query: 61  HFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIY 120
           HFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIY
Sbjct: 61  HFGAQCPCWHTALYPPPFRAQPPRWYIVRCLALIPIKECFVPLFNMLRSPLPPMWDLTIY 120

Query: 121 PLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE 167
           PLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE
Sbjct: 121 PLSGLGVLAGTHSPLQSIWNLTSRNNQEFYMLSKAVLISCILEEEE 166

The following BLAST results are available for this feature:
BLAST of Carg26320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025070.17.1e-94100.00hypothetical protein SDJN02_13893, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26320 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26320-RACarg26320-RAmRNA