Carg20299-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20299-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 4385381 .. 4386364 (-)
Sequence length270
RNA-Seq ExpressionCarg20299-RA
SyntenyCarg20299-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGTAAATTGGAGGGTTACGTTGGAATTTCACAAACGACACTGGACATGACATTGTTTACATCCACGTGGCGGGTGTCAGGGCGTTTGAAGTACTCGTGGGTCGGTTTGGTTTGAAAAGACGGTAAGGGCTACCGGTAGGTTCGGTGACCGGGGCCAATGAGAGTTGGGGTTTAAGCGAGATTGGGAGATTTTTTTTTTTTTTTTCTTTTTCAAGGGGGTTTTTGGTGATGGCAATCGGTACTTTAACGGAGAGTTGAAAGCAAAATCCACATTTGGAGCAACGTTTGTCCAGATTTTGATGGGATTGAACAAAAGAAGAAATCACGGAGAACGAATGTGGTAAGAAAACGGATCGACTTTTTCAATTTTCTTCTGCGTGTTTGTCCGAATTTCAAAACGTTCGAGGAAGAGATTTGAGATTCGATCGATGTTTGTGAGCATGCAATTTCGATTCATTGTATTCGATTTTGTTTCTTTCCTTTTTTTTCTTTCTTTTTTTTTTTTTTTTGTCCTGACGAGTTTTGATTTTCAAATTTTTCATCTCTTCAGAACCGAGGGTTTGGTTGTGTTGCATATTCTTCACCATCATTTCTTTTACAGGATCATGGATCTCTATGAAAATTCTTCTAATACCTGTATTACCGATTCTTTCATTCGTTGATCATGATCACTCGTAATCTTTGGGGTTCAGTTGTGGTTTGGAATTTTGAGGTTTCTTCTTTTCCCATTCAGCCCCTGCAAGAACCATTCACTTATCCGTCGGTATTTTAAGAATCGGATCTCTAGGGGTTTAGTAGACAGTATGGTAATTCTTAGTGCACCCGAAATATTTAAATTCCCTGCAGCTGATCGTGTGATATAGAGTGGTTTTTACCTTAACAGCTGTTCTCACTCCAGTGTTCCTTCTGAGCCTTTCATATTAATGAACTACATCTATTTGCTTGCAGGACCTTGTTCATTAGCCTAAATCTCGAGTGA

mRNA sequence

ATGACACGTAAATTGGAGGGTTACGTTGGAATTTCACAAACGACACTGGACATGACATTGTTTACATCCACGTGGCGGGTGTCAGGGCGTTTGAAGTACTCGTGGGTCGGTTTGGGGGTTTTTGGTGATGGCAATCGGTACTTTAACGGAGAGTTGAAAGCAAAATCCACATTTGGAGCAACGTTTGTCCAGATTTTGATGGGATTGAACAAAAGAAGAAATCACGGAGAACGAATGTGGACCTTGTTCATTAGCCTAAATCTCGAGTGA

Coding sequence (CDS)

ATGACACGTAAATTGGAGGGTTACGTTGGAATTTCACAAACGACACTGGACATGACATTGTTTACATCCACGTGGCGGGTGTCAGGGCGTTTGAAGTACTCGTGGGTCGGTTTGGGGGTTTTTGGTGATGGCAATCGGTACTTTAACGGAGAGTTGAAAGCAAAATCCACATTTGGAGCAACGTTTGTCCAGATTTTGATGGGATTGAACAAAAGAAGAAATCACGGAGAACGAATGTGGACCTTGTTCATTAGCCTAAATCTCGAGTGA

Protein sequence

MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGATFVQILMGLNKRRNHGERMWTLFISLNLE
Homology
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BLAST of Carg20299-RA vs. NCBI nr
Match: KAG7035400.1 (hypothetical protein SDJN02_02196, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGA 60
          MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGA
Sbjct: 1  MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGA 60

Query: 61 TFVQILMGLNKRRNHGERMWTLFISLNLE 90
          TFVQILMGLNKRRNHGERMWTLFISLNLE
Sbjct: 61 TFVQILMGLNKRRNHGERMWTLFISLNLE 89

The following BLAST results are available for this feature:
BLAST of Carg20299-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035400.11.4e-43100.00hypothetical protein SDJN02_02196, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20299-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20299-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20299-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg20299Carg20299gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20299-RA:3Carg20299-RA:3exon
Carg20299-RA:2Carg20299-RA:2exon
Carg20299-RA:1Carg20299-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20299-RA:cdsCarg20299-RA:cds_3CDS
Carg20299-RA:cdsCarg20299-RA:cds_2CDS
Carg20299-RA:cdsCarg20299-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg20299-RACarg20299-RA-proteinpolypeptide