Carg20250 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20250
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 4698163 .. 4700652 (-)
RNA-Seq ExpressionCarg20250
SyntenyCarg20250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCGTTTGCCTAGTTTCTTAGTGATAAAAATGTTTGGAAAGTACGGGTAGGACGTTATGTTGATTCATTATAATGCTGGAACAAGGTTGCCACCAATTTGATCGTGCTCCAGCCAGCACCTAATTGATACAATGATGTCTATGACATTTACCTATATCGATTGAAGTTCTACAGGTTATGGAATATGTTTTGATTTTTTTTTTTTAATTATTATTATTATTATTTAATATATCTGTGAGTGTCTAAGTCCACTTGCACGCAATTCGACTAATCTACGAGACAACTGCCCAACCCTACTACATTTGGTTGTAAAAAAAATGGCATCTACCATAAATTGAACTAGTTCTCTCTAAGTTTTCTGGTCCTTGCAACTCTTGATGGTTATAGCCACAAACATTTTGAGATTGAACCTTTGCATGCTCTAACAAAAATTCTGTTGATGCATCGACGATTGTGGTAGACTAAAGTTTCAAAGATTGCAAAACACTAGATCTCGGAACTCTTGGAACACAATGGCTATTAAAACAATGGAACTGTGGTATGTTCTAAATATGGAGAATAAACATTTCTATGGACTAACATATTTTATTGTCACGTGAATGTTTCATTATTCCAAACTTTCAAGTACTGCAAGCTGTGGAAGGAAAAAAGAAAAAGTTGACCTGAAGGTTTGTAATAAAATGTTATATCCTGTCCTAAGACTTGGTCTACTTCAGGAAAAATGAAAATTTGGAGTTGATTTATGTTTTTACATTTCAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGGTTCTCTAGAACCTTTTTGTGGGCATTTTTGCAAGTGGATGGTTGAAAGAAAGCAATCTCGATGCTGTCAAATTAAGGAAGGTGGTTTGCTAAAACACTTGTCATTTTAAAATTGCAGATATGTTTCCCAGTAACTTATGCTCTTTCTAGTAGATTCTCCATTCCCATTAGCTTATTTTAGTGTGTAGATGATTTAACTAATCCTACCCACTTTGTATTTTATATTTTAAAACCTGATCGAGATCCACCAATTATCTTGAACTTTGAGAAACAAGGAATAAATAATGCAGCAACTTATCGAATCCTTCGACAGAGAAAAGGAATATTGGCCCTGCAATTGTCACAAACGAAGAACAAATCAAAGAAAAGAAAAGAAAAGCTGTAGAAACATAGAAACATGAAGCCAGCCAGTTAGAAACAGATGTTTTCACCTTGAAATTGTCCTTTACTCTACAAATAAAATCCTGATTTTACCTTCTGTAATTCCTGTCTTTGTTGGTTGTCAAATTTACCACGTGTTAGTTATATAAGGTTAAGTTATATTATTGGCTGTCTCTTGACCATACCTTGCTTTGGACATAATATCAAAAAGAAAACAAAATGTGCTTTATATGATGATAAGATTCATGTTGGGTGGAGTGACAATGCCATCAAAACACATACCTTTTAGTTCAACCCAAAAACCTTCAAATGGAAGAATGAAACACAAATATTAACCAAAAGCCCTACCTGCTGTTCCCTGTATCATTGCTTTTTAAAAACTATGATAAGATTCATCTCTCGGAATAAAATCATATTTAGATTGAATTCTGGAAACCCTTCAAAAGGAAGAGTGGGGTAAAATTCTCACCCAATTACTTCCCTGTCCCACATACCTACCTACTAAACATGCAGAACAGTTTGTATCTTTTTCTTTTAGTTCTTCATGATTTTGTTTTCTTTTCTTTGGGTAATAAACCAATAGAAGGTTAAAGAAAGGGGGGTGGGGGGAAAGCAATGCATAGAAGAAAAGGACTGGAAAGTAGAAACTGGGGTGATTTTGTTTTAGCCCAAGTAGACATAAAAGTACTTGAAATCTTCCTCCACTGCTTTATTTTAACAAGAAAAAGGTTGGTTTGTAGCTGTGGGGAGTCCAAACATTTGACATTTTCTGTTCCTCAAAACTTTTTTAAGGATTCATTCTCTTTTCTGCCCTTTTTTTTCTTCCCATTTGGACTCATTATCCTTTCTCTTTCTCTCTCTTGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGGTATTTTTTATGCTTTTAAAAGAATTGCAAATTGGTATTCAAATTTGGTACTTCTTTTTTTGTTTTTCCAATGAATGTCTGAACATGTTTAGCTTTTAAGTACAGAAATGATCCGATGCTGTTTGCAATAAATTAATGAGGCATTTAGTCACTAATACATTGGACTTAGCTTTTCTTTATTATTAACTTTCGGACATCTTAATCTCCTCGAAATGTTTTGTCGCTTTATATTATATTGTTATAAATATACGATGCTCCTTTTATATTTTATTCTATTTTATTTGTGGTATCATGTTCAGTGCACTCACGCATTTTATTTTGATAGTTATAATGTTCGTTCTTGA

mRNA sequence

ATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCTACTGCAAGCTGTGGAAGGAAAAAAGAAAAAGTTGACCTGAAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGTGCACTCACGCATTTTATTTTGATAGTTATAATGTTCGTTCTTGA

Coding sequence (CDS)

ATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCTACTGCAAGCTGTGGAAGGAAAAAAGAAAAAGTTGACCTGAAGGGTTTTCTATCAAGGAAGATGGCTTGCTGGAAACCAGAGCAGATTGTGTTCTATTTGACATGTGACCCATTGACCCCGCCAGCAACTGAGTGCACTCACGCATTTTATTTTGATAGTTATAATGTTCGTTCTTGA

Protein sequence

MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPATECTHAFYFDSYNVRS
Homology
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BLAST of Carg20250 vs. NCBI nr
Match: KAG7035448.1 (hypothetical protein SDJN02_02244, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPA 60
          MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPA
Sbjct: 1  MEDGKDIKAADDFCGEESTASCGRKKEKVDLKGFLSRKMACWKPEQIVFYLTCDPLTPPA 60

Query: 61 TECTHAFYFDSYNVRS 77
          TECTHAFYFDSYNVRS
Sbjct: 61 TECTHAFYFDSYNVRS 76

The following BLAST results are available for this feature:
BLAST of Carg20250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035448.12.1e-37100.00hypothetical protein SDJN02_02244, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20250 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20250-RACarg20250-RAmRNA