Carg18696-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18696-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein trichome birefringence-like 14 isoform X1
Location	Carg_Chr17: 7405421 .. 7408674 (+)
Sequence length	914
RNA-Seq Expression	Carg18696-RA
Synteny	Carg18696-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTTCGGATCTAATCATTTTGAGAGGAGAGCTCTGTAGTTCTCTCTGAAAATCGAAAATGCCTCAGATTTTCTCCTAAGAAACAGCGTCAGTATCTGAATCTCCCAGTTTCCCTCATTTGGGTGCGTGATTTTCTTGTTTGATTCAGATTCTTTTAGTGCAATCTCCACTGTTTTAGCTTTTGCTTCCTTACCCTCTTCTTATTTTCCAAGAATTGCTAATGGGTCGTGTCGATCGGTGTGTCAATCGAGCGAAATCACATTTGGGTTATGCTCGATTGTGGCGCCTCTGTTTCTGCAGGACTCTGTTTGATCGAGTTAGCTTTGCATAGCTGATGATCTTAGCCTCTACTTACCAAATTGATATCTGTTTGAGAAAACCATGTGGCTGTTACCTTTTTCTTAGCTATTATAATGGCATTTAGCAGCAATCCATGGCTCATTTGCTTTCATAATGTTACTTAGGGAAATGGAGTTGTGTTTTTGTTTACTGGTTTGTCTGAAAATTTCTTATGTCGACACAGATGTATAGAGAGGCATATGTTGTCTATCAAATGAGGGAACATTTTCAATTCATGTGATATAAGCAAGAGATGAAAGGGGGGAACATCATCATGGTGAGGGGGGGACATCTTTCCATTGCCATGGTTGTTCTTATGTTTACAAGCATATTGTTATGGGGTTGGGATAAAAGCTATTTTGCTAGTTTTCTTCCACTGACAAGACAGCAGTATATGATACCACTTTCAGGTATTTTCCCAACTGATCATATTCTTTCTACCATTTAAGAAGTTTCTTGTGAATCTATGTTAAGAATGGGATGAAAATGGTAGAATTCTAAGCCTTCTTTCTTTGGCAACTTCACTTGAATGCTTAATTGTCATGAACTTTAATGATTTTCATTTATCTCTGTCTCGTTTTCTCTTAATTGTTCATAGCATTGTGTTTGTTGATTAATTTTCTATATCATGGCTTAGAATATGTAGTGGCCGTGTCAAATAGTTCCTCAACACCAAAGGATGAAATGGTTAAGTCAGAGAACAAAATGAAGGGAAGAAGTAATAATACCAATGAAAAAGAACAACCAGGAAAAGGTTCAGACTACTTTGATGCTGATTCTATCTCCAAGCCTACTCCTATCTCCAAAGGTAGAGTTTAGATTCTCAAAGTGTTAGGCACATATGTGTTTGTTCTTCCTAGTTTTACACTGAATTCAGCTTTTGATCTGTTTAAAAATGATATCCAGTTCATATCTAAGATATTGCTGCTCTTTCAGTTTGCAACTACGCCAAAGGTAGATGGGTTGAAGACAACAGGCGGCCATGGTATTCCGGGTTAGGATGCAAACAATGGCTATCAATAATGTGGGCCTGTAGACTTACAAAAAGAAAGGACTTTTCTTATGAAGGATATAGGTGGCAACCGGAAAATTGCTACATGCCTGAGTTTGAGCGTTCATCATTCCTTAGAAGGTACTTGAGATTTTATCCCTCCATGAGCGAAATGCTTGTGTGTATTGTTTGCTTAAACCTTGTTAGTTCTAGAGATTTGACTGCCATTTTGGTTCTTAGAATGCAGAACAAAACACTTGCATTTATAGGAGATTCATTAGGTAGGCAGCAGTTTCAATCTTTAATGTGTATGCTCACTGGCGGTGAAGAGAGCCCTGAAGTCGAAGACGTGGGGAAGGAATATGGTCTAGCTAAAGCTCCGGGGGCTCGTCGACCCGACGGATGGGTGTATCGGTTTCCAGACACGAACACCACCATTCTATACTACTGGTCAGCCAGCCTCTCTGATCTAGAACCTATTAATAGAACAGATCCAGCAACAAATATTGCAATGCATTTGGATCAACCCCCAGCTTTCATGAGAAAGTTCCTCCATGAGTTCAATGTGTTGGTTTTGAATACAGGACACCATTGGAATAGGGGAAAACTTGAAGCAAATAGGTGGGTGATGTATGTTGATGGAAAACCAGTGGAGGAAAATAAGCCTTTGGATATGGGGAAGGCCAAGAACTTGACTGTATACAGCATTGCCAAATGGCTCGACTCGCAACTTCCCCGACATCGACGTAATCTAAAAGTCTTCTTTAGGACAATTTCGCCAAGGCATTTCTTCAATGGGGATTGGAACACCGGAGGATCCTGTGATAATATGATTCCTATGTCTGGTGGGAGTGAGGTTGTCCAAGATGGATCTAGTGACATTGTTGTTGAAAGTGCTTTAAAGGGTACCAAGGTGAAGATCCTAGACATAACTGCCATCTCTCAGCTGCGCGACGAAGGGCACGTATCGCGCTATACCCGTCGAGCAATCTTAAACACAAGTGATTGCTTGCATTGGTGCTTGCCTGGCATACCAGACACATGGAATGAACTGCTACTTGCACAGATATAGTCTTGCATATCAGTGCTTTCAGAGTATACAAGATTCTTAGTAATGGTTATAGCTGAGAATCTATCAATCTACTTCAAATAGGCTGCCTGAAAGTACAATTGAAAGGATGTTACATGTTCTTCGTCCATGTATTCGAGAAAGCGAAGAAGCCGAGCTATTTCGAGTCGTTACAATATGTGTGGTGAAAAGTTTGCATCAATGGCTGCTCTGATCCATGAAAGGCAAACCCCTTCAAGTAAGGCTTTCTGCTTATTCCTTCTTCTTTTGATATGCATCATTGAGAATCCTGATTTCTTATGAGAATGGTTTGGGGATTGAATAGTAATGATCACTGTTGGCGATTTGGAACAATTTTTTAAGCACTTAGTTGCATGCTTTTTATATGTTTTAATCGTGTAACCATTAGAGAAACCAGGAAATAAAAATGTCACATGTATAAGTCTCCAAATAGGAACAAATCAATCCCAAAAGAACAGGAAAAAAGAACAGAGCTAAGAACTAGAAGAACATGTTCTACAAACACCCACAAGCCAAAAATATCAAAATCAATGGATCCAACACAAGGAAAAGCTTCATGTTCTTCAGCTTCGATGAATCGATTCAAGAACAGAGTTGATAATGAAAATCACAGGCGAGACAGATTTGCAGAAACTGGGAAATAAGAGACGATTATCGGAGCTTGAGGTGACTGTGAATCAGATTTTGGTTTGTGTTTGGAGGGCTGTTGTTTGTGTTTCATGTTTGAATGTTCTTCACCATGGGAGACCTTTGAAGATAGAGAAGGAAGGAAGCAACCCAGGAGAGCTGAGACTATGGGAGAAGAAGGCATCTTATTGCGCTTTGGGCTTTTAG

mRNA sequence

TACTTCGGATCTAATCATTTTGAGAGGAGAGCTCTGTAGTTCTCTCTGAAAATCGAAAATGCCTCAGATTTTCTCCTAAGAAACAGCGTCAGTATCTGAATCTCCCAGTTTCCCTCATTTGGATGTATAGAGAGGCATATGTTGTCTATCAAATGAGGGAACATTTTCAATTCATGTGATATAAGCAAGAGATGAAAGGGGGGAACATCATCATGGTGAGGGGGGGACATCTTTCCATTGCCATGGTTGTTCTTATGTTTACAAGCATATTGTTATGGGGTTGGGATAAAAGCTATTTTGCTAGTTTTCTTCCACTGACAAGACAGCAGTATATGATACCACTTTCAGAATATGTAGTGGCCGTGTCAAATAGTTCCTCAACACCAAAGGATGAAATGGTTAAGTCAGAGAACAAAATGAAGGGAAGAAGTAATAATACCAATGAAAAAGAACAACCAGGAAAAGGTTCAGACTACTTTGATGCTGATTCTATCTCCAAGCCTACTCCTATCTCCAAAGCTTTTGATCTGTTTAAAAATGATATCCAGTTCATATCTAAGATATTGCTGCTCTTTCAGTTTGCAACTACGCCAAAGGTAGATGGGTTGAAGACAACAGGCGGCCATGGTATTCCGGGTGGCAACCGGAAAATTGCTACATGCCTGAGTTTGAGCGTTCATCATTCCTTAGAAGGCGAGACAGATTTGCAGAAACTGGGAAATAAGAGACGATTATCGGAGCTTGAGGTGACTGTGAATCAGATTTTGGTTTGTGTTTGGAGGGCTGTTGTTTGTGTTTCATGTTTGAATGTTCTTCACCATGGGAGACCTTTGAAGATAGAGAAGGAAGGAAGCAACCCAGGAGAGCTGAGACTATGGGAGAAGAAGGCATCTTATTGCGCTTTGGGCTTTTAG

Coding sequence (CDS)

ATGAAAGGGGGGAACATCATCATGGTGAGGGGGGGACATCTTTCCATTGCCATGGTTGTTCTTATGTTTACAAGCATATTGTTATGGGGTTGGGATAAAAGCTATTTTGCTAGTTTTCTTCCACTGACAAGACAGCAGTATATGATACCACTTTCAGAATATGTAGTGGCCGTGTCAAATAGTTCCTCAACACCAAAGGATGAAATGGTTAAGTCAGAGAACAAAATGAAGGGAAGAAGTAATAATACCAATGAAAAAGAACAACCAGGAAAAGGTTCAGACTACTTTGATGCTGATTCTATCTCCAAGCCTACTCCTATCTCCAAAGCTTTTGATCTGTTTAAAAATGATATCCAGTTCATATCTAAGATATTGCTGCTCTTTCAGTTTGCAACTACGCCAAAGGTAGATGGGTTGAAGACAACAGGCGGCCATGGTATTCCGGGTGGCAACCGGAAAATTGCTACATGCCTGAGTTTGAGCGTTCATCATTCCTTAGAAGGCGAGACAGATTTGCAGAAACTGGGAAATAAGAGACGATTATCGGAGCTTGAGGTGACTGTGAATCAGATTTTGGTTTGTGTTTGGAGGGCTGTTGTTTGTGTTTCATGTTTGAATGTTCTTCACCATGGGAGACCTTTGAAGATAGAGAAGGAAGGAAGCAACCCAGGAGAGCTGAGACTATGGGAGAAGAAGGCATCTTATTGCGCTTTGGGCTTTTAG

Protein sequence

MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSNSSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFKNDIQFISKILLLFQFATTPKVDGLKTTGGHGIPGGNRKIATCLSLSVHHSLEGETDLQKLGNKRRLSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEKKASYCALGF

Homology

[Close]

BLAST of Carg18696-RA vs. NCBI nr
Match: KAG7014221.1 (hypothetical protein SDJN02_24396 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 479.6 bits (1233), Expect = 1.6e-131
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN
Sbjct: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFKNDIQF 120
           SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFKNDIQF
Sbjct: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFKNDIQF 120

Query: 121 ISKILLLFQFATTPKVDGLKTTGGHGIPGGNRKIATCLSLSVHHSLEGETDLQKLGNKRR 180
           ISKILLLFQFATTPKVDGLKTTGGHGIPGGNRKIATCLSLSVHHSLEGETDLQKLGNKRR
Sbjct: 121 ISKILLLFQFATTPKVDGLKTTGGHGIPGGNRKIATCLSLSVHHSLEGETDLQKLGNKRR 180

Query: 181 LSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEKKASYCALGF 240
           LSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEKKASYCALGF
Sbjct: 181 LSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEKKASYCALGF 240

[Close]

BLAST of Carg18696-RA vs. NCBI nr
Match: KAG6575669.1 (hypothetical protein SDJN03_26308, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.8 bits (839), Expect = 7.9e-86
Identity = 179/249 (71.89%), Postives = 192/249 (77.11%), Query Frame = 0


Query: 8   MVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSNSSSTPKD 67
           MVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSNSSSTPKD
Sbjct: 1   MVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSNSSSTPKD 60

Query: 68  EMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFKN----------- 127
           EMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISK  +  K            
Sbjct: 61  EMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKVCNYAKGRWVEDNRRPWY 120

Query: 128 ---DIQFISKILLLFQ--FATTPKVDGLKTTGGHGIPGGNRKIATCLSLSVHHSLEGETD 187
                  I ++L + +     + + +  +      I  G +  +    +    +   ETD
Sbjct: 121 SGLPESTIERMLHVLRPCIRESEEAELFRVV---TIMCGEKFASMAALIHERQTPSSETD 180

Query: 188 LQKLGNKRRLSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEK 241
           LQKLGNKRRLSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEK
Sbjct: 181 LQKLGNKRRLSELEVTVNQILVCVWRAVVCVSCLNVLHHGRPLKIEKEGSNPGELRLWEK 240

[Close]

BLAST of Carg18696-RA vs. NCBI nr
Match: XP_022954312.1 (protein trichome birefringence-like 14 isoform X1 [Cucurbita moschata] >XP_022954313.1 protein trichome birefringence-like 14 isoform X1 [Cucurbita moschata])

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-50
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNIIMVRGGHLSIAMVVLMFT+ILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN
Sbjct: 1   MKGGNIIMVRGGHLSIAMVVLMFTTILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFK 116
           +SSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISK  +  K
Sbjct: 61  NSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKVCNYAK 115

[Close]

BLAST of Carg18696-RA vs. NCBI nr
Match: XP_023548323.1 (protein trichome birefringence-like 14 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548324.1 protein trichome birefringence-like 14 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-49
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNII V+GGHLSIAMVVLMFT+ILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN
Sbjct: 1   MKGGNIIRVKGGHLSIAMVVLMFTTILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFK 116
           SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISK  +  K
Sbjct: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKVCNYAK 115

[Close]

BLAST of Carg18696-RA vs. NCBI nr
Match: XP_022954314.1 (protein trichome birefringence-like 14 isoform X2 [Cucurbita moschata])

HSP 1 Score: 198.4 bits (503), Expect = 7.2e-47
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNIIMVRGGHLSIAMVVLMFT+ILLWGWDKSYFASFLPLTRQQYMIPLS   VAVSN
Sbjct: 1   MKGGNIIMVRGGHLSIAMVVLMFTTILLWGWDKSYFASFLPLTRQQYMIPLS---VAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFK 116
           +SSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISK  +  K
Sbjct: 61  NSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKVCNYAK 112

[Close]

BLAST of Carg18696-RA vs. ExPASy TrEMBL
Match: A0A6J1GQN9 (protein trichome birefringence-like 14 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456598 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNIIMVRGGHLSIAMVVLMFT+ILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN
Sbjct: 1   MKGGNIIMVRGGHLSIAMVVLMFTTILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFK 116
           +SSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISK  +  K
Sbjct: 61  NSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKVCNYAK 115

[Close]

BLAST of Carg18696-RA vs. ExPASy TrEMBL
Match: A0A6J1GSM2 (protein trichome birefringence-like 14 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456598 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.5e-47
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNIIMVRGGHLSIAMVVLMFT+ILLWGWDKSYFASFLPLTRQQYMIPLS   VAVSN
Sbjct: 1   MKGGNIIMVRGGHLSIAMVVLMFTTILLWGWDKSYFASFLPLTRQQYMIPLS---VAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKAFDLFK 116
           +SSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISK  +  K
Sbjct: 61  NSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPISKVCNYAK 112

[Close]

BLAST of Carg18696-RA vs. ExPASy TrEMBL
Match: A0A6J1GS35 (protein trichome birefringence-like 14 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111456598 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 7.8e-47
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNIIMVRGGHLSIAMVVLMFT+ILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN
Sbjct: 1   MKGGNIIMVRGGHLSIAMVVLMFTTILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60

Query: 61  SSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISK 104
           +SSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISK
Sbjct: 61  NSSTPKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISK 103

[Close]

BLAST of Carg18696-RA vs. ExPASy TrEMBL
Match: A0A6J1JW29 (protein trichome birefringence-like 14 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488394 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-38
Identity = 91/111 (81.98%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNII VRGGHLSIA+VVLMFT+ILLW WDKSYFASFLPLTRQQYMIPLSEYVV V+N
Sbjct: 1   MKGGNIIRVRGGHLSIALVVLMFTTILLWSWDKSYFASFLPLTRQQYMIPLSEYVVNVAN 60

Query: 61  SSST---PKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISKPTPIS 109
           SSST   PKDE+  SE+KMK RSNN +EKEQPGKGSDY DADSISK T +S
Sbjct: 61  SSSTSTNPKDEIGNSEDKMKERSNNRDEKEQPGKGSDYSDADSISKGTALS 111

[Close]

BLAST of Carg18696-RA vs. ExPASy TrEMBL
Match: A0A6J1JS22 (protein trichome birefringence-like 14 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111488394 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-37
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MKGGNIIMVRGGHLSIAMVVLMFTSILLWGWDKSYFASFLPLTRQQYMIPLSEYVVAVSN 60
           MKGGNII VRGGHLSIA+VVLMFT+ILLW WDKSYFASFLPLTRQQYMIPLSEYVV V+N
Sbjct: 1   MKGGNIIRVRGGHLSIALVVLMFTTILLWSWDKSYFASFLPLTRQQYMIPLSEYVVNVAN 60

Query: 61  SSST---PKDEMVKSENKMKGRSNNTNEKEQPGKGSDYFDADSISK 104
           SSST   PKDE+  SE+KMK RSNN +EKEQPGKGSDY DADSISK
Sbjct: 61  SSSTSTNPKDEIGNSEDKMKERSNNRDEKEQPGKGSDYSDADSISK 106

The following BLAST results are available for this feature:

BLAST of Carg18696-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014221.1	1.6e-131	100.00	hypothetical protein SDJN02_24396 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575669.1	7.9e-86	71.89	hypothetical protein SDJN03_26308, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954312.1	2.4e-50	93.91	protein trichome birefringence-like 14 isoform X1 [Cucurbita moschata] >XP_02295...	[more]
XP_023548323.1	1.2e-49	93.04	protein trichome birefringence-like 14 isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]
XP_022954314.1	7.2e-47	91.30	protein trichome birefringence-like 14 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg18696-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18696-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQN9	1.2e-50	93.91	protein trichome birefringence-like 14 isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1GSM2	3.5e-47	91.30	protein trichome birefringence-like 14 isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1GS35	7.8e-47	98.06	protein trichome birefringence-like 14 isoform X3 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JW29	3.9e-38	81.98	protein trichome birefringence-like 14 isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1JS22	3.3e-37	83.96	protein trichome birefringence-like 14 isoform X3 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Carg18696-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18696	Carg18696	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18696-RA:1	Carg18696-RA:1	exon
Carg18696-RA:2	Carg18696-RA:2	exon
Carg18696-RA:3	Carg18696-RA:3	exon
Carg18696-RA:4	Carg18696-RA:4	exon
Carg18696-RA:5	Carg18696-RA:5	exon
Carg18696-RA:6	Carg18696-RA:6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18696-RA:five_prime_utr	Carg18696-RA:five_prime_utr	five_prime_UTR
Carg18696-RA:five_prime_utr	Carg18696-RA:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18696-RA:cds	Carg18696-RA:cds	CDS
Carg18696-RA:cds	Carg18696-RA:cds_2	CDS
Carg18696-RA:cds	Carg18696-RA:cds_3	CDS
Carg18696-RA:cds	Carg18696-RA:cds_4	CDS
Carg18696-RA:cds	Carg18696-RA:cds_5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18696-RA	Carg18696-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane