Carg21677-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21677-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 4464509 .. 4465485 (+)
Sequence length344
RNA-Seq ExpressionCarg21677-RA
SyntenyCarg21677-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTGAATTAACATTTAGTTGGAGATGGGAAGAGGAGGAGAAGATGTCGAACGGGGGTACTGGTAGAGTTGAAATCCATGGACTTCAACAAACCTGGTCTGAATTCTCAAGGAACCCACAGCTTTCATCTTCTTCCCCTCCCGGAAAACCCTCAATTTCACAATTAGGGCACAACATTCTTCGTTCTGTTCTGTACAATCAGATTTTGAATTCCGTCGTCGCATTGATTTTCTTTGCTCTCCGATCACTATTCTTCACGGGAACATCACTCTCGGTCTCTGCCGCCTACCAATCGTTTTCTGTAATCCCTTCACCTGCTTAGAATCAGATTATATTGTTCTTCTGTGCTATATCGCAGATGGCTAACATTGATTTCCATTCTAACATTTCTTCCAATGTTGGGATCATATTTGTTTTTCAATTTCAGGTCTGATGCTGAAGTGATATAGTGGATTAACTTGGAATATGATTTTGGTGTGTTTTCCAATCTGATTATGATGCTTATCTAGTGACTGACTGGTATATCGTCTCACCTGGATTCCTTGAGCTTTGAATACCATGAAATCTATTTAAACTTTTAGTTTCTTGTTATAAATATGATGCAAGTTTCTATTTACTTGAAAATAAGGAAGTGTCACACTGGAAACCAGTTGCAAATCCATGAATTTCTAGGGAGTGATTGACGAAATTCCTGGTTTTAAATTCTATGGCTAGGCTAACATTTTTTATTCTTAGAAGGCTCGGTGAGTATTAGTTCTGAAGGTGTTCCTTTTTTAAATATTGTATTCTTCTTTCAGGAAAGTGTGTATGGCCTTCCACGTTCATTTCATAATGTGGTTCTTATAAATTTCATTTTGAACTTGTCTTGTAGAAGAATATAAATGCAAACAGAAGTCTTTAACCTTTTGATGCACATGCTTCTTTGTGATGTCAGGGAGTTTTGCTAGTAGGAGAAGAAAAGGGACGTGACTATTAA

mRNA sequence

AAGTTGAATTAACATTTAGTTGGAGATGGGAAGAGGAGGAGAAGATGTCGAACGGGGGTACTGGTAGAGTTGAAATCCATGGACTTCAACAAACCTGGTCTGAATTCTCAAGGAACCCACAGCTTTCATCTTCTTCCCCTCCCGGAAAACCCTCAATTTCACAATTAGGGCACAACATTCTTCGTTCTGTTCTGTACAATCAGATTTTGAATTCCGTCGTCGCATTGATTTTCTTTGCTCTCCGATCACTATTCTTCACGGGAACATCACTCTCGGTCTCTGCCGCCTACCAATCGTTTTCTGGAGTTTTGCTAGTAGGAGAAGAAAAGGGACGTGACTATTAA

Coding sequence (CDS)

ATGTCGAACGGGGGTACTGGTAGAGTTGAAATCCATGGACTTCAACAAACCTGGTCTGAATTCTCAAGGAACCCACAGCTTTCATCTTCTTCCCCTCCCGGAAAACCCTCAATTTCACAATTAGGGCACAACATTCTTCGTTCTGTTCTGTACAATCAGATTTTGAATTCCGTCGTCGCATTGATTTTCTTTGCTCTCCGATCACTATTCTTCACGGGAACATCACTCTCGGTCTCTGCCGCCTACCAATCGTTTTCTGGAGTTTTGCTAGTAGGAGAAGAAAAGGGACGTGACTATTAA

Protein sequence

MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVALIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY
Homology
[Close]
BLAST of Carg21677-RA vs. NCBI nr
Match: KAG7037109.1 (hypothetical protein SDJN02_00730 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60
           MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA
Sbjct: 1   MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60

Query: 61  LIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY 100
           LIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY
Sbjct: 61  LIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY 99

[Close]
BLAST of Carg21677-RA vs. NCBI nr
Match: KAG6607451.1 (hypothetical protein SDJN03_00793, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60
          MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA
Sbjct: 1  MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60

Query: 61 LIFFALRSLFFTGTSLSVSAAYQSFS 87
          LIFFALRSLFFTGTSLSVSAAYQSFS
Sbjct: 61 LIFFALRSLFFTGTSLSVSAAYQSFS 86

The following BLAST results are available for this feature:
BLAST of Carg21677-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037109.12.8e-45100.00hypothetical protein SDJN02_00730 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6607451.12.1e-37100.00hypothetical protein SDJN03_00793, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg21677-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21677-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21677-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg21677Carg21677gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21677-RA:1Carg21677-RA:1exon
Carg21677-RA:2Carg21677-RA:2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21677-RA:five_prime_utrCarg21677-RA:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21677-RA:cdsCarg21677-RA:cdsCDS
Carg21677-RA:cdsCarg21677-RA:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg21677-RACarg21677-RA-proteinpolypeptide