Carg24380-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGTACGTGTTGGTATTGATGCTTTTGTCGTTTTCGATCTGATTCCTCAATTGTGTCGCTTTGGTTATGGGTTGGTTTGTGCTTAATCTGTTTCTCTAATTTGATGATGTCAACGCTGCTCTGCTTGGTTTCCCTTTTGATTTGGGACTTGCTGTGTTTAGCTTTGTATTGGATGTTGTTTTCTGTTCGTCGATTGATTGTGAGGTTTGAAACTTAATTGTGCTGTGTTCTCCAGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTAGAGTTCGGTGCGAGGATGATCACCATCGACAGCAAGCCAATTAAGTTGCAAATTTGGGATACGGTTAGTTATCTCTCTTTCTTTCTTTCCTTCTTTTTCTGGGAGTTTCTTGTTTCAAATCTTTAGATATTTAACTGTGCCACTTGTCTACTGAATTGAATGAGCTCTGTTCTGGTTTATGGATAGTATTTTACCTTTTCTTGGATCCATTTCAAGGAAAAGAATCTGCAATTATACCAGAGAATAGCGGGTGATCTGCTGCTATAAGCTTAATCTTAGTTCGAGTAAAAGGCGAAAACAATAACTAATAGAACTGGGAAGCTTCCATTCATGCTAAGCTTCCATTCATGCTTACTATGTATAGTCTATACTATTTAGTTTATCATTGTAACATGGCTTTGAATCTGAAAAGTTATCTATAAGTTATGCAACACTTATATATGCTCTTAGCTCAAGTGCTCTGCTTAAACTTAGAGAACATACACATAACATAGTACACTTATTCTATTGCTTAATGATAGTTATTCACTATCTGCTTTGTGTGTAATATGATGATCACTATTGAATCAACGTCATGTATTGTTCATTTCTATTATACATATATACCATAAGATTGGTACAGATGTTCGTTCCTTGTACTCTTTCGATTTAGATTTGTCCTTTTGTTTCTTATTAATTTCATCGAGTTTTTCTGAGTCTGAAGTTTCCCAAAAAAATTGCAGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTCTATGACATCACCAGGTCTTTTTACCTCTTGGTTCCATTCTAACTTAATACTACTTTTGAGTTTTGATGTAGGGATGTTTCTGTACTTCTGTTATTTGTGTTTGATGTCTTATGCAGCCGTTGGGTAAGACCGTTAGTGTGTTTAACCAAGCTGGTTAAGGTCATTACGTTTAGCAGTTGGAACTAGTCAGTTGGTTCGCTTCAGTTAGCTCTTTATAGTATAAATATTCATTGTTTTGGTTGTATGAAATTCATTCCCCTCAGCTACACCAATTTTCTAGTGAATAAGTAAGGGAGGCTTTTGAAATTCATCCCCCAAATGGGTCAGTATGCGGAACCACTGTTTGAAAGATATTTTAGAAACTTGGAGAGGATACTCCTATTCCTTTTGCAATTCATTATTGTTCTTTTCCTGGGGACCTAATATTCAATCAATTAAACCAGTCATATTGAAGTTGAATTATAATTCATGTTGGGAGTGAGAATTTGTAAAACCCATGATAGACAGCAAGTCACCCAAAAGTATAGTCGTGTAGAAAAAGGGAAAAAGGGAGACTGAGTGATATAAGTACGTGAGGATTGGCAGGCGTGTGCGTTATGATTATGTGGCCATATATTATGGTTAGTTATACTTTTTGTGTATGTTGAAGGCTGCTTATGGCAAAGAGGAGGCTATCTTTTTGCATTTTGCTCAATTGTAGCTCCTTCGGGCATAGTGGAGAGGAGGGGAGCTCTTGAAACTCCCTTGGCATTGCCAAAACAGTTAATAGATAATTTGAGGCCTATCGATCCCTGAGTCACCAGGAAAGCTCACACTTCATGAAAGTAAACAAGACTTGGCCAGAAAGGTTATTGGTTAGTGGGACTGACCATTGTGTTAGAAGGTTGTAGATGTAATCTAAAAGAATTTTGGGTGGACAGCATAAAGTTTAAATGTGAATGCTCGAATTTTCTTGGATTAGTTGTGGTTTATTTTTGTCTTGCATAGTTGTAGGTTTTGTGAGAAGGAAATAACTTGAGCAAGACCGTAGTTGTTAAAATAATGCGGTCAGCCAGGTCTGACAGCAGCCAGCTCTAAACTGTTCCAACTTCATGATGTTTGTCGTGATTCAGCCTTCTAGTTTAACTTGATTGACTGCATAAGCTGAAATGGGGCCTCATCATCATGCCCCTAAATTTCCTGAGTCAATGAGGACATCGAACTTAAGGTTACGTGGCTATCATATTTTTCAGGAGGGAGACTTTTAATCACCTGGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATCGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTTGCAAAGGAACATGGTCTAATTTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGTGATAGAATAGTCATAAATTGCCTTCCAGAAAGTTCAAAATTAGACACTGTTCATCTCTAAGCTAAGAACATGACATAAAGATATAATATTCATCTTTTTTATATATTGTAAACAGTTCTCCGTCTCACAATCTTCGTGATGATCAACAATTTTTACAGGCATTCATACAAACTGCTGCAACCATATATAAGAAGATCCAGGATGGAGTATTTGATGTATCTAATGAGGTATGAAGCTTGCTTTTTAACTTGCTGCTAAATGTGTACGGAAATGTTTTAGTTTTACCATGGCATTTTCTCTTGCGTCACGGTGATCAAAGTGCATCTGATTAGATTGGGGGTCTTGAATTTACTTTTGACTGTGCTACTTCAAGTGGTGTTTCACCGTTAGTCAAAAGTTATTTAGCTGCTTGAATTGAACAATGTTTGGCCAGTGGCATTTAGCGACTGCTATAAGTGACAGAATTTAGATTCGAGTCTCTAGTCTCTTAGAATTTTGTTGTTACAACGGATGAATAGCGATGAGAATGAATGATGTAAGTGATGCTATGTTCCATCTTATGTGCAGTCATATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAAATCTTGCTGCTCAAAAACTAGTACAAATTGTCCACGTTCTCTTTAAATTCCTTTGTTAATTATGAGTGTCAGAAAACGCCCCCTCACCCTCATAAAAGGGCACCATAATAGGTTATCAGGTGTTTATCTAATGGCCCCAAGGGGTGGCTCCGTTGGCAGGGGCTTGGGGTCTGTTGTTATACCAGCTTAATGATCCAAAACTCAAGCCTTCGGGTGAGCTTAATACCAAAAACCCTTGATGTCGCCCGGATTCTGGCCTTGGGCGGGCATCGGTGCCCTTGGGTATAGAGGAACGAAGTTCTAACTCCCAGTTATCCATAAAGAAGTATTTGTGTAATCATTAGACGTGTTGTGTTTTTGTTAATTATGTCTTGATCATATTTGATTGTAAAGGTAAACTCACATATCAATGCATGTCATTTGTGGC ATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTAGAGTTCGGTGCGAGGATGATCACCATCGACAGCAAGCCAATTAAGTTGCAAATTTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTCTATGACATCACCAGGAGGGAGACTTTTAATCACCTGGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATCGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTTGCAAAGGAACATGGTCTAATTTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATACAAACTGCTGCAACCATATATAAGAAGATCCAGGATGGAGTATTTGATGTATCTAATGAGTCATATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAAATCTTGCTGCTCAAAAACTAGTACAAATTGTCCACGTTCTCTTTAAATTCCTTTGTTAATTATGAGTGTCAGAAAACGCCCCCTCACCCTCATAAAAGGGCACCATAATAGGTTATCAGTTATCCATAAAGAAGTATTTGTGTAATCATTAGACGTGTTGTGTTTTTGTTAATTATGTCTTGATCATATTTGATTGTAAAGGTAAACTCACATATCAATGCATGTCATTTGTGGC ATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTAGAGTTCGGTGCGAGGATGATCACCATCGACAGCAAGCCAATTAAGTTGCAAATTTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTCTATGACATCACCAGGAGGGAGACTTTTAATCACCTGGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATCGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTTGCAAAGGAACATGGTCTAATTTTCATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATACAAACTGCTGCAACCATATATAAGAAGATCCAGGATGGAGTATTTGATGTATCTAATGAGTCATATGGGATAAAAGTTGGATATGGTGGAATCCCAGGGCCATCAGGAGGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAA MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG Homology
BLAST of Carg24380-RA vs. NCBI nr
Match: KAG7019338.1 (Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of Carg24380-RA vs. NCBI nr
Match: XP_022927533.1 (ras-related protein RABB1c-like [Cucurbita moschata] >KAG6583677.1 Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of Carg24380-RA vs. NCBI nr
Match: XP_023520190.1 (LOW QUALITY PROTEIN: ras-related protein RABB1c-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 423.7 bits (1088), Expect = 9.3e-115 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of Carg24380-RA vs. NCBI nr
Match: XP_038893942.1 (ras-related protein RABB1c isoform X2 [Benincasa hispida]) HSP 1 Score: 421.8 bits (1083), Expect = 3.5e-114 Identity = 208/210 (99.05%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg24380-RA vs. NCBI nr
Match: XP_022973163.1 (ras-related protein RABB1c-like [Cucurbita maxima]) HSP 1 Score: 421.0 bits (1081), Expect = 6.0e-114 Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1) HSP 1 Score: 419.1 bits (1076), Expect = 3.0e-116 Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 3.3e-107 Identity = 192/210 (91.43%), Postives = 200/210 (95.24%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2) HSP 1 Score: 385.2 bits (988), Expect = 4.8e-106 Identity = 192/210 (91.43%), Postives = 201/210 (95.71%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 7.7e-104 Identity = 183/211 (86.73%), Postives = 197/211 (93.36%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy Swiss-Prot
Match: P36863 (GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 6.7e-100 Identity = 184/213 (86.38%), Postives = 190/213 (89.20%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy TrEMBL
Match: A0A6J1EL97 (ras-related protein RABB1c-like OS=Cucurbita moschata OX=3662 GN=LOC111434331 PE=4 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 9.1e-116 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy TrEMBL
Match: A0A6J1IC90 (ras-related protein RABB1c-like OS=Cucurbita maxima OX=3661 GN=LOC111471671 PE=4 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 2.9e-114 Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy TrEMBL
Match: A0A6J1CNK8 (ras-related protein RABB1c OS=Momordica charantia OX=3673 GN=LOC111012746 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 5.0e-114 Identity = 207/210 (98.57%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy TrEMBL
Match: A0A218XLU8 (ras-related protein RABB1c OS=Punica granatum OX=22663 GN=LOC116208255 PE=4 SV=1) HSP 1 Score: 419.9 bits (1078), Expect = 6.5e-114 Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0
BLAST of Carg24380-RA vs. ExPASy TrEMBL
Match: A0A0A0LYF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172570 PE=4 SV=1) HSP 1 Score: 419.9 bits (1078), Expect = 6.5e-114 Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0
BLAST of Carg24380-RA vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C ) HSP 1 Score: 419.1 bits (1076), Expect = 2.1e-117 Identity = 206/211 (97.63%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of Carg24380-RA vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 ) HSP 1 Score: 377.9 bits (969), Expect = 5.4e-105 Identity = 183/211 (86.73%), Postives = 197/211 (93.36%), Query Frame = 0
BLAST of Carg24380-RA vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A ) HSP 1 Score: 334.3 bits (856), Expect = 6.9e-92 Identity = 168/212 (79.25%), Postives = 184/212 (86.79%), Query Frame = 0
BLAST of Carg24380-RA vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 ) HSP 1 Score: 284.6 bits (727), Expect = 6.3e-77 Identity = 138/165 (83.64%), Postives = 152/165 (92.12%), Query Frame = 0
BLAST of Carg24380-RA vs. TAIR 10
Match: AT4G18430.1 (RAB GTPase homolog A1E ) HSP 1 Score: 194.9 bits (494), Expect = 6.5e-50 Identity = 102/209 (48.80%), Postives = 130/209 (62.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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