Carg20602 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20602
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr13: 337108 .. 337636 (+)
RNA-Seq Expression	Carg20602
Synteny	Carg20602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCCGACTTCCAAAATAACTAATCGCTAGACCGTGAACAAACCAAGATGATGTTCTCCTCATGGCTAACAAATACAGCACAACACAGACGCATTATGATACGAACAACCAGTAAAAATCAAAGTTCCATAGCTTCAGAACAAATTATTGACTTCTAAAATCATCAAGTGTTCATCCAGAGTTCAAAATTCAAAAACAAACCTGCAAGATTCTGGATTCGAACTGGGGCAGACCCATTTGAGAGACTGTCAAAGATCCAAACAAATTCCCAAGCAATGCAGCATCCGATACAGCCAATCCCGCCGTGAATCCCGCCGCAAACCCACCCAAGAAGCAGTCACCGGCTCCAGTAGGATCGAGCTCAGCCGCCGTGAACGGCGCAATCTGCAACTGGCCGCCGTTCGAATACACCGTACACCCTTCTTTCCCGTTCGTCACAAGAACAGGGCAAAGCTTCCGCACCTCTTCAACATCCATAAACGGCGCTTCTTCAGCAGAAGCCTTCAGAAACCCAATTCGAGGCAATAA

mRNA sequence

CAACCCGACTTCCAAAATAACTAATCGCTAGACCGTGAACAAACCAAGATGATGTTCTCCTCATGGCTAACAAATACAGCACAACACAGACGCATTATGATACGAACAACCAAGTTCAAAATTCAAAAACAAACCTGCAAGATTCTGGATTCGAACTGGGGCAGACCCATTTGAGAGACTGTCAAAGATCCAAACAAATTCCCAAGCAATGCAGCATCCGATACAGCCAATCCCGCCGTGAATCCCGCCGCAAACCCACCCAAGAAGCAGTCACCGGCTCCAGTAGGATCGAGCTCAGCCGCCGTGAACGGCGCAATCTGCAACTGGCCGCCGTTCGAATACACCGTACACCCTTCTTTCCCGTTCGTCACAAGAACAGGGCAAAGCTTCCGCACCTCTTCAACATCCATAAACGGCGCTTCTTCAGCAGAAGCCTTCAGAAACCCAATTCGAGGCAATAA

Coding sequence (CDS)

ATGGCTAACAAATACAGCACAACACAGACGCATTATGATACGAACAACCAAGTTCAAAATTCAAAAACAAACCTGCAAGATTCTGGATTCGAACTGGGGCAGACCCATTTGAGAGACTGTCAAAGATCCAAACAAATTCCCAAGCAATGCAGCATCCGATACAGCCAATCCCGCCGTGAATCCCGCCGCAAACCCACCCAAGAAGCAGTCACCGGCTCCAGTAGGATCGAGCTCAGCCGCCGTGAACGGCGCAATCTGCAACTGGCCGCCGTTCGAATACACCGTACACCCTTCTTTCCCGTTCGTCACAAGAACAGGGCAAAGCTTCCGCACCTCTTCAACATCCATAAACGGCGCTTCTTCAGCAGAAGCCTTCAGAAACCCAATTCGAGGCAATAA

Protein sequence

MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRESRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRFFSRSLQKPNSRQ

Homology

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BLAST of Carg20602 vs. NCBI nr
Match: KAG7019137.1 (hypothetical protein SDJN02_18095 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.8 bits (652), Expect = 2.1e-64
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRE 60
           MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRE
Sbjct: 1   MANKYSTTQTHYDTNNQVQNSKTNLQDSGFELGQTHLRDCQRSKQIPKQCSIRYSQSRRE 60

Query: 61  SRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRF 120
           SRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRF
Sbjct: 61  SRRKPTQEAVTGSSRIELSRRERRNLQLAAVRIHRTPFFPVRHKNRAKLPHLFNIHKRRF 120

Query: 121 FSRSLQKPNSRQ 133
           FSRSLQKPNSRQ
Sbjct: 121 FSRSLQKPNSRQ 132

The following BLAST results are available for this feature:

BLAST of Carg20602 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019137.1	2.1e-64	100.00	hypothetical protein SDJN02_18095 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg20602 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20602 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg20602 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20602-RA	Carg20602-RA	mRNA