Carg16034-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16034-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionhomeobox-leucine zipper protein ATHB-40-like
LocationCarg_Chr07: 2236257 .. 2237343 (-)
Sequence length724
RNA-Seq ExpressionCarg16034-RA
SyntenyCarg16034-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTTCACATACACCCACACTTCTAAAGCAATCAAGAGAGAGAAGCTACTGAAGAACTCTACCGCCGGTGATAATGGCCGCCGCCGACGACGACAGTACATTACTGATCTCGAATCTCTACAGCCCTGGAGTTTTTACTCAAATACTCCCCCAACAAGGTCCTTATCTCCATCCTTTATTAGTTTCTTCTTCGTGGTATTGGAGCTTTTTCAAAAATCATGTTTTTTTTTTTTTTTTTTTTTTCAGGTGCGGCGGAGGGAAATAAGCCGACGAAGCGGAGGCGGCGGAGGAGCAAAGCGAAGGAGGCGACCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTACAGAGCAAGTGAAACTTTTAGAGATGAATTTTGGGGATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTCAAAAAAGCTCATGATTCCATTCTTCTCCAAAATTCCCACCTTGAATCTGAGGTAAAAATATATATTTTTTTTCAATTGATTTGAAAGTAGACGAAACGACTCTCCACAATGGTATGATATTGTCCATTTTAGTATAAAGTCTCACGGTTTTGCTTTAGGCTTCTCCAAGATGCCTCGTACCAATGGAGATAGTATTATTTGATTATAAACTCATGAACATTCCCTAAATTAGTAGATGTGGGACTTTCATCATCTAACCCTTCGTATTTTATGTGTTAAATGTTTTCTTTGATTTTAATGTATACCGATTAATGGGTTATTTTTAGATGGCGAAATTGAGCGAGCAATTGAGAGAGGCGAAGAACGAGATCCAACGATTGGTAGAAGGAAGTGAGAAGATTTGGAGCAATAGCCCGACGTCATCGGAGACGATGGATGCCGTGCCACCGCCGGTGCCGTCGTGGGGAGAGCTGTTCTTGGGAGAATATGAAGATGTATTCTATTGCATGCAACAGCAACACGGCAATTACAGTCAAGGAATGGAGTGGCTTAATCTTTATATGTAA

mRNA sequence

CACTTCACATACACCCACACTTCTAAAGCAATCAAGAGAGAGAAGCTACTGAAGAACTCTACCGCCGGTGATAATGGCCGCCGCCGACGACGACAGTACATTACTGATCTCGAATCTCTACAGCCCTGGAGTTTTTACTCAAATACTCCCCCAACAAGGTGCGGCGGAGGGAAATAAGCCGACGAAGCGGAGGCGGCGGAGGAGCAAAGCGAAGGAGGCGACCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTACAGAGCAAGTGAAACTTTTAGAGATGAATTTTGGGGATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTCAAAAAAGCTCATGATTCCATTCTTCTCCAAAATTCCCACCTTGAATCTGAGATGGCGAAATTGAGCGAGCAATTGAGAGAGGCGAAGAACGAGATCCAACGATTGGTAGAAGGAAGTGAGAAGATTTGGAGCAATAGCCCGACGTCATCGGAGACGATGGATGCCGTGCCACCGCCGGTGCCGTCGTGGGGAGAGCTGTTCTTGGGAGAATATGAAGATGTATTCTATTGCATGCAACAGCAACACGGCAATTACAGTCAAGGAATGGAGTGGCTTAATCTTTATATGTAA

Coding sequence (CDS)

ATGGCCGCCGCCGACGACGACAGTACATTACTGATCTCGAATCTCTACAGCCCTGGAGTTTTTACTCAAATACTCCCCCAACAAGGTGCGGCGGAGGGAAATAAGCCGACGAAGCGGAGGCGGCGGAGGAGCAAAGCGAAGGAGGCGACCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTACAGAGCAAGTGAAACTTTTAGAGATGAATTTTGGGGATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTCAAAAAAGCTCATGATTCCATTCTTCTCCAAAATTCCCACCTTGAATCTGAGATGGCGAAATTGAGCGAGCAATTGAGAGAGGCGAAGAACGAGATCCAACGATTGGTAGAAGGAAGTGAGAAGATTTGGAGCAATAGCCCGACGTCATCGGAGACGATGGATGCCGTGCCACCGCCGGTGCCGTCGTGGGGAGAGCTGTTCTTGGGAGAATATGAAGATGTATTCTATTGCATGCAACAGCAACACGGCAATTACAGTCAAGGAATGGAGTGGCTTAATCTTTATATGTAA

Protein sequence

MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPVPSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Homology
[Close]
BLAST of Carg16034-RA vs. NCBI nr
Match: KAG7026804.1 (Homeobox-leucine zipper protein ATHB-21 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 422.5 bits (1085), Expect = 2.1e-114
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL
Sbjct: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV
Sbjct: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180

Query: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Sbjct: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216

[Close]
BLAST of Carg16034-RA vs. NCBI nr
Match: XP_023518445.1 (homeobox-leucine zipper protein ATHB-40-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 209/216 (96.76%), Postives = 212/216 (98.15%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MAAADDD+TLLISNLYSPGV+TQILPQQGAAEGNKPTKRRRRRSKAKEA GAAGLKKRKL
Sbjct: 1   MAAADDDNTLLISNLYSPGVYTQILPQQGAAEGNKPTKRRRRRSKAKEAAGAAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSI+LQNSHLE EM KLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPP 
Sbjct: 121 KKAHDSIILQNSHLEYEMTKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPA 180

Query: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Sbjct: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216

[Close]
BLAST of Carg16034-RA vs. NCBI nr
Match: XP_022963111.1 (homeobox-leucine zipper protein ATHB-40-like [Cucurbita moschata])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 210/216 (97.22%), Postives = 214/216 (99.07%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MAAADDD+TLL+SNLYSPGVFTQIL QQGAAEGNKPTKRRRRRSKAKEA GAAGLKKRKL
Sbjct: 1   MAAADDDNTLLMSNLYSPGVFTQILTQQGAAEGNKPTKRRRRRSKAKEAAGAAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWS+SPTSSETMDA+PPPV
Sbjct: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSSSPTSSETMDAMPPPV 180

Query: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Sbjct: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216

[Close]
BLAST of Carg16034-RA vs. NCBI nr
Match: XP_023003086.1 (homeobox-leucine zipper protein ATHB-40-like [Cucurbita maxima])

HSP 1 Score: 395.6 bits (1015), Expect = 2.8e-106
Identity = 202/216 (93.52%), Postives = 205/216 (94.91%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MA A DD+TLLISNLYSPGV+TQIL QQG AEGNKP KRRRRRSKAKEA G AGLKKRKL
Sbjct: 1   MATAADDNTLLISNLYSPGVYTQILSQQGVAEGNKPMKRRRRRSKAKEAAGVAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSILLQNSHLESEM KL+EQLREAKNEIQRLVEGSEKIWSNSPTSSETMD VPP  
Sbjct: 121 KKAHDSILLQNSHLESEMVKLNEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDTVPPLA 180

Query: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Sbjct: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216

[Close]
BLAST of Carg16034-RA vs. NCBI nr
Match: KAG6594841.1 (Serine/threonine/tyrosine-protein kinase HT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.0 bits (933), Expect = 8.9e-97
Identity = 189/193 (97.93%), Postives = 191/193 (98.96%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MAAA DD+TLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEA GAAGLKKRKL
Sbjct: 1   MAAAADDNTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEAAGAAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSILLQNSHLESEMAKLSEQLREAKN+IQRLVEGSEKIWSNSPTSSETMDAVPPPV
Sbjct: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNKIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180

Query: 181 PSWGELFLGEYED 194
           PSWGELFLGEYED
Sbjct: 181 PSWGELFLGEYED 193

[Close]
BLAST of Carg16034-RA vs. ExPASy Swiss-Prot
Match: O23208 (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana OX=3702 GN=ATHB-40 PE=2 SV=3)

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-45
Identity = 112/219 (51.14%), Postives = 149/219 (68.04%), Query Frame = 0 

Query: 5   DDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAG---LKKRKLS 64
           DD +   IS LY P V+TQI+ Q G     K  KRRR+++K   A+   G    +KRKL+
Sbjct: 6   DDQNMAFISQLY-PDVYTQIV-QPGEV---KQPKRRRKKTKGSVASADGGNGLFRKRKLT 65

Query: 65  TEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLK 124
            EQV +LEM+FGDEHKLESERKDRLA+ELGLDPRQVAVWFQNRRARWKNK+LEEEY+ LK
Sbjct: 66  DEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLK 125

Query: 125 KAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPVP 184
            +HD++++    LESE+ +L EQL +A+ EIQRL E  E   SNSP SS ++       P
Sbjct: 126 NSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSSNSPISS-SVSVEANETP 185

Query: 185 SWGELFLG----EYEDVFYCMQQQHGNYSQGMEWLNLYM 217
            +G+  +G    +Y+ +FY + +   +Y    EW++LY+
Sbjct: 186 FFGDYKVGDDGDDYDHLFYPVPE--NSYIDEAEWMSLYI 216

[Close]
BLAST of Carg16034-RA vs. ExPASy Swiss-Prot
Match: Q9ZU70 (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana OX=3702 GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.3e-45
Identity = 109/222 (49.10%), Postives = 148/222 (66.67%), Query Frame = 0 

Query: 5   DDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKA------KEATGAAGLKKR 64
           DD + LLIS LY P V+T ++PQQG     KPT+RR+R+SK+       E  G    +KR
Sbjct: 7   DDHNLLLISQLY-PNVYTPLVPQQGGEA--KPTRRRKRKSKSVVVAEEGENEGNGWFRKR 66

Query: 65  KLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS 124
           KLS EQV++LE++F D+HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK++E+EY+
Sbjct: 67  KLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYT 126

Query: 125 TLKKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPP 184
            LK A+++ +++   L+SE+  L EQL EA+ EIQRL +  E   SNSP SS        
Sbjct: 127 KLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKRVEGTLSNSPISSSVTIEANH 186

Query: 185 PVPSWGELFLG----EYEDVFYCMQQQHGNYSQGMEWLNLYM 217
             P +G+  +G      E++ Y       +Y  G++W++ +M
Sbjct: 187 TTPFFGDYDIGFDGEADENLLY-----SPDYIDGLDWMSQFM 220

[Close]
BLAST of Carg16034-RA vs. ExPASy Swiss-Prot
Match: Q9LVR0 (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana OX=3702 GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-38
Identity = 108/225 (48.00%), Postives = 141/225 (62.67%), Query Frame = 0 

Query: 6   DDSTLLISNLYSPGVFTQ-----ILPQQGAAEGNKPTKRRR-RRSKAKEATG-------A 65
           DD  +L S +Y      Q     I+ Q    E +KP KRRR RRSK   AT         
Sbjct: 8   DDQMMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIG 67

Query: 66  AGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKK 125
             L+KRKL+ EQV +LE +FG+EHKLES RK+++A ELGLDPRQVAVWFQNRRARWKNKK
Sbjct: 68  GMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKK 127

Query: 126 LEEEYSTLKKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSET 185
           LEEEY+ LK  HD+++L    LES++ KL+EQL EA++EI++L E  E++ +NS +SS +
Sbjct: 128 LEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSSSLS 187

Query: 186 MDAVPPPVPSWGELFLGEYEDVFYCMQQQHGNYSQGME-WLNLYM 217
           ++A   P   +       Y   FY +     NY Q ME W  LY+
Sbjct: 188 VEANNAPT-DFELAPETNYNIPFYMLD---NNYLQSMEYWDGLYV 228

[Close]
BLAST of Carg16034-RA vs. ExPASy Swiss-Prot
Match: Q7XI85 (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX14 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 94/229 (41.05%), Postives = 133/229 (58.08%), Query Frame = 0 

Query: 15  LYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAG--------LKKRKLSTEQVK 74
           +++  V   +L   G  +G +P  RRRRR  A+   G  G         KKR+LS EQV+
Sbjct: 13  MFASYVDASLLAASGEVQGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVE 72

Query: 75  LLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDS 134
           +LE++F +E KLE+ RK  LASELGLDP+QVAVWFQNRRAR K+K LEEE+S LK AHD+
Sbjct: 73  MLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDA 132

Query: 135 ILLQNSHLESEMAKLSEQLREAKNEIQRL------------------VEGSEKIWSNSPT 194
            +L   HLE+E+ +L E+L  A+ E++RL                  + GS    + SP+
Sbjct: 133 AILHKCHLENEVLRLKERLVVAEEEVRRLRSAAGSHTASGEGGDIMGLGGSGACVAGSPS 192

Query: 195 SSETMDAVPPPVPSWGELFLGEYEDVFYCMQQQHGNYSQG--MEWLNLY 216
           SS +     PP    G+  LG+ +D+ Y    ++G Y+    +EW +LY
Sbjct: 193 SSFSTGTCQPPSFGGGD-HLGD-DDLVYV--PEYGGYADNSVVEWFSLY 237

[Close]
BLAST of Carg16034-RA vs. ExPASy Swiss-Prot
Match: A2YN17 (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica OX=39946 GN=HOX14 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-30
Identity = 94/232 (40.52%), Postives = 132/232 (56.90%), Query Frame = 0 

Query: 15  LYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAG--------LKKRKLSTEQVK 74
           +++  V   +L   G  +G +P  RRRRR  A+   G  G         KKR+LS EQV+
Sbjct: 13  MFASYVDASLLAASGEVQGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVE 72

Query: 75  LLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDS 134
           +LE++F +E KLE+ RK  LASELGLDP+QVAVWFQNRRAR K+K LEEE+S LK AHD+
Sbjct: 73  MLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDA 132

Query: 135 ILLQNSHLESEMAKLSEQLREAKNEIQRL------------------VEGSEKIWSNSPT 194
            +L   HLE+E+ +L E+L  A+ E++RL                  + GS    + SP+
Sbjct: 133 AILHKCHLENEVLRLKERLVVAEEEVRRLRSAAGSHTASGEGGDIMGLGGSGACVAGSPS 192

Query: 195 SSETMDAVPPPV---PSWGELFLGEYEDVFYCMQQQHGNYSQG--MEWLNLY 216
           SS +     PP       G   LG+ +D+ Y    ++G Y+    +EW +LY
Sbjct: 193 SSFSTGTCQPPSFGGGGGGGDHLGD-DDLVYV--PEYGGYADNSVVEWFSLY 241

[Close]
BLAST of Carg16034-RA vs. ExPASy TrEMBL
Match: A0A6J1HF68 (homeobox-leucine zipper protein ATHB-40-like OS=Cucurbita moschata OX=3662 GN=LOC111463411 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.4e-111
Identity = 210/216 (97.22%), Postives = 214/216 (99.07%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MAAADDD+TLL+SNLYSPGVFTQIL QQGAAEGNKPTKRRRRRSKAKEA GAAGLKKRKL
Sbjct: 1   MAAADDDNTLLMSNLYSPGVFTQILTQQGAAEGNKPTKRRRRRSKAKEAAGAAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWS+SPTSSETMDA+PPPV
Sbjct: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSSSPTSSETMDAMPPPV 180

Query: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Sbjct: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216

[Close]
BLAST of Carg16034-RA vs. ExPASy TrEMBL
Match: A0A6J1KN43 (homeobox-leucine zipper protein ATHB-40-like OS=Cucurbita maxima OX=3661 GN=LOC111496798 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 202/216 (93.52%), Postives = 205/216 (94.91%), Query Frame = 0 

Query: 1   MAAADDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKL 60
           MA A DD+TLLISNLYSPGV+TQIL QQG AEGNKP KRRRRRSKAKEA G AGLKKRKL
Sbjct: 1   MATAADDNTLLISNLYSPGVYTQILSQQGVAEGNKPMKRRRRRSKAKEAAGVAGLKKRKL 60

Query: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120
           STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL
Sbjct: 61  STEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTL 120

Query: 121 KKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPV 180
           KKAHDSILLQNSHLESEM KL+EQLREAKNEIQRLVEGSEKIWSNSPTSSETMD VPP  
Sbjct: 121 KKAHDSILLQNSHLESEMVKLNEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDTVPPLA 180

Query: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM
Sbjct: 181 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216

[Close]
BLAST of Carg16034-RA vs. ExPASy TrEMBL
Match: A0A0A0KGE8 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501990 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.5e-76
Identity = 162/215 (75.35%), Postives = 184/215 (85.58%), Query Frame = 0 

Query: 5   DDDSTLLISNLYSPGVFT-QILPQQGAAEGNKPTKRRRRRSKAKEATGAAGLKKRKLSTE 64
           D D++LL+S+LY+P V+T Q+LPQQG  EG+KPTKRRRRRSKAKE  GAAGLKKRKLS+E
Sbjct: 9   DADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSE 68

Query: 65  QVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKA 124
           QVKLLEMNFG+EHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKA
Sbjct: 69  QVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKA 128

Query: 125 HDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSE--KIWSNSPTSSETMDAV-PPPV 184
           HDS++LQ SHLESE+ K+ EQL+EAKNEI+++VEGSE     SNSP+SS TM+AV    V
Sbjct: 129 HDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAV 188

Query: 185 PSWGELFLGEYEDVFYCMQQQHGNYSQGMEW-LNL 215
              GELF  EYEDVFYCMQ    NY+QG+ W LNL
Sbjct: 189 VPLGELFFEEYEDVFYCMQD--NNYNQGLNWALNL 221

[Close]
BLAST of Carg16034-RA vs. ExPASy TrEMBL
Match: A0A1S3B2Q4 (homeobox-leucine zipper protein ATHB-40 OS=Cucumis melo OX=3656 GN=LOC103485348 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.7e-75
Identity = 161/212 (75.94%), Postives = 181/212 (85.38%), Query Frame = 0 

Query: 8   STLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAG-LKKRKLSTEQVK 67
           ++LL S+LY+P V+TQ+LPQQG  EGNKPTKRRRRRSKAKE  G AG LKKRKLS+EQVK
Sbjct: 13  NSLLSSHLYNPEVYTQVLPQQGTGEGNKPTKRRRRRSKAKEGGGGAGSLKKRKLSSEQVK 72

Query: 68  LLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDS 127
           LLEMNFG+EHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDS
Sbjct: 73  LLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDS 132

Query: 128 ILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSE--KIWSNSPTSSETMDAV-PPPVPSW 187
           +LLQ SHLESE+ K+ EQL+EAKNEI+++VEGSE     SNSP+SS TM+AV    V   
Sbjct: 133 VLLQKSHLESELVKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVPL 192

Query: 188 GELFLGEYEDVFYCMQQQHGNYSQGMEW-LNL 215
           GELF  EYEDVFYCMQ    NY+QG++W LNL
Sbjct: 193 GELFFEEYEDVFYCMQD--NNYNQGLDWALNL 222

[Close]
BLAST of Carg16034-RA vs. ExPASy TrEMBL
Match: A0A6J1GFW2 (homeobox-leucine zipper protein ATHB-40-like OS=Cucurbita moschata OX=3662 GN=LOC111453582 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.6e-67
Identity = 145/213 (68.08%), Postives = 173/213 (81.22%), Query Frame = 0 

Query: 5   DDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKE-ATGAAGLKKRKLSTE 64
           DDD++ LIS+LY+P ++TQ+LPQQG AEGNKPTKRRRRRS+AKE A  AAGLKKRKLS+E
Sbjct: 9   DDDNSTLISHLYNPEIYTQMLPQQGTAEGNKPTKRRRRRSRAKEVAEAAAGLKKRKLSSE 68

Query: 65  QVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKA 124
           QVKLLEMNFG+EHKLE+ERK+RLASELGLDP QVA+WFQNRRARWKN+KLE +YS LKKA
Sbjct: 69  QVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSMLKKA 128

Query: 125 HDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPVPSW 184
           HDS +LQ +HL+SE+ KL EQL EAKNEIQ+LVE SE+    +   S TMD V      W
Sbjct: 129 HDSAVLQKTHLQSEIEKLKEQLAEAKNEIQKLVEVSER----NRRWSVTMDDV-QAAACW 188

Query: 185 GELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 217
           GE+ + EYEDVFY MQ+   NY++ +EW   YM
Sbjct: 189 GEILMEEYEDVFYSMQE--NNYNEPVEWYLNYM 214

[Close]
BLAST of Carg16034-RA vs. TAIR 10
Match: AT4G36740.1 (homeobox protein 40 )

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-46
Identity = 112/219 (51.14%), Postives = 149/219 (68.04%), Query Frame = 0 

Query: 5   DDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKAKEATGAAG---LKKRKLS 64
           DD +   IS LY P V+TQI+ Q G     K  KRRR+++K   A+   G    +KRKL+
Sbjct: 6   DDQNMAFISQLY-PDVYTQIV-QPGEV---KQPKRRRKKTKGSVASADGGNGLFRKRKLT 65

Query: 65  TEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLK 124
            EQV +LEM+FGDEHKLESERKDRLA+ELGLDPRQVAVWFQNRRARWKNK+LEEEY+ LK
Sbjct: 66  DEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLK 125

Query: 125 KAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPPPVP 184
            +HD++++    LESE+ +L EQL +A+ EIQRL E  E   SNSP SS ++       P
Sbjct: 126 NSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSSNSPISS-SVSVEANETP 185

Query: 185 SWGELFLG----EYEDVFYCMQQQHGNYSQGMEWLNLYM 217
            +G+  +G    +Y+ +FY + +   +Y    EW++LY+
Sbjct: 186 FFGDYKVGDDGDDYDHLFYPVPE--NSYIDEAEWMSLYI 216

[Close]
BLAST of Carg16034-RA vs. TAIR 10
Match: AT2G18550.1 (homeobox protein 21 )

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-46
Identity = 109/222 (49.10%), Postives = 148/222 (66.67%), Query Frame = 0 

Query: 5   DDDSTLLISNLYSPGVFTQILPQQGAAEGNKPTKRRRRRSKA------KEATGAAGLKKR 64
           DD + LLIS LY P V+T ++PQQG     KPT+RR+R+SK+       E  G    +KR
Sbjct: 7   DDHNLLLISQLY-PNVYTPLVPQQGGEA--KPTRRRKRKSKSVVVAEEGENEGNGWFRKR 66

Query: 65  KLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS 124
           KLS EQV++LE++F D+HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK++E+EY+
Sbjct: 67  KLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYT 126

Query: 125 TLKKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDAVPP 184
            LK A+++ +++   L+SE+  L EQL EA+ EIQRL +  E   SNSP SS        
Sbjct: 127 KLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKRVEGTLSNSPISSSVTIEANH 186

Query: 185 PVPSWGELFLG----EYEDVFYCMQQQHGNYSQGMEWLNLYM 217
             P +G+  +G      E++ Y       +Y  G++W++ +M
Sbjct: 187 TTPFFGDYDIGFDGEADENLLY-----SPDYIDGLDWMSQFM 220

[Close]
BLAST of Carg16034-RA vs. TAIR 10
Match: AT5G66700.1 (homeobox 53 )

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-39
Identity = 108/225 (48.00%), Postives = 141/225 (62.67%), Query Frame = 0 

Query: 6   DDSTLLISNLYSPGVFTQ-----ILPQQGAAEGNKPTKRRR-RRSKAKEATG-------A 65
           DD  +L S +Y      Q     I+ Q    E +KP KRRR RRSK   AT         
Sbjct: 8   DDQMMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIG 67

Query: 66  AGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKK 125
             L+KRKL+ EQV +LE +FG+EHKLES RK+++A ELGLDPRQVAVWFQNRRARWKNKK
Sbjct: 68  GMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKK 127

Query: 126 LEEEYSTLKKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSNSPTSSET 185
           LEEEY+ LK  HD+++L    LES++ KL+EQL EA++EI++L E  E++ +NS +SS +
Sbjct: 128 LEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSSSLS 187

Query: 186 MDAVPPPVPSWGELFLGEYEDVFYCMQQQHGNYSQGME-WLNLYM 217
           ++A   P   +       Y   FY +     NY Q ME W  LY+
Sbjct: 188 VEANNAPT-DFELAPETNYNIPFYMLD---NNYLQSMEYWDGLYV 228

[Close]
BLAST of Carg16034-RA vs. TAIR 10
Match: AT3G01470.1 (homeobox 1 )

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 56  KKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 115
           KKR+L+TEQV LLE +F  E+KLE ERK +LA +LGL PRQVAVWFQNRRARWK K+LE 
Sbjct: 68  KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127

Query: 116 EYSTLKKA-------HDSILLQNSHLESEMAKLSEQL---REAKNE 152
           +Y  LK         +DSI++ N  L SE+  L+E+L   +E  NE
Sbjct: 128 DYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANE 173

[Close]
BLAST of Carg16034-RA vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 )

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-21
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 49  ATGAAGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARW 108
           A+  A  KKR+L  EQVK LE NF  ++KLE ERK +LA ELGL PRQVA+WFQNRRARW
Sbjct: 65  ASSTAAEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARW 124

Query: 109 KNKKLEEEYSTLKKAHDSILLQNSHLESEMAKLSEQLREAKNEIQRLVEGSEKIWSN 166
           K K+LE +Y  LK   D++      L+ +   L  Q++E K ++   VEG + I  N
Sbjct: 125 KTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLN--VEGVKGIEEN 179

The following BLAST results are available for this feature:
BLAST of Carg16034-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026804.12.1e-114100.00Homeobox-leucine zipper protein ATHB-21 [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_023518445.12.9e-11196.76homeobox-leucine zipper protein ATHB-40-like [Cucurbita pepo subsp. pepo][more]
XP_022963111.12.9e-11197.22homeobox-leucine zipper protein ATHB-40-like [Cucurbita moschata][more]
XP_023003086.12.8e-10693.52homeobox-leucine zipper protein ATHB-40-like [Cucurbita maxima][more]
KAG6594841.18.9e-9797.93Serine/threonine/tyrosine-protein kinase HT1, partial [Cucurbita argyrosperma su... [more]
BLAST of Carg16034-RA vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O232083.7e-4551.14Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q9ZU706.3e-4549.10Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q9LVR02.6e-3848.00Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q7XI854.0e-3141.05Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
A2YN173.4e-3040.52Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
BLAST of Carg16034-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HF681.4e-11197.22homeobox-leucine zipper protein ATHB-40-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1KN431.3e-10693.52homeobox-leucine zipper protein ATHB-40-like OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A0A0KGE85.5e-7675.35Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501990 PE... [more]
A0A1S3B2Q44.7e-7575.94homeobox-leucine zipper protein ATHB-40 OS=Cucumis melo OX=3656 GN=LOC103485348 ... [more]
A0A6J1GFW23.6e-6768.08homeobox-leucine zipper protein ATHB-40-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
BLAST of Carg16034-RA vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G36740.12.6e-4651.14homeobox protein 40 [more]
AT2G18550.14.5e-4649.10homeobox protein 21 [more]
AT5G66700.11.8e-3948.00homeobox 53 [more]
AT3G01470.14.5e-2255.66homeobox 1 [more]
AT5G65310.11.7e-2149.57homeobox protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..158
NoneNo IPR availableGENE3D1.10.10.60coord: 51..119
e-value: 8.1E-20
score: 72.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..56
NoneNo IPR availablePANTHERPTHR24326HOMEOBOX-LEUCINE ZIPPER PROTEINcoord: 6..215
NoneNo IPR availablePANTHERPTHR24326:SF577HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKEcoord: 6..215
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 82..91
score: 46.12
coord: 91..107
score: 58.71
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 54..115
e-value: 3.1E-18
score: 76.6
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 57..110
e-value: 1.3E-16
score: 60.2
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 51..111
score: 16.568216
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 56..112
e-value: 4.2133E-16
score: 67.6536
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 86..109
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 56..120

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg16034Carg16034gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16034-RA:3Carg16034-RA:3exon
Carg16034-RA:2Carg16034-RA:2exon
Carg16034-RA:1Carg16034-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16034-RA:cdsCarg16034-RA:cds_3CDS
Carg16034-RA:cdsCarg16034-RA:cds_2CDS
Carg16034-RA:cdsCarg16034-RA:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16034-RA:five_prime_utrCarg16034-RA:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg16034-RACarg16034-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0043565 sequence-specific DNA binding