Carg20250-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20250-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 4698163 .. 4700652 (-)
Sequence length231
RNA-Seq ExpressionCarg20250-RA
SyntenyCarg20250-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCGTTTGCCTAGTTTCTTAGTGATAAAAATGTTTGGAAAGTACGGGTAGGACGTTATGTTGATTCATTATAATGCTGGAACAAGGTTGCCACCAATTTGATCGTGCTCCAGCCAGCACCTAATTGATACAATGATGTCTATGACATTTACCTATATCGATTGAAGTTCTACAGGTTATGGAATATGTTTTGATTTTTTTTTTTTAATTATTATTATTATTATTTAATATATCTGTGAGTGTCTAAGTCCACTTGCACGCAATTCGACTAATCTACGAGACAACTGCCCAACCCTACTACATTTGGTTGTAAAAAAAATGGCATCTACCATAAATTGAACTAGTTCTCTCTAAGTTTTCTGGTCCTTGCAACTCTTGATGGTTATAGCCACAAACATTTTGAGATTGAACCTTTGCATGCTCTAACAAAAATTCTGTTGATGCATCGACGATTGTGGTAGACTAAAGTTTCAAAGATTGCAAAACACTAGATCTCGGAACTCTTGGAACACAATGGCTATTAAAACAATGGAACTGTGGTATGTTCTAAATATGGAGAATAAACATTTCTATGGACTAACATATTTTATTGTCACGTGAATGTTTCATTATTCCAAACTTTCAAGTACTGCAAGCTGTGGAAGGAAAAAAGAAAAAGTTGACCTGAAGGTTTGTAATAAAATGTTATATCCTGTCCTAAGACTTGGTCTACTTCAGGAAAAATGAAAATTTGGAGTTGATTTATGTTTTTACATTTCAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGGTTCTCTAGAACCTTTTTGTGGGCATTTTTGCAAGTGGATGGTTGAAAGAAAGCAATCTCGATGCTGTCAAATTAAGGAAGGTGGTTTGCTAAAACACTTGTCATTTTAAAATTGCAGATATGTTTCCCAGTAACTTATGCTCTTTCTAGTAGATTCTCCATTCCCATTAGCTTATTTTAGTGTGTAGATGATTTAACTAATCCTACCCACTTTGTATTTTATATTTTAAAACCTGATCGAGATCCACCAATTATCTTGAACTTTGAGAAACAAGGAATAAATAATGCAGCAACTTATCGAATCCTTCGACAGAGAAAAGGAATATTGGCCCTGCAATTGTCACAAACGAAGAACAAATCAAAGAAAAGAAAAGAAAAGCTGTAGAAACATAGAAACATGAAGCCAGCCAGTTAGAAACAGATGTTTTCACCTTGAAATTGTCCTTTACTCTACAAATAAAATCCTGATTTTACCTTCTGTAATTCCTGTCTTTGTTGGTTGTCAAATTTACCACGTGTTAGTTATATAAGGTTAAGTTATATTATTGGCTGTCTCTTGACCATACCTTGCTTTGGACATAATATCAAAAAGAAAACAAAATGTGCTTTATATGATGATAAGATTCATGTTGGGTGGAGTGACAATGCCATCAAAACACATACCTTTTAGTTCAACCCAAAAACCTTCAAATGGAAGAATGAAACACAAATATTAACCAAAAGCCCTACCTGCTGTTCCCTGTATCATTGCTTTTTAAAAACTATGATAAGATTCATCTCTCGGAATAAAATCATATTTAGATTGAATTCTGGAAACCCTTCAAAAGGAAGAGTGGGGTAAAATTCTCACCCAATTACTTCCCTGTCCCACATACCTACCTACTAAACATGCAGAACAGTTTGTATCTTTTTCTTTTAGTTCTTCATGATTTTGTTTTCTTTTCTTTGGGTAATAAACCAATAGAAGGTTAAAGAAAGGGGGGTGGGGGGAAAGCAATGCATAGAAGAAAAGGACTGGAAAGTAGAAACTGGGGTGATTTTGTTTTAGCCCAAGTAGACATAAAAGTACTTGAAATCTTCCTCCACTGCTTTATTTTAACAAGAAAAAGGTTGGTTTGTAGCTGTGGGGAGTCCAAACATTTGACATTTTCTGTTCCTCAAAACTTTTTTAAGGATTCATTCTCTTTTCTGCCCTTTTTTTTCTTCCCATTTGGACTCATTATCCTTTCTCTTTCTCTCTCTTGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGGTATTTTTTATGCTTTTAAAAGAATTGCAAATTGGTATTCAAATTTGGTACTTCTTTTTTTGTTTTTCCAATGAATGTCTGAACATGTTTAGCTTTTAAGTACAGAAATGATCCGATGCTGTTTGCAATAAATTAATGAGGCATTTAGTCACTAATACATTGGACTTAGCTTTTCTTTATTATTAACTTTCGGACATCTTAATCTCCTCGAAATGTTTTGTCGCTTTATATTATATTGTTATAAATATACGATGCTCCTTTTATATTTTATTCTATTTTATTTGTGGTATCATGTTCAGTGCACTCACGCATTTTATTTTGATAGTTATAATGTTCGTTCTTGA

mRNA sequence

ATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCTACTGCAAGCTGTGGAAGGAAAAAAGAAAAAGTTGACCTGAAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGTGCACTCACGCATTTTATTTTGATAGTTATAATGTTCGTTCTTGA

Coding sequence (CDS)

ATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCTACTGCAAGCTGTGGAAGGAAAAAAGAAAAAGTTGACCTGAAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGTGCACTCACGCATTTTATTTTGATAGTTATAATGTTCGTTCTTGA

Protein sequence

MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPATECTHAFYFDSYNVRS
Homology
[Close]
BLAST of Carg20250-RA vs. NCBI nr
Match: KAG7035448.1 (hypothetical protein SDJN02_02244, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPA 60
          MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPA
Sbjct: 1  MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPA 60

Query: 61 TECTHAFYFDSYNVRS 77
          TECTHAFYFDSYNVRS
Sbjct: 61 TECTHAFYFDSYNVRS 76

The following BLAST results are available for this feature:
BLAST of Carg20250-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035448.12.1e-37100.00hypothetical protein SDJN02_02244, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20250-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20250-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20250-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg20250Carg20250gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20250-RA:5Carg20250-RA:5exon
Carg20250-RA:4Carg20250-RA:4exon
Carg20250-RA:3Carg20250-RA:3exon
Carg20250-RA:2Carg20250-RA:2exon
Carg20250-RA:1Carg20250-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg20250-RA:cdsCarg20250-RA:cds_5CDS
Carg20250-RA:cdsCarg20250-RA:cds_4CDS
Carg20250-RA:cdsCarg20250-RA:cds_3CDS
Carg20250-RA:cdsCarg20250-RA:cds_2CDS
Carg20250-RA:cdsCarg20250-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg20250-RACarg20250-RA-proteinpolypeptide