Carg17432-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17432-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	GRF1-interacting factor 1-like
Location	Carg_Chr12: 10809995 .. 10814866 (-)
Sequence length	690
RNA-Seq Expression	Carg17432-RA
Synteny	Carg17432-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTATTATCCCAACAACGTCACTACTGATCATATTCAACAGGTTCTTCTTCTTTTTCTTCCTTTTTTCTTTTTTCCCCTTTTTTCATCTGGGTTTTCCTTGTTCTTCATGTTTTTTAATCTCGTTCATGTGGGTTTTCCTTGTTTTTCATGTATGAGATGATTCATAACAGCTTCTTCTTTCTTCTTCTTCTTCCAATGTTTTGATTTCTTTCATGTGGGTTTTCCTTGTTTTTTATGTTAGAGATGATTCATAATATGTTCTTCTTCTTCTTCTTCCATTTTTTATGATCTCTTTCATGTGGGTTTTCCTTGTTCTTCATGTTAGATATGATTCATAACTTGTTTTTCATTCTTTTAATCTCTTTCATGTGGATTTTCCTTGTTTTTCATGTTAGAAATGATTCATAACAGGTTCTTCTTCTTCTTCTTCTTCTTCCATTTTTTTGATCTCTTTCATGTGGGTTTTCCTTGTTCTTCATGTTAGAGATGATTCATAACATGTTCTTCTTTCTTCATTTTTTGATCTCTTTCATGTGGGTTTTCCTTGTTCTTCATGTTAGAGATGATTCATAACATGTTCTTCTTCTTCTTCTTCCATTTCTTTTGATCTCTTTCATGTGGGTTTTCCTTGTTCTTCATGTTAGAAATGATTCATAACATGTTCTTCTTCATCTTCTTCTTCCAATTTTTTGATCTTTTTCATCTGGGTTTTCCTTGTTCTTCATGTTAGAGATGATTCATAACTTATTTTTTCATTCTTTTAATCTCTTTCATATGGGTTTTCCTTGTTCTTCATGTTAGAGATGATTCATAAGAATGTCTTGCTTCCTTTATCCTATTGGGTTTAATTGTTGCCTTTTTCACGTGCTCTTGTCTCTATTGACTGATTTTAATATCTAATACCAAAAGGTGAGACCAGGCCATCAATGGCTTTTCTCTTGTTTATTTCCATCTCTTTTCCTGATTAAGTATTTGTTTCCATATTGGTCAAAGCTTAATTACTTTTTATCTTTCAATTCCATGATTGATTTCTAAACCCTTTTGGCCTTAATCTTAATGGGAAAAGGAATCAGAACTGGTTGGATGGTGCATTTTTTTTCCCTTTTCTTCTCTCTTTCTCTGTTCATCAAGTGGGGCAAAAAGTGGCTCATGAAACTGTTGAGAGCTTGAGCTTTTGAGGACTATAAGGTTAATTTAAGGTTTTGGATTTTATGTTCTTTCATGTTGGTCTAAACTTGTTCTAAATGAATGTACCATGTAGAAGTTCTTAACTAAGATTTATGTTTTTGGTAAAAGGGTTTCTTTAGAAAGAAAATAATAGCTTTTCTTTGGGACTATGAATGTGATATCAGCTTCATTAATTACTAGAAATCTTGATTCAAATTGTTTGTGAGAGCCCACATCGTTGGGAGGAGAACCAAAAACCCTTTATAAGGGTATGAAAGTCTCTCCCAAGCAAACACGTTTAAAATCCCTGAGGAAAGTTAAAAAAGAAAAACCCAAAGAGAATAATACTTGCTAGTTGTGGGCTTGGGCCGTTACAAATGGTATCAGAGTTAAGACATCGGGCGACGTGCCAGCGAGGAGGCTGTTCCCCGAAAGGGGTTAGACACGAGGCGGTGTGCAAGTAAGGACACTGGTCCCGAATGAGGGTGGATTGGGGTCCCACATCGATTGGATGAAGGAACGAGTTCTAGCGAGGACGTTGGACTCTGAAGGGCGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGGAGGTGCGGAAACCTCTCTCTAGTAGACGCGTTTTAGAATCCTTGAGGGAAGTCAAAAGGACCGCCGATAGCGGTGGGCTTAGGCCGTTACATTATTCTTTTAGTTTGTAAACTTCTTTGATGAGGTTTCTTAAGAAAATTATTCATGAATTTTGGCCGGAATTCATATAATCTCACTGGAATTGACCAAGATTCAAGTGATTTTTTGGTATTTTTGAACAGTTTTGTGATGAACTATAATGAGGATAATGTTAAAACAGTCTACATCAGTAGAGAAGTAAAAAGTGTTTATAATGGAAGACAGAAGAGCTTGAATAGTGATTGGTCAACCATGAAACAGTATTATAAGTTGCTGTCTGGTTCTGTTTGTGTTTCTGTTTGTGTTTCAGCTCATGTTTTTTAAGGTTTATGATGTCTTATTTGATCATCTATGTTGCAGTATCTGGATGAGAACAAGTCGCTGATATTGAAGATTGTTGAGAGCCAAAACTCGGGAAAATTGAATGAATGTGCAGAGTAAGTATATGGTAGAATCATTTTGATAAATGTGAATTTTCTTTTTCGGTTTGATCAATTCGGTTTCTAGGATGAAGAAACAGAGTAAGTATATCGGGCTTTCCCTTCTGGGCTTCCCCTCAAGATTTTAAAACGCGTATGCTTGGAAGAGGTTTCCTCACCCTTATAAGGAATGCTTCGTTCCGATGTGGGATCTCACAATCCACGCTCTAGGAGCCTAGTGTCCTCGTTGACATACCGCCCGGTGTCTGGCTTTGATATATTTGCAACAGCTCGAGCTCACAACTAGCAGATATTGTTCTCTTTGGGTTTTCCCTTCTGGGCTTTCCTCAATGTTTTAAAACGCGTCTATAGGGAGAGGTTTCCACACTCTTATAAGAAATGCTTCGTTCCCCGCTCCAACCGATGTGAGATCTCACAATCCACCCCCCTTGGAGGCTTAGTGTCCTCGCTTGCACACCACCTAGTGTCTGGCTATGCACACCGTTCAGTATCTGGCTATGATACCATTTGTTGCCCAAACCCACTGCTAGTAGATACGGTTTTCTTTGAACTTTCCCTTCAGTGCTTCCCCTCAATATTTTAAAATACGTTTGCTAGGGAGAGGTTCCCACACGCTTATAAGAAATGATTAGTTTCCCTCTACAACCGATGTGACATCTCACAATCCCACTCCCTTTGGGGGCCAGCATCCTTGATGGCACACCGCCTAGTGTCTGGTTCTGATACCATTTGTAACAGCTTAAGCCCACCGCTAGCAGATATTGTCCACTTTGGCCTTTCCCTTTTGGGCTTCCGGGCTTCTCCTCAATGCTTTAGAATGTGTATGCTAGGGAGAAGTTTTCACACCCTTATAAGAAATGTTTCGTTCTCTTTTCTAACTGATGTGGGATCTCACACGTGGAATATGACAGTCATATATTAAAAGGTCGATCGAGAGTCAAAATAAACCCTAATATTTTGCTTAAACAAAGTTTTGAGGCTGAAAACGAAGGTTTTGAAGAACAAAAGTAATTCTGATATCTTTTCTTGTGCAGGAATCAAGCAAGGCTACAGAGGAACCTCATGTACCTAGCTGCCATTGCTGATTCTCAACCTCAACCTTCTGCCATGCATGCCCAGGTATGAACATAGTTAGCCGTGTTTTGTTTGGCTGATGATCATTTGGGGAGGTTTTGTCTAACTTTAAGTCGGTTACAAATTTAGCGGCTTGAATCTTGGACTTTAGAATGTAATATGTAATAGCCCGTGCCCACCACTGATAGATTATTGTCCATTTTGGCGCATTATGTATCTCCTCACGGTTTTAGAACGTGTCTGGCTAATGGCTATACGCAATGGGCCAAAATGGACAATATCTGCTAACAGTGGGCTTGGGCTGTTCCAAATGGTGTCAGAGCTAGATACCGGACGGTGTGCCAGTGATTACGCTGGCCCCCAATGGGGTGGTGGATTGTGAGATCCCATTTCGATTGGAGAGGAGAACAAACGAAGCATTCCTTATGAACTTTTTCCTATCAAACGCGTTTTAAAGCCTTGAGGGGATGCTTAGAAGGGAAGCCCAAAGAGGACAATATCTGTTAGCGGTGGGTTTAAGCTGTTCCAAATGGTATTTAGAGCCAGACACAAGGCGGTGTGTCAGCGAGGATGTTGGGCCTCCAATGGGAGTGGATTGTGAGATCCTATATCGTTTGGAGAGAGGAACAAACGAAGCATTCCTAATGAATTTTTCCTGGCAAACGCGTTTTAAAGCTTTGAGGGGAATCTCATGAGGGAAAATTCAAAGAGGACAATATCTACTAGCGGTAGGTTTGAGCTGTTCCAAACAAATGGTATTAGAGCCAGACACAGGGCAATGTGTTAGCGAGAACGTTGGGCCCCTAAGGAGGGTGGATTTGCAAGATCCTACATTGATTATCGAGAGGGGAACGAAACATTAATTCTAAGGGTGTGGAAACCTCTCTCTAGCATACGCGTTTTAAAACTATGAGGCTGGCGATAATACGGAATGGGCCAAAGCGGGCTTGGGCTTTTACGTATATCCAAACATGTCAAAGTAAATTGAATTGAAATGAATCCAACATGTTTTGGTTTTGCCATGTTCTCTCCAGTACTCTTCTAGTGGCCTAATCCAACCAGGAGGACATTACATTCAACACCAACAAGCTCAGCAAATGACACCACAATCACTGATGGCTGCTCGGTCCTCCATGTTGTACACCCAACAGCCATTTTCTAGCCTGCAGCAGCAAGCTTTACACAGCCAACTCGGGATGACCTCCGGAGGCGGCATAGGATTCAACATGCTGCAAAACGATGCCGCCAATGCCGGAGGCAACGGAGGAGCACTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCCCAGATTTCAGCCACAATGCTGCAGCTGATAGCTTGCACCGCAGCCTAGCTGGTGGGAGCAAGCAAGATATGGGAGGAACCGGGTCGGGCGAGGGACGTGGAGGGAGCTCCGGGAGCCATGGCGGAGATGGAGGTGAGAATCTCTACTTGAAATCAGCTGATGATGGGAACTGA

mRNA sequence

ATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTATTATCCCAACAACGTCACTACTGATCATATTCAACAGTATCTGGATGAGAACAAGTCGCTGATATTGAAGATTGTTGAGAGCCAAAACTCGGGAAAATTGAATGAATGTGCAGAGAATCAAGCAAGGCTACAGAGGAACCTCATGTACCTAGCTGCCATTGCTGATTCTCAACCTCAACCTTCTGCCATGCATGCCCAGTACTCTTCTAGTGGCCTAATCCAACCAGGAGGACATTACATTCAACACCAACAAGCTCAGCAAATGACACCACAATCACTGATGGCTGCTCGGTCCTCCATGTTGTACACCCAACAGCCATTTTCTAGCCTGCAGCAGCAAGCTTTACACAGCCAACTCGGGATGACCTCCGGAGGCGGCATAGGATTCAACATGCTGCAAAACGATGCCGCCAATGCCGGAGGCAACGGAGGAGCACTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCCCAGATTTCAGCCACAATGCTGCAGCTGATAGCTTGCACCGCAGCCTAGCTGGTGGGAGCAAGCAAGATATGGGAGGAACCGGGTCGGGCGAGGGACGTGGAGGGAGCTCCGGGAGCCATGGCGGAGATGGAGGTGAGAATCTCTACTTGAAATCAGCTGATGATGGGAACTGA

Coding sequence (CDS)

ATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTATTATCCCAACAACGTCACTACTGATCATATTCAACAGTATCTGGATGAGAACAAGTCGCTGATATTGAAGATTGTTGAGAGCCAAAACTCGGGAAAATTGAATGAATGTGCAGAGAATCAAGCAAGGCTACAGAGGAACCTCATGTACCTAGCTGCCATTGCTGATTCTCAACCTCAACCTTCTGCCATGCATGCCCAGTACTCTTCTAGTGGCCTAATCCAACCAGGAGGACATTACATTCAACACCAACAAGCTCAGCAAATGACACCACAATCACTGATGGCTGCTCGGTCCTCCATGTTGTACACCCAACAGCCATTTTCTAGCCTGCAGCAGCAAGCTTTACACAGCCAACTCGGGATGACCTCCGGAGGCGGCATAGGATTCAACATGCTGCAAAACGATGCCGCCAATGCCGGAGGCAACGGAGGAGCACTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCCCAGATTTCAGCCACAATGCTGCAGCTGATAGCTTGCACCGCAGCCTAGCTGGTGGGAGCAAGCAAGATATGGGAGGAACCGGGTCGGGCGAGGGACGTGGAGGGAGCTCCGGGAGCCATGGCGGAGATGGAGGTGAGAATCTCTACTTGAAATCAGCTGATGATGGGAACTGA

Protein sequence

MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQPFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN

Homology

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BLAST of Carg17432-RA vs. NCBI nr
Match: KAG7021174.1 (GRF1-interacting factor 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 229

[Close]

BLAST of Carg17432-RA vs. NCBI nr
Match: KAG6586325.1 (GRF1-interacting factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 417.5 bits (1072), Expect = 7.2e-113
Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGAL GGGGGGGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGAL-GGGGGGGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 228

[Close]

BLAST of Carg17432-RA vs. NCBI nr
Match: XP_022937932.1 (GRF1-interacting factor 1-like [Cucurbita moschata])

HSP 1 Score: 407.1 bits (1045), Expect = 9.8e-110
Identity = 222/229 (96.94%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGM+SGGGIGFNMLQNDAANAGGNGGAL     GGGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMSSGGGIGFNMLQNDAANAGGNGGAL-----GGGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGETLYLKSADDGN 224

[Close]

BLAST of Carg17432-RA vs. NCBI nr
Match: XP_022965913.1 (GRF1-interacting factor 1-like [Cucurbita maxima])

HSP 1 Score: 405.6 bits (1041), Expect = 2.8e-109
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGM+SGGGIGFNMLQNDAANAGGNGGAL      GGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMSSGGGIGFNMLQNDAANAGGNGGAL------GGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGETLYLKSADDGN 223

[Close]

BLAST of Carg17432-RA vs. NCBI nr
Match: XP_023538061.1 (GRF1-interacting factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.6 bits (1041), Expect = 2.8e-109
Identity = 221/229 (96.51%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGM+SGGGIGFNMLQNDAANAGGNGGAL     GGGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMSSGGGIGFNMLQNDAANAGGNGGAL-----GGGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGG+GSGEGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGSGSGEGRGGSSGSHGGDGGETLYLKSADDGN 224

[Close]

BLAST of Carg17432-RA vs. ExPASy Swiss-Prot
Match: Q8L8A5 (GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.1e-59
Identity = 153/246 (62.20%), Postives = 171/246 (69.51%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMA YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSS--GLIQ--PGGHYIQHQQA---QQMTPQSLMAARS 120
           NLMYLAAIADSQPQP ++H+QY S+  G+IQ   G HY+Q QQA   QQMT QSLMAARS
Sbjct: 61  NLMYLAAIADSQPQPPSVHSQYGSAGGGMIQGEGGSHYLQQQQATQQQQMTQQSLMAARS 120

Query: 121 SMLYT-----QQPFSSLQQQAL-HSQLGMTS----GGGIGFNMLQNDAANAGGNGGALGG 180
           SMLY      QQP+++LQ Q L HSQLGM+S    GG  G ++LQ +A            
Sbjct: 121 SMLYAQQQQQQQPYATLQHQQLHHSQLGMSSSSGGGGSSGLHILQGEA------------ 180

Query: 181 GGGGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLK 230
                 GGF DF              G  K +MG  G GEGRGGSS    GDGGE LYLK
Sbjct: 181 ------GGFHDF--------------GRGKPEMGSGGGGEGRGGSS----GDGGETLYLK 210

[Close]

BLAST of Carg17432-RA vs. ExPASy Swiss-Prot
Match: Q6AVI1 (GRF-interacting factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 123/236 (52.12%), Postives = 149/236 (63.14%), Query Frame = 0


Query: 2   QQHLMQM-QPMMAAY-YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQ 61
           QQHLMQM Q MM  Y  P  VTTD IQQYLDENK LIL I+++QN+GK+ ECA NQA+LQ
Sbjct: 3   QQHLMQMNQGMMGGYASPTTVTTDLIQQYLDENKQLILAILDNQNNGKVEECARNQAKLQ 62

Query: 62  RNLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQ 121
            NLMYLAAIADSQP  +A  +QY S+ ++Q G  Y+  Q AQ M PQSLMAARSSM+Y Q
Sbjct: 63  HNLMYLAAIADSQPPQTAAMSQYPSNLMMQSGARYMPQQSAQMMAPQSLMAARSSMMYAQ 122

Query: 122 QPFSSLQQQ------ALHSQLGMTSGGGI-GFNMLQNDAANAGGNGGALGGGGGGGGGGF 181
              S LQQQ      A H QLGM SGG   GF++L  +A        ++GGGGGGGG G 
Sbjct: 123 PALSPLQQQQQQQAAAAHGQLGMGSGGTTSGFSILHGEA--------SMGGGGGGGGAGN 182

Query: 182 PDFSHNAAADSLHRSLAGGSKQDMGGTG-SGEGRGGSSGSHGGDGGENLYLKSADD 228
              +    +D   R   GG K+  G T  S + RG +SG+  GDG    YLK  ++
Sbjct: 183 SMMNAGVFSD-FGRGGGGGGKE--GSTSLSVDVRGANSGAQSGDGE---YLKGTEE 224

[Close]

BLAST of Carg17432-RA vs. ExPASy Swiss-Prot
Match: A5HEH4 (GRF-interacting factor 1 OS=Zea mays OX=4577 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 118/238 (49.58%), Postives = 143/238 (60.08%), Query Frame = 0


Query: 2   QQHLMQM-QPMMAAY-YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQ 61
           QQHLMQM Q MM  Y  P  VTTD IQQYLDENK LIL I+++QN+GK  EC  +QA+LQ
Sbjct: 3   QQHLMQMNQNMMGGYTSPAAVTTDLIQQYLDENKQLILAILDNQNNGKAEECERHQAKLQ 62

Query: 62  RNLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQ 121
            NLMYLAAIADSQP  +A  +QY S+ ++QPG  Y+  Q  Q M PQSLMAARSSM+Y  
Sbjct: 63  HNLMYLAAIADSQPPQTAPLSQYPSNLMMQPGPRYMPPQSGQMMNPQSLMAARSSMMYAH 122

Query: 122 QPFSSL-QQQALHSQLGMTSGGG-----IGFNMLQNDAANAGGNGGALGGGGGGGGGGFP 181
              S L QQQA H QLGM  GGG      GF++L  +A+  GG  GA  G      G F 
Sbjct: 123 PSLSPLQQQQAAHGQLGMAPGGGGGGTTSGFSILHGEASMGGGGAGAGAGNNMMNAGMFS 182

Query: 182 DFSHNAAADSLHRSLAGGSKQDMGGTG-SGEGRGG-SSGSHGGDGGENLYLKSADDGN 230
            F  +            GS    G T  S + RGG SSG+  GD GE L + + ++G+
Sbjct: 183 GFGRS------------GSGAKEGSTSLSVDVRGGTSSGAQSGD-GEYLKVGTEEEGS 227

[Close]

BLAST of Carg17432-RA vs. ExPASy Swiss-Prot
Match: Q9MAL9 (GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 84/195 (43.08%), Postives = 110/195 (56.41%), Query Frame = 0


Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 61
           QQ   QM PM+ +  P NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQK 62

Query: 62  NLMYLAAIADSQPQP--------SAMHAQYSS--SGLIQPGGHYIQHQQAQQMTPQSLMA 121
           NLMYLAAIAD+QP P        +A+ AQ ++  SG+ QP  +++QH QA   +P  + A
Sbjct: 63  NLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGM-QPPSYFMQHPQA---SPAGIFA 122

Query: 122 AR-----SSMLYTQQPFSSLQQQALHSQ----------LGMTSGGGIGFNMLQNDAANAG 171
            R      S L  Q P    QQQ +H Q          +GMT+ G    + +Q      G
Sbjct: 123 PRGPLQFGSPLQFQDP---QQQQQIHQQAMQGHMGIRPMGMTNNG--MQHAMQQPETGLG 182

[Close]

BLAST of Carg17432-RA vs. ExPASy Swiss-Prot
Match: Q93VH6 (GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-15
Identity = 85/237 (35.86%), Postives = 115/237 (48.52%), Query Frame = 0


Query: 3   QHLMQMQPMMAAYYP--NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 62
           Q   QM PM+   +P  NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 2   QQSPQMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQK 61

Query: 63  NLMYLAAIADSQPQP-------SAMHAQY---SSSGLIQPGGHYIQHQQA---QQMTPQS 122
           NLMYLAAIAD+QPQP        AM  Q    + S +  P  +++Q  QA    Q  P  
Sbjct: 62  NLMYLAAIADAQPQPPAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPG 121

Query: 123 LMAARSSMLYTQ-----QPFSSLQQQALHSQ-----LGMTSGGGIGFNMLQNDAANAGGN 182
           +   R  + +        P   L QQA+        +G+ +  G+   M  ++ A A  N
Sbjct: 122 IFPPRGPLQFGSPHQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHETALAANN 181

Query: 183 GGALGGGGGGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGG 215
            G         GGG PD                G+     G    +G+GGS+  HGG
Sbjct: 182 AGP----NDASGGGKPD----------------GTNMSQSG---ADGQGGSAARHGG 215

[Close]

BLAST of Carg17432-RA vs. ExPASy TrEMBL
Match: A0A6J1FCK8 (GRF1-interacting factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444175 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.7e-110
Identity = 222/229 (96.94%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGM+SGGGIGFNMLQNDAANAGGNGGAL     GGGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMSSGGGIGFNMLQNDAANAGGNGGAL-----GGGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGETLYLKSADDGN 224

[Close]

BLAST of Carg17432-RA vs. ExPASy TrEMBL
Match: A0A6J1HQC1 (GRF1-interacting factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465656 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.4e-109
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFSSLQQQALHSQLGM+SGGGIGFNMLQNDAANAGGNGGAL      GGGGFPDFSHNAA
Sbjct: 121 PFSSLQQQALHSQLGMSSGGGIGFNMLQNDAANAGGNGGAL------GGGGFPDFSHNAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGETLYLKSADDGN 223

[Close]

BLAST of Carg17432-RA vs. ExPASy TrEMBL
Match: A0A0A0LL92 (SSXT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010170 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 210/229 (91.70%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSG+IQPGGHYIQHQQAQQMTPQSLMAARSSMLY+QQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGMIQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFS+LQQQALH QLGM+SGGGIGFNMLQNDAANAGG     G GG  GGGGFPDF H AA
Sbjct: 121 PFSTLQQQALHGQLGMSSGGGIGFNMLQNDAANAGG-----GNGGALGGGGFPDFGHGAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           +DSLHRSLAGGSKQDMGGTGS EGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 SDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGGETLYLKSADDGN 224

[Close]

BLAST of Carg17432-RA vs. ExPASy TrEMBL
Match: A0A1S3C305 (GRF1-interacting factor 1 OS=Cucumis melo OX=3656 GN=LOC103496282 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.7e-102
Identity = 209/229 (91.27%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQPSAMHAQYSSSG+IQPGGHYIQHQQAQQMTPQSLMAARSSMLY+QQ
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQYSSSGMIQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQ 120

Query: 121 PFSSLQQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNAA 180
           PFS+LQQQALH QLGM+SGGGIGFNMLQNDA NAGG     G GG  GGGGFPDF H AA
Sbjct: 121 PFSTLQQQALHGQLGMSSGGGIGFNMLQNDAGNAGG-----GNGGALGGGGFPDFGHGAA 180

Query: 181 ADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
           +DSLHRSLAGGSKQDMGGTGS EGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 SDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGGETLYLKSADDGN 224

[Close]

BLAST of Carg17432-RA vs. ExPASy TrEMBL
Match: A0A6J1KIN1 (GRF1-interacting factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493579 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.9e-98
Identity = 206/230 (89.57%), Postives = 212/230 (92.17%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSSGLIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120
           NLMYLAAIADSQPQP+AMHAQYSSSG+IQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ
Sbjct: 61  NLMYLAAIADSQPQPTAMHAQYSSSGIIQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQ 120

Query: 121 PFSSL-QQQALHSQLGMTSGGGIGFNMLQNDAANAGGNGGALGGGGGGGGGGFPDFSHNA 180
           P+S+L QQQALHSQLGM+SGGGIGFNMLQNDAANAGG  G   GGGGGGGGGFPDF H  
Sbjct: 121 PYSTLQQQQALHSQLGMSSGGGIGFNMLQNDAANAGGGNGGGLGGGGGGGGGFPDFGHGG 180

Query: 181 AADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLKSADDGN 230
                  SL GGSKQ+MGGTGSGEGRGGSSGSHGGDGGE LYLKSADDGN
Sbjct: 181 -------SLGGGSKQEMGGTGSGEGRGGSSGSHGGDGGETLYLKSADDGN 223

[Close]

BLAST of Carg17432-RA vs. TAIR 10
Match: AT5G28640.1 (SSXT family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-60
Identity = 153/246 (62.20%), Postives = 171/246 (69.51%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMA YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQYSSS--GLIQ--PGGHYIQHQQA---QQMTPQSLMAARS 120
           NLMYLAAIADSQPQP ++H+QY S+  G+IQ   G HY+Q QQA   QQMT QSLMAARS
Sbjct: 61  NLMYLAAIADSQPQPPSVHSQYGSAGGGMIQGEGGSHYLQQQQATQQQQMTQQSLMAARS 120

Query: 121 SMLYT-----QQPFSSLQQQAL-HSQLGMTS----GGGIGFNMLQNDAANAGGNGGALGG 180
           SMLY      QQP+++LQ Q L HSQLGM+S    GG  G ++LQ +A            
Sbjct: 121 SMLYAQQQQQQQPYATLQHQQLHHSQLGMSSSSGGGGSSGLHILQGEA------------ 180

Query: 181 GGGGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGGDGGENLYLK 230
                 GGF DF              G  K +MG  G GEGRGGSS    GDGGE LYLK
Sbjct: 181 ------GGFHDF--------------GRGKPEMGSGGGGEGRGGSS----GDGGETLYLK 210

[Close]

BLAST of Carg17432-RA vs. TAIR 10
Match: AT1G01160.1 (GRF1-interacting factor 2 )

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-18
Identity = 84/195 (43.08%), Postives = 110/195 (56.41%), Query Frame = 0


Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 61
           QQ   QM PM+ +  P NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQK 62

Query: 62  NLMYLAAIADSQPQP--------SAMHAQYSS--SGLIQPGGHYIQHQQAQQMTPQSLMA 121
           NLMYLAAIAD+QP P        +A+ AQ ++  SG+ QP  +++QH QA   +P  + A
Sbjct: 63  NLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGM-QPPSYFMQHPQA---SPAGIFA 122

Query: 122 AR-----SSMLYTQQPFSSLQQQALHSQ----------LGMTSGGGIGFNMLQNDAANAG 171
            R      S L  Q P    QQQ +H Q          +GMT+ G    + +Q      G
Sbjct: 123 PRGPLQFGSPLQFQDP---QQQQQIHQQAMQGHMGIRPMGMTNNG--MQHAMQQPETGLG 182

[Close]

BLAST of Carg17432-RA vs. TAIR 10
Match: AT4G00850.1 (GRF1-interacting factor 3 )

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16
Identity = 85/237 (35.86%), Postives = 115/237 (48.52%), Query Frame = 0


Query: 3   QHLMQMQPMMAAYYP--NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 62
           Q   QM PM+   +P  NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 2   QQSPQMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQK 61

Query: 63  NLMYLAAIADSQPQP-------SAMHAQY---SSSGLIQPGGHYIQHQQA---QQMTPQS 122
           NLMYLAAIAD+QPQP        AM  Q    + S +  P  +++Q  QA    Q  P  
Sbjct: 62  NLMYLAAIADAQPQPPAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPG 121

Query: 123 LMAARSSMLYTQ-----QPFSSLQQQALHSQ-----LGMTSGGGIGFNMLQNDAANAGGN 182
           +   R  + +        P   L QQA+        +G+ +  G+   M  ++ A A  N
Sbjct: 122 IFPPRGPLQFGSPHQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHETALAANN 181

Query: 183 GGALGGGGGGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHGG 215
            G         GGG PD                G+     G    +G+GGS+  HGG
Sbjct: 182 AGP----NDASGGGKPD----------------GTNMSQSG---ADGQGGSAARHGG 215

[Close]

BLAST of Carg17432-RA vs. TAIR 10
Match: AT1G01160.2 (GRF1-interacting factor 2 )

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-13
Identity = 84/229 (36.68%), Postives = 110/229 (48.03%), Query Frame = 0


Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQ--------------------------------- 61
           QQ   QM PM+ +  P NN+TT+ IQ+                                 
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKMLGGSGNFESGFQEWTLKLDACLMLLFCTFSWL 62

Query: 62  -YLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQP--------SAM 121
            YLDENK LI+ I+E+QN GKL ECA+ QA LQ+NLMYLAAIAD+QP P        +A+
Sbjct: 63  DYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAV 122

Query: 122 HAQYSS--SGLIQPGGHYIQHQQAQQMTPQSLMAAR-----SSMLYTQQPFSSLQQQALH 171
            AQ ++  SG+ QP  +++QH QA   +P  + A R      S L  Q P    QQQ +H
Sbjct: 123 AAQMATPHSGM-QPPSYFMQHPQA---SPAGIFAPRGPLQFGSPLQFQDP---QQQQQIH 182

The following BLAST results are available for this feature:

BLAST of Carg17432-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021174.1	1.3e-114	100.00	GRF1-interacting factor 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6586325.1	7.2e-113	99.56	GRF1-interacting factor 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022937932.1	9.8e-110	96.94	GRF1-interacting factor 1-like [Cucurbita moschata]	[more]
XP_022965913.1	2.8e-109	96.51	GRF1-interacting factor 1-like [Cucurbita maxima]	[more]
XP_023538061.1	2.8e-109	96.51	GRF1-interacting factor 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17432-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8A5	2.1e-59	62.20	GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1	[more]
Q6AVI1	2.1e-38	52.12	GRF-interacting factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GIF1 PE=1 S...	[more]
A5HEH4	1.3e-32	49.58	GRF-interacting factor 1 OS=Zea mays OX=4577 GN=GIF1 PE=1 SV=1	[more]
Q9MAL9	2.7e-17	43.08	GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1	[more]
Q93VH6	2.5e-15	35.86	GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1	[more]

BLAST of Carg17432-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCK8	4.7e-110	96.94	GRF1-interacting factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444175 PE=...	[more]
A0A6J1HQC1	1.4e-109	96.51	GRF1-interacting factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465656 PE=3 ...	[more]
A0A0A0LL92	1.6e-102	91.70	SSXT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010170 PE=3 S...	[more]
A0A1S3C305	4.7e-102	91.27	GRF1-interacting factor 1 OS=Cucumis melo OX=3656 GN=LOC103496282 PE=3 SV=1	[more]
A0A6J1KIN1	1.9e-98	89.57	GRF1-interacting factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493579 PE=3 ...	[more]

BLAST of Carg17432-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28640.1	1.5e-60	62.20	SSXT family protein	[more]
AT1G01160.1	1.9e-18	43.08	GRF1-interacting factor 2	[more]
AT4G00850.1	1.8e-16	35.86	GRF1-interacting factor 3	[more]
AT1G01160.2	3.1e-13	36.68	GRF1-interacting factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007726	SS18, N-terminal	PFAM	PF05030	SSXT	coord: 19..76 e-value: 1.1E-21 score: 76.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..229
None	No IPR available	PANTHER	PTHR23107:SF18	GRF1-INTERACTING FACTOR 1	coord: 1..229
IPR044779	SS18 family	PANTHER	PTHR23107	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	coord: 1..229

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17432	Carg17432	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17432-RA:1	Carg17432-RA:1	exon
Carg17432-RA:2	Carg17432-RA:2	exon
Carg17432-RA:3	Carg17432-RA:3	exon
Carg17432-RA:4	Carg17432-RA:4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17432-RA:cds	Carg17432-RA:cds_4	CDS
Carg17432-RA:cds	Carg17432-RA:cds_3	CDS
Carg17432-RA:cds	Carg17432-RA:cds_2	CDS
Carg17432-RA:cds	Carg17432-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17432-RA	Carg17432-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0048366	leaf development
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0048316	seed development
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003713	transcription coactivator activity