Carg20299 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20299
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 4385381 .. 4386364 (-)
RNA-Seq ExpressionCarg20299
SyntenyCarg20299
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGTAAATTGGAGGGTTACGTTGGAATTTCACAAACGACACTGGACATGACATTGTTTACATCCACGTGGCGGGTGTCAGGGCGTTTGAAGTACTCGTGGGTCGGTTTGGTTTGAAAAGACGGTAAGGGCTACCGGTAGGTTCGGTGACCGGGGCCAATGAGAGTTGGGGTTTAAGCGAGATTGGGAGATTTTTTTTTTTTTTTTCTTTTTCAAGGGGGTTTTTGGTGATGGCAATCGGTACTTTAACGGAGAGTTGAAAGCAAAATCCACATTTGGAGCAACGTTTGTCCAGATTTTGATGGGATTGAACAAAAGAAGAAATCACGGAGAACGAATGTGGTAAGAAAACGGATCGACTTTTTCAATTTTCTTCTGCGTGTTTGTCCGAATTTCAAAACGTTCGAGGAAGAGATTTGAGATTCGATCGATGTTTGTGAGCATGCAATTTCGATTCATTGTATTCGATTTTGTTTCTTTCCTTTTTTTTCTTTCTTTTTTTTTTTTTTTTGTCCTGACGAGTTTTGATTTTCAAATTTTTCATCTCTTCAGAACCGAGGGTTTGGTTGTGTTGCATATTCTTCACCATCATTTCTTTTACAGGATCATGGATCTCTATGAAAATTCTTCTAATACCTGTATTACCGATTCTTTCATTCGTTGATCATGATCACTCGTAATCTTTGGGGTTCAGTTGTGGTTTGGAATTTTGAGGTTTCTTCTTTTCCCATTCAGCCCCTGCAAGAACCATTCACTTATCCGTCGGTATTTTAAGAATCGGATCTCTAGGGGTTTAGTAGACAGTATGGTAATTCTTAGTGCACCCGAAATATTTAAATTCCCTGCAGCTGATCGTGTGATATAGAGTGGTTTTTACCTTAACAGCTGTTCTCACTCCAGTGTTCCTTCTGAGCCTTTCATATTAATGAACTACATCTATTTGCTTGCAGGACCTTGTTCATTAGCCTAAATCTCGAGTGA

mRNA sequence

ATGACACGTAAATTGGAGGGTTACGTTGGAATTTCACAAACGACACTGGACATGACATTGTTTACATCCACGTGGCGGGTGTCAGGGCGTTTGAAGTACTCGTGGGTCGGTTTGGGGGTTTTTGGTGATGGCAATCGGTACTTTAACGGAGAGTTGAAAGCAAAATCCACATTTGGAGCAACGTTTGTCCAGATTTTGATGGGATTGAACAAAAGAAGAAATCACGGAGAACGAATGTGGACCTTGTTCATTAGCCTAAATCTCGAGTGA

Coding sequence (CDS)

ATGACACGTAAATTGGAGGGTTACGTTGGAATTTCACAAACGACACTGGACATGACATTGTTTACATCCACGTGGCGGGTGTCAGGGCGTTTGAAGTACTCGTGGGTCGGTTTGGGGGTTTTTGGTGATGGCAATCGGTACTTTAACGGAGAGTTGAAAGCAAAATCCACATTTGGAGCAACGTTTGTCCAGATTTTGATGGGATTGAACAAAAGAAGAAATCACGGAGAACGAATGTGGACCTTGTTCATTAGCCTAAATCTCGAGTGA

Protein sequence

MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGATFVQILMGLNKRRNHGERMWTLFISLNLE
Homology
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BLAST of Carg20299 vs. NCBI nr
Match: KAG7035400.1 (hypothetical protein SDJN02_02196, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGA 60
          MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGA
Sbjct: 1  MTRKLEGYVGISQTTLDMTLFTSTWRVSGRLKYSWVGLGVFGDGNRYFNGELKAKSTFGA 60

Query: 61 TFVQILMGLNKRRNHGERMWTLFISLNLE 90
          TFVQILMGLNKRRNHGERMWTLFISLNLE
Sbjct: 61 TFVQILMGLNKRRNHGERMWTLFISLNLE 89

The following BLAST results are available for this feature:
BLAST of Carg20299 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035400.11.4e-43100.00hypothetical protein SDJN02_02196, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20299 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20299 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20299 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20299-RACarg20299-RAmRNA