Carg15388 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15388
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 9542988 .. 9545039 (+)
RNA-Seq ExpressionCarg15388
SyntenyCarg15388
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCAACTTCCACCGCCTGTGGTTGTTGGGGTTGTGGGCGTTATGGTTGGGGTTGTAGGCGTTATGGTCGGTCCGGTAGGGATTGTTTGTGCTGGCGGTGATGTTGGATCCACAATCGGGGTCTGGGTTGGAGTTGTGCCGCCCACTGGGGTGGTTGGATTCACAATGGGGATTGTGTCCAGTTGAGTGTTGGATATTGAAGTTGAAAAGTAGGGTATTTGTTCTTCTTGATTTTGCAGTTCATAGTCTTCTTGGTTTGCTTCAAAATATGGAGTCCGTGCAATACTTGAACCTGAAGCCACAAAAAGCAAGGTCAGTTTCTTCTTGTGAAAAAGTGAAACCTCTTCACATTATGATTATCTTAGAACAACCAATATGAGAAATGCAGAAAGATAAGGCATTGATATCATTGTGCAGGAAAAAAAAAAGGGGCATTGAACGCTGATTTACCTAAACTGAGGAAGATCAACAATGAAAGCAATGCAGTATGGAGGCGAACGCAGGTACCCATCTCTACAAATTACTTCCAATGCTTGGTTTTGGATGTTCAAAGGTTTTTGAACAATGACAGGACCAGAGATTTGATATGAAATGGGTTTCTGTAAAGAAGAATGAGCCTTTTTGGCGGCAAGCAATATATACAGCAAGGTGGGGCGACAGAATCTAAGCTTTCTTGGATCATCAAGAGTGAGAAAGAAGGGGAGGAGAATATGAGGAAACTTGAGAGAGGAGGCATTGTATATTTGAATAGTTGGGAAGCGCAAGCAAGGGAAGGTTTAGAAAACGAAAAAAGGTATATGGAGAAGGAAAGGCCTGCTGTGAACTCTATACTGATTCTGCAGTTTCGTGTGGTGCCATTTCCCTTCTTCTCTTTAGAGCTTCAGCTTTATGTTACTGAATCAGAAAGTTAAAGGTGGGGTTGGGTTATGGGTTATGGGTTATGGGTTATGGCCTATGGGCGATAGATTTGTGTGCACAAGTTGCATCTTGTAGTTTGTGATCAAGAATATTGTCCCCTGGAGAATCTGCTTAGGTACCAAAACAAGAATCAAATCCTTCTCTCGCTGCCTCCATTTTCTGTTGTGGCATTTGATTCCTTCTTTTAGAAACAAGCCCACTTATCCACTCAACTGCCAGATACTACTCATCCAATATTCTAACACAACATAACTGACATCTCTCCGCACACTTTCTGAGTGGTTCGTATGATCCTACTGCCGCAAACCACACACCCAGCTCTTAGCCCCCAAACTACTTCCCATATTTGGGGCCTTTCCTTACAGTTTTGGTTGATTTTTTTCTTGGTATGATATCTCTGCTTTGGTTATTGCTGTTGAGTTCAACGATGGTAGAATGAGAGATTGAATTATTGGTGTTTTAAAATCATTTGTGAAATTGAATGACAGAATGTTGAAAGGTTAAGACTATATGTTTCAGAAAAGCTAATGAAATTGTATCAACAACCTAACGTGACAAACTGCAAACCAGCTGTGATGGAATAAACCAACAAAGATGGTTCCTCCCAACCAAATTGGTAGGTTATGTGAGGTTCTACACCAGTTTTAGAGGGACGAAGCATTTCTTATAAGCCCCTTCCTATTATTTCTTATAAAGGTCTTATCAAATACATTTAAAAGTCGTGAGGCTAAGGCGATAGGCAATAGGTTAAAGACGACAATATCCATTAGCAGTAGGTGTCTGAACTGTTGCAAATTACAGAGTTAGACACGGGGCGGTATAACAGTGAGAAGAGTGGATTGTGAGATTCCATTTCAACCGGAGAGAAAAGGAACATTCCAATATTCTTTATAAATTGCTATATTAAACCAGAGGATGATAACAGCCAACATGGACAATGTTACTATTTTAAGTTACTTTCCATATTCCTAGGTTATTTTCCAGATTCCTATTTTAAAAAATTGAATAAACTGATTTAGTTTTTCCAATTTTGACTTTTGCGAATCCCAATGGATTATCTCTTCATGGGGACTTTGAATTTCATAATATATAATTTTTTTTTTTAATTTCAGTTTTCAAATAATTATTTAA

mRNA sequence

ATGCACCAACTTCCACCGCCTGTGGTTGTTGGGGTTGTGGGCGTTATGGTTGGGGTTGTAGGCGTTATGGTCGGTCCGGTAGGGATTGTTTGTGCTGGCGGTGATGTTGGATCCACAATCGGGGTCTGGGTTGGAGTTGTGCCGCCCACTGGGGTGGTTGGATTCACAATGGGGATTGTGTCCATTCATAGTCTTCTTGGTTTGCTTCAAAATATGGAGTCCGTGCAATACTTGAACCTGAAGCCACAAAAAGCAAGTTTTCAAATAATTATTTAA

Coding sequence (CDS)

ATGCACCAACTTCCACCGCCTGTGGTTGTTGGGGTTGTGGGCGTTATGGTTGGGGTTGTAGGCGTTATGGTCGGTCCGGTAGGGATTGTTTGTGCTGGCGGTGATGTTGGATCCACAATCGGGGTCTGGGTTGGAGTTGTGCCGCCCACTGGGGTGGTTGGATTCACAATGGGGATTGTGTCCATTCATAGTCTTCTTGGTTTGCTTCAAAATATGGAGTCCGTGCAATACTTGAACCTGAAGCCACAAAAAGCAAGTTTTCAAATAATTATTTAA

Protein sequence

MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIVSIHSLLGLLQNMESVQYLNLKPQKASFQIII
Homology
[Close]
BLAST of Carg15388 vs. NCBI nr
Match: KAG7034688.1 (hypothetical protein SDJN02_04418, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIV 60
          MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIV
Sbjct: 1  MHQLPPPVVVGVVGVMVGVVGVMVGPVGIVCAGGDVGSTIGVWVGVVPPTGVVGFTMGIV 60

Query: 61 SIHSLLGLLQNMESVQYLNLKPQKASFQIII 92
          SIHSLLGLLQNMESVQYLNLKPQKASFQIII
Sbjct: 61 SIHSLLGLLQNMESVQYLNLKPQKASFQIII 91

The following BLAST results are available for this feature:
BLAST of Carg15388 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034688.11.8e-38100.00hypothetical protein SDJN02_04418, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15388 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15388 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15388 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15388-RACarg15388-RAmRNA