Carg20602-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20602-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 337108 .. 337636 (+)
Sequence length461
RNA-Seq ExpressionCarg20602-RA
SyntenyCarg20602-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCCGACTTCCAAAATAACTAATCGCTAGACCGTGAACAAACCAAGATGATGTTCTCCTCATGGCTAACAAATACAGCACAACACAGACGCATTATGATACGAACAACCAGTAAAAATCAAAGTTCCATAGCTTCAGAACAAATTATTGACTTCTAAAATCATCAAGTGTTCATCCAGAGTTCAAAATTCAAAAACAAACCTGCAAGATTCTGGATTCGAACTGGGGCAGACCCATTTGAGAGACTGTCAAAGATCCAAACAAATTCCCAAGCAATGCAGCATCCGATACAGCCAATCCCGCCGTGAATCCCGCCGCAAACCCACCCAAGAAGCAGTCACCGGCTCCAGTAGGATCGAGCTCAGCCGCCGTGAACGGCGCAATCTGCAACTGGCCGCCGTTCGAATACACCGTACACCCTTCTTTCCCGTTCGTCACAAGAACAGGGCAAAGCTTCCGCACCTCTTCAACATCCATAAACGGCGCTTCTTCAGCAGAAGCCTTCAGAAACCCAATTCGAGGCAATAA

mRNA sequence

CAACCCGACTTCCAAAATAACTAATCGCTAGACCGTGAACAAACCAAGATGATGTTCTCCTCATGGCTAACAAATACAGCACAACACAGACGCATTATGATACGAACAACCAAGTTCAAAATTCAAAAACAAACCTGCAAGATTCTGGATTCGAACTGGGGCAGACCCATTTGAGAGACTGTCAAAGATCCAAACAAATTCCCAAGCAATGCAGCATCCGATACAGCCAATCCCGCCGTGAATCCCGCCGCAAACCCACCCAAGAAGCAGTCACCGGCTCCAGTAGGATCGAGCTCAGCCGCCGTGAACGGCGCAATCTGCAACTGGCCGCCGTTCGAATACACCGTACACCCTTCTTTCCCGTTCGTCACAAGAACAGGGCAAAGCTTCCGCACCTCTTCAACATCCATAAACGGCGCTTCTTCAGCAGAAGCCTTCAGAAACCCAATTCGAGGCAATAA

Coding sequence (CDS)

ATGGCTAACAAATACAGCACAACACAGACGCATTATGATACGAACAACCAAGTTCAAAATTCAAAAACAAACCTGCAAGATTCTGGATTCGAACTGGGGCAGACCCATTTGAGAGACTGTCAAAGATCCAAACAAATTCCCAAGCAATGCAGCATCCGATACAGCCAATCCCGCCGTGAATCCCGCCGCAAACCCACCCAAGAAGCAGTCACCGGCTCCAGTAGGATCGAGCTCAGCCGCCGTGAACGGCGCAATCTGCAACTGGCCGCCGTTCGAATACACCGTACACCCTTCTTTCCCGTTCGTCACAAGAACAGGGCAAAGCTTCCGCACCTCTTCAACATCCATAAACGGCGCTTCTTCAGCAGAAGCCTTCAGAAACCCAATTCGAGGCAATAA

Protein sequence

MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRESRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRFFSRSLQKPNSRQ
Homology
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BLAST of Carg20602-RA vs. NCBI nr
Match: KAG7019137.1 (hypothetical protein SDJN02_18095 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.8 bits (652), Expect = 2.1e-64
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRE 60
           MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRE
Sbjct: 1   MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRE 60

Query: 61  SRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRF 120
           SRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRF
Sbjct: 61  SRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRF 120

Query: 121 FSRSLQKPNSRQ 133
           FSRSLQKPNSRQ
Sbjct: 121 FSRSLQKPNSRQ 132

The following BLAST results are available for this feature:
BLAST of Carg20602-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019137.12.1e-64100.00hypothetical protein SDJN02_18095 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg20602-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20602-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20602-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg20602Carg20602gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20602-RA:1Carg20602-RA:1exon
Carg20602-RA:2Carg20602-RA:2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20602-RA:five_prime_utrCarg20602-RA:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20602-RA:cdsCarg20602-RA:cdsCDS
Carg20602-RA:cdsCarg20602-RA:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg20602-RACarg20602-RA-proteinpolypeptide