Carg15388-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15388-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 9542988 .. 9545039 (+)
Sequence length276
RNA-Seq ExpressionCarg15388-RA
SyntenyCarg15388-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCAACTTCCACCGCCTGTGGTTGTTGGGGTTGTGGGCGTTATGGTTGGGGTTGTAGGCGTTATGGTCGGTCCGGTAGGGATTGTTTGTGCTGGCGGTGATGTTGGATCCACAATCGGGGTCTGGGTTGGAGTTGTGCCGCCCACTGGGGTGGTTGGATTCACAATGGGGATTGTGTCCAGTTGAGTGTTGGATATTGAAGTTGAAAAGTAGGGTATTTGTTCTTCTTGATTTTGCAGTTCATAGTCTTCTTGGTTTGCTTCAAAATATGGAGTCCGTGCAATACTTGAACCTGAAGCCACAAAAAGCAAGGTCAGTTTCTTCTTGTGAAAAAGTGAAACCTCTTCACATTATGATTATCTTAGAACAACCAATATGAGAAATGCAGAAAGATAAGGCATTGATATCATTGTGCAGGAAAAAAAAAAGGGGCATTGAACGCTGATTTACCTAAACTGAGGAAGATCAACAATGAAAGCAATGCAGTATGGAGGCGAACGCAGGTACCCATCTCTACAAATTACTTCCAATGCTTGGTTTTGGATGTTCAAAGGTTTTTGAACAATGACAGGACCAGAGATTTGATATGAAATGGGTTTCTGTAAAGAAGAATGAGCCTTTTTGGCGGCAAGCAATATATACAGCAAGGTGGGGCGACAGAATCTAAGCTTTCTTGGATCATCAAGAGTGAGAAAGAAGGGGAGGAGAATATGAGGAAACTTGAGAGAGGAGGCATTGTATATTTGAATAGTTGGGAAGCGCAAGCAAGGGAAGGTTTAGAAAACGAAAAAAGGTATATGGAGAAGGAAAGGCCTGCTGTGAACTCTATACTGATTCTGCAGTTTCGTGTGGTGCCATTTCCCTTCTTCTCTTTAGAGCTTCAGCTTTATGTTACTGAATCAGAAAGTTAAAGGTGGGGTTGGGTTATGGGTTATGGGTTATGGGTTATGGCCTATGGGCGATAGATTTGTGTGCACAAGTTGCATCTTGTAGTTTGTGATCAAGAATATTGTCCCCTGGAGAATCTGCTTAGGTACCAAAACAAGAATCAAATCCTTCTCTCGCTGCCTCCATTTTCTGTTGTGGCATTTGATTCCTTCTTTTAGAAACAAGCCCACTTATCCACTCAACTGCCAGATACTACTCATCCAATATTCTAACACAACATAACTGACATCTCTCCGCACACTTTCTGAGTGGTTCGTATGATCCTACTGCCGCAAACCACACACCCAGCTCTTAGCCCCCAAACTACTTCCCATATTTGGGGCCTTTCCTTACAGTTTTGGTTGATTTTTTTCTTGGTATGATATCTCTGCTTTGGTTATTGCTGTTGAGTTCAACGATGGTAGAATGAGAGATTGAATTATTGGTGTTTTAAAATCATTTGTGAAATTGAATGACAGAATGTTGAAAGGTTAAGACTATATGTTTCAGAAAAGCTAATGAAATTGTATCAACAACCTAACGTGACAAACTGCAAACCAGCTGTGATGGAATAAACCAACAAAGATGGTTCCTCCCAACCAAATTGGTAGGTTATGTGAGGTTCTACACCAGTTTTAGAGGGACGAAGCATTTCTTATAAGCCCCTTCCTATTATTTCTTATAAAGGTCTTATCAAATACATTTAAAAGTCGTGAGGCTAAGGCGATAGGCAATAGGTTAAAGACGACAATATCCATTAGCAGTAGGTGTCTGAACTGTTGCAAATTACAGAGTTAGACACGGGGCGGTATAACAGTGAGAAGAGTGGATTGTGAGATTCCATTTCAACCGGAGAGAAAAGGAACATTCCAATATTCTTTATAAATTGCTATATTAAACCAGAGGATGATAACAGCCAACATGGACAATGTTACTATTTTAAGTTACTTTCCATATTCCTAGGTTATTTTCCAGATTCCTATTTTAAAAAATTGAATAAACTGATTTAGTTTTTCCAATTTTGACTTTTGCGAATCCCAATGGATTATCTCTTCATGGGGACTTTGAATTTCATAATATATAATTTTTTTTTTTAATTTCAGTTTTCAAATAATTATTTAA

mRNA sequence

ATGCACCAACTTCCACCGCCTGTGGTTGTTGGGGTTGTGGGCGTTATGGTTGGGGTTGTAGGCGTTATGGTCGGTCCGGTAGGGATTGTTTGTGCTGGCGGTGATGTTGGATCCACAATCGGGGTCTGGGTTGGAGTTGTGCCGCCCACTGGGGTGGTTGGATTCACAATGGGGATTGTGTCCATTCATAGTCTTCTTGGTTTGCTTCAAAATATGGAGTCCGTGCAATACTTGAACCTGAAGCCACAAAAAGCAAGTTTTCAAATAATTATTTAA

Coding sequence (CDS)

ATGCACCAACTTCCACCGCCTGTGGTTGTTGGGGTTGTGGGCGTTATGGTTGGGGTTGTAGGCGTTATGGTCGGTCCGGTAGGGATTGTTTGTGCTGGCGGTGATGTTGGATCCACAATCGGGGTCTGGGTTGGAGTTGTGCCGCCCACTGGGGTGGTTGGATTCACAATGGGGATTGTGTCCATTCATAGTCTTCTTGGTTTGCTTCAAAATATGGAGTCCGTGCAATACTTGAACCTGAAGCCACAAAAAGCAAGTTTTCAAATAATTATTTAA

Protein sequence

MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIVSIHSLLGLLQNMESVQYLNLKPQKASFQIII
Homology
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BLAST of Carg15388-RA vs. NCBI nr
Match: KAG7034688.1 (hypothetical protein SDJN02_04418, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIV 60
          MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIV
Sbjct: 1  MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIV 60

Query: 61 SIHSLLGLLQNMESVQYLNLKPQKASFQIII 92
          SIHSLLGLLQNMESVQYLNLKPQKASFQIII
Sbjct: 61 SIHSLLGLLQNMESVQYLNLKPQKASFQIII 91

The following BLAST results are available for this feature:
BLAST of Carg15388-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034688.11.8e-38100.00hypothetical protein SDJN02_04418, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15388-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15388-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15388-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15388Carg15388gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15388-RA:1Carg15388-RA:1exon
Carg15388-RA:2Carg15388-RA:2exon
Carg15388-RA:3Carg15388-RA:3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15388-RA:cdsCarg15388-RA:cdsCDS
Carg15388-RA:cdsCarg15388-RA:cds_2CDS
Carg15388-RA:cdsCarg15388-RA:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15388-RACarg15388-RA-proteinpolypeptide