Carg21677 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21677
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 4464509 .. 4465485 (+)
RNA-Seq ExpressionCarg21677
SyntenyCarg21677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTGAATTAACATTTAGTTGGAGATGGGAAGAGGAGGAGAAGATGTCGAACGGGGGTACTGGTAGAGTTGAAATCCATGGACTTCAACAAACCTGGTCTGAATTCTCAAGGAACCCACAGCTTTCATCTTCTTCCCCTCCCGGAAAACCCTCAATTTCACAATTAGGGCACAACATTCTTCGTTCTGTTCTGTACAATCAGATTTTGAATTCCGTCGTCGCATTGATTTTCTTTGCTCTCCGATCACTATTCTTCACGGGAACATCACTCTCGGTCTCTGCCGCCTACCAATCGTTTTCTGTAATCCCTTCACCTGCTTAGAATCAGATTATATTGTTCTTCTGTGCTATATCGCAGATGGCTAACATTGATTTCCATTCTAACATTTCTTCCAATGTTGGGATCATATTTGTTTTTCAATTTCAGGTCTGATGCTGAAGTGATATAGTGGATTAACTTGGAATATGATTTTGGTGTGTTTTCCAATCTGATTATGATGCTTATCTAGTGACTGACTGGTATATCGTCTCACCTGGATTCCTTGAGCTTTGAATACCATGAAATCTATTTAAACTTTTAGTTTCTTGTTATAAATATGATGCAAGTTTCTATTTACTTGAAAATAAGGAAGTGTCACACTGGAAACCAGTTGCAAATCCATGAATTTCTAGGGAGTGATTGACGAAATTCCTGGTTTTAAATTCTATGGCTAGGCTAACATTTTTTATTCTTAGAAGGCTCGGTGAGTATTAGTTCTGAAGGTGTTCCTTTTTTAAATATTGTATTCTTCTTTCAGGAAAGTGTGTATGGCCTTCCACGTTCATTTCATAATGTGGTTCTTATAAATTTCATTTTGAACTTGTCTTGTAGAAGAATATAAATGCAAACAGAAGTCTTTAACCTTTTGATGCACATGCTTCTTTGTGATGTCAGGGAGTTTTGCTAGTAGGAGAAGAAAAGGGACGTGACTATTAA

mRNA sequence

AAGTTGAATTAACATTTAGTTGGAGATGGGAAGAGGAGGAGAAGATGTCGAACGGGGGTACTGGTAGAGTTGAAATCCATGGACTTCAACAAACCTGGTCTGAATTCTCAAGGAACCCACAGCTTTCATCTTCTTCCCCTCCCGGAAAACCCTCAATTTCACAATTAGGGCACAACATTCTTCGTTCTGTTCTGTACAATCAGATTTTGAATTCCGTCGTCGCATTGATTTTCTTTGCTCTCCGATCACTATTCTTCACGGGAACATCACTCTCGGTCTCTGCCGCCTACCAATCGTTTTCTGGAGTTTTGCTAGTAGGAGAAGAAAAGGGACGTGACTATTAA

Coding sequence (CDS)

ATGTCGAACGGGGGTACTGGTAGAGTTGAAATCCATGGACTTCAACAAACCTGGTCTGAATTCTCAAGGAACCCACAGCTTTCATCTTCTTCCCCTCCCGGAAAACCCTCAATTTCACAATTAGGGCACAACATTCTTCGTTCTGTTCTGTACAATCAGATTTTGAATTCCGTCGTCGCATTGATTTTCTTTGCTCTCCGATCACTATTCTTCACGGGAACATCACTCTCGGTCTCTGCCGCCTACCAATCGTTTTCTGGAGTTTTGCTAGTAGGAGAAGAAAAGGGACGTGACTATTAA

Protein sequence

MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVALIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY
Homology
[Close]
BLAST of Carg21677 vs. NCBI nr
Match: KAG7037109.1 (hypothetical protein SDJN02_00730 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60
           MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA
Sbjct: 1   MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60

Query: 61  LIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY 100
           LIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY
Sbjct: 61  LIFFALRSLFFTGTSLSVSAAYQSFSGVLLVGEEKGRDY 99

[Close]
BLAST of Carg21677 vs. NCBI nr
Match: KAG6607451.1 (hypothetical protein SDJN03_00793, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60
          MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA
Sbjct: 1  MSNGGTGRVEIHGLQQTWSEFSRNPQLSSSSPPGKPSISQLGHNILRSVLYNQILNSVVA 60

Query: 61 LIFFALRSLFFTGTSLSVSAAYQSFS 87
          LIFFALRSLFFTGTSLSVSAAYQSFS
Sbjct: 61 LIFFALRSLFFTGTSLSVSAAYQSFS 86

The following BLAST results are available for this feature:
BLAST of Carg21677 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037109.12.8e-45100.00hypothetical protein SDJN02_00730 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6607451.12.1e-37100.00hypothetical protein SDJN03_00793, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg21677 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21677 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg21677 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21677-RACarg21677-RAmRNA