Carg24341-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24341-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 5280815 .. 5281039 (+)
Sequence length225
RNA-Seq ExpressionCarg24341-RA
SyntenyCarg24341-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGAAGGCACTCTTTCAGTCCCTAGACATGCAATTTACTAATAATGTTAGTACACCATTTTTATGGCTTCAACTCAACAATATTTGGTTATATTTCGTTCGTCCTTTCTCTCGAGAAAGTAATAACTCAGTCCATAAACTTTTGTTTGTGTTGTTACCAAATTTTGGGCGGAAAAAATATATTTGTCCTTCACGTGAAAACAACGGTAAATTTAGTTCG

mRNA sequence

ATGCCAATGAAGGCACTCTTTCAGTCCCTAGACATGCAATTTACTAATAATGTTAGTACACCATTTTTATGGCTTCAACTCAACAATATTTGGTTATATTTCGTTCGTCCTTTCTCTCGAGAAAGTAATAACTCAGTCCATAAACTTTTGTTTGTGTTGTTACCAAATTTTGGGCGGAAAAAATATATTTGTCCTTCACGTGAAAACAACGGTAAATTTAGTTCG

Coding sequence (CDS)

ATGCCAATGAAGGCACTCTTTCAGTCCCTAGACATGCAATTTACTAATAATGTTAGTACACCATTTTTATGGCTTCAACTCAACAATATTTGGTTATATTTCGTTCGTCCTTTCTCTCGAGAAAGTAATAACTCAGTCCATAAACTTTTGTTTGTGTTGTTACCAAATTTTGGGCGGAAAAAATATATTTGTCCTTCACGTGAAAACAACGGTAAATTTAGTTCG

Protein sequence

MPMKALFQSLDMQFTNNVSTPFLWLQLNNIWLYFVRPFSRESNNSVHKLLFVLLPNFGRKKYICPSRENNGKFSS
Homology
[Close]
BLAST of Carg24341-RA vs. NCBI nr
Match: KAG7027298.1 (hypothetical protein SDJN02_11310, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 8.9e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPMKALFQSLDMQFTNNVSTPFLWLQLNNIWLYFVRPFSRESNNSVHKLLFVLLPNFGRK 60
          MPMKALFQSLDMQFTNNVSTPFLWLQLNNIWLYFVRPFSRESNNSVHKLLFVLLPNFGRK
Sbjct: 1  MPMKALFQSLDMQFTNNVSTPFLWLQLNNIWLYFVRPFSRESNNSVHKLLFVLLPNFGRK 60

Query: 61 KYICPSRENNGKFSS 76
          KYICPSRENNGKFSS
Sbjct: 61 KYICPSRENNGKFSS 75

The following BLAST results are available for this feature:
BLAST of Carg24341-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027298.18.9e-36100.00hypothetical protein SDJN02_11310, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24341-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24341-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24341-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg24341Carg24341gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24341-RA:1Carg24341-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24341-RA:cdsCarg24341-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg24341-RACarg24341-RA-proteinpolypeptide