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Carg12479-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATGAGACGGAAAATTAAATTGTGAGAGGCTGTTCTTCTGCAGCGGTAGAGACAGTCGTACTCCGGAGTCAGATCAATAATTGGACGTGGTTCGATTTCTCTGCTCTGCAATCTCTTTAATCAGGCCTATAGTTCTGTATAGAATTACAGTTCGTTTTGCTTTATGCTTAATTTGTAGTCGTCGTTTGCTTCAGTCTGGCCTGGATTAGCGAAAATGGTTGGGCCTGCGAGACCTCTTTTTGTGCTATTTGGTTCTTCCATAGTTCAATTGAGCTTTGGCAATGGCGGATGGGGTTCTATTATTGCCGATTTGTACTCCCGCAGGGTATATGTTCTTAGTCTCTCTGGAGATTTCTGGTTCTTTCTTGTTTCCGCTTCGTTTCATGTTTCTATGTTTATTCTTGCTGGTTTCTTTTTGTTCGAATGAAGTTTAATTATCGAAAATGGCATATTGACCTCCTGAACGAATCTCTTGAAATGTGGCATGCTTGTGGTCATGTTGTGGATAAATTTTTGCGAACAATAGACCAGAATGGCTACTATTTAAAAATTTCAGGTTCAAAATGGACTGTGATTGATTTTTATTCTAAAACATGCGTGATGACTTTCCTTGGCATGTTCTCACCGTTGGCTTCCCTTCAATGGTTTGGAAAGTTCTTGCGGATTTCTAACTATTTCCTTCGTTCGTTTGATGAGATTTTGATCCGTACTGAGAGCACAATTTGTAGATCTCATACCTTTGTTGGTATCCTGATTAAGTTCCTCTGCAACTCCACAGGCAGATATCTTGCTACGCGGCTATAGTGGTTGGAATTCTAGGCAGGCTCTACAGGTTTTGCATCATGTCTTTCCAAAGGTACATTGCTGTGTTGCTGAAACTCTAGTTCAAGGATTGAAAAAACAGTAAGATAATTGAATTGGCCTTTTGCAAAATGTCTTGAAACCAAAATTTGCTATTTCTGACAGTCTTCTTGAACAGTAGTAGTTCATGTTTACCAATGAATAGTGTGGTTCTGTGAAGACAGCATGAAACCCCTTCATGGCTTTAAAAATTAGCACCAGATTCTGCTAGCGACTGTTGGTATTAATTGTGTTTTGGGTCGGTCTTTCTGCTCCGATACCATGTTAAATCAAACCGTAAACTCATAAGCTCTTGTCGATGTGTTTTTAGATGAACATTCTTAATAAAAACATGTTTCATATCATGTTTTTGTTCAAGTGGGTGGATATTTTGAAGCTAATGTTTTAAAGATATGTTGCCTCTCAGGACAGTGCCATTCAACCTTCATTGGTGATAGTCTACTTTGGTGGCAATGATGCAGTGCTTCCTTTCCCTTCTTCCCAGAAGACTTTGGTGCCACTTCCTGAATACGTAGAGAACATGAAGAAGATAGGCATTCATCTCAAGGTGAACTGTTAATATACTCTTAATCTTTGCATCAATCAAAATATTTCTCTGCTTATTCGTCTAAAACATTTGTCAGAGCCTCTCGGAGAAAACCCGAGTCATCTTCCTCACAGCTCCGCCCGTGAGCTATGCTCTAATTAAAGAAAAACTGAGGTGTGCTCATATTGATATATGCATATTTTGTTATGAACATGCTCGCTTTTTAAACCCCAATGCCTCATTTTATGTCCTGATTGATCCAGCGAGGAACACGCGAAATGTCGAACACTGGAATCATGTCGTAAGTACGCGGAGGCTTGTAAAGAACTTTGCAAGAAGATTGACGTGAAATGCATAGATGTGTGGAGTGCAATTCAAAAGAGAGATGACTGGCTCACTTCTTGCTTCACGTTAGTAGTTATAGTTCACAGAGGAGGATCATCTTTGATCCTTTTTGAATGGATTGAATGAGTTGTTTGTGGTTATTTCAGGGATGGCATTCATTTCACAGCAGAAGGGAGCCAGATAGTTGCAGAGGAAATTTGTAAGGTTTTGGAAGAGGCAGACTGGGAACCAAGTTTGCACTGGAAAGAATTGCCTATTGAATTTGGTAGTCCCACTAAGCCATCCAGCTCTGCAAGGCAATGGTAATCGATTCTTCGTTTACATCATACGAAGTGGATTATTATTATTATTATTATTATTATTTTCATTTATTTTAGTCCACGATTAAATGTTTTTGCATGTATTGACTCTCAGTTGTGTGAATGGGAATGGATCTCTCACATCTCCCTTGCAAACGTAGGCATATGGATTAAGGTTGGAATTTTCATTCGATTTTTTTTTTTTATCATTTATAAATAATAAAAATAATAAATACTCCTTGGAATTTAGTTAGAGTAATAAAAATAACAAAATTTTATATGAAATAGTTAAAATAATAATATTTAATTGATCAAAATCTAAAATTTATATCTAATAGATTTATTTTTAATTAAAATAAGAAATAAGTATAAATATATTATAGATTTATTAAATTAAAAACTGAAAGTTTATTTATGTACTAAATAAATATAATTAGAAATTTTAAATTTGAAACTCAATTAATTAATTGAAAATCTATCCCATTTTAAATATATATTTTAAAACTAACTCAGTGTTGAAATGATGACGTGTAAATGCAGGCCTAAAAGGAATAAAAGTCCTTGACTGCTACTTTTGGGATCCAACACAGTAATGGGCTCAGCCCACTCCTACAGATTAATGGGCTTCTTTATCGATCGAAGTAGCCCATCACGTGTAGCATTTGAGATTTAGTTTTTCCTTTCTTTTCCTTTTCTAATTAAATAAATAAACCTTATGAAATAGGTATATGCTGTTTGTGTGCTTGTCTGTGTGTATCAGAACTAAGCTAAATAAATAAATTATTAATTCGTGTG CATGAGACGGAAAATTAAATTGTGAGAGGCTGTTCTTCTGCAGCGGTAGAGACAGTCGTACTCCGGAGTCAGATCAATAATTGGACGTGGTTCGATTTCTCTGCTCTGCAATCTCTTTAATCAGGCCTATAGTTCTGTATAGAATTACAGTTCGTTTTGCTTTATGCTTAATTTGTAGTCGTCGTTTGCTTCAGTCTGGCCTGGATTAGCGAAAATGGTTGGGCCTGCGAGACCTCTTTTTGTGCTATTTGGTTCTTCCATAGTTCAATTGAGCTTTGGCAATGGCGGATGGGGTTCTATTATTGCCGATTTGTACTCCCGCAGGGCAGATATCTTGCTACGCGGCTATAGTGGTTGGAATTCTAGGCAGGCTCTACAGGTTTTGCATCATGTCTTTCCAAAGGACAGTGCCATTCAACCTTCATTGGTGATAGTCTACTTTGGTGGCAATGATGCAGTGCTTCCTTTCCCTTCTTCCCAGAAGACTTTGGTGCCACTTCCTGAATACGTAGAGAACATGAAGAAGATAGGCATTCATCTCAAGAGCCTCTCGGAGAAAACCCGAGTCATCTTCCTCACAGCTCCGCCCGTGAGCTATGCTCTAATTAAAGAAAAACTGAGCGAGGAACACGCGAAATGTCGAACACTGGAATCATGTCGTAAGTACGCGGAGGCTTGTAAAGAACTTTGCAAGAAGATTGACGTGAAATGCATAGATGTGTGGAGTGCAATTCAAAAGAGAGATGACTGGCTCACTTCTTGCTTCACGGATGGCATTCATTTCACAGCAGAAGGGAGCCAGATAGTTGCAGAGGAAATTTGTAAGGTTTTGGAAGAGGCAGACTGGGAACCAAGTTTGCACTGGAAAGAATTGCCTATTGAATTTGGTAGTCCCACTAAGCCATCCAGCTCTGCAAGGCAATGGTAATCGATTCTTCGTTTACATCATACGAAGTGGATTATTATTATTATTATTATTATTATTTTCATTTATTTTAGTCCACGATTAAATGTTTTTGCATGTATTGACTCTCAGTTGTGTGAATGGGAATGGATCTCTCACATCTCCCTTGCAAACGTAGGCATATGGATTAAGGCCTAAAAGGAATAAAAGTCCTTGACTGCTACTTTTGGGATCCAACACAGTAATGGGCTCAGCCCACTCCTACAGATTAATGGGCTTCTTTATCGATCGAAGTAGCCCATCACGTGTAGCATTTGAGATTTAGTTTTTCCTTTCTTTTCCTTTTCTAATTAAATAAATAAACCTTATGAAATAGGTATATGCTGTTTGTGTGCTTGTCTGTGTGTATCAGAACTAAGCTAAATAAATAAATTATTAATTCGTGTG ATGGTTGGGCCTGCGAGACCTCTTTTTGTGCTATTTGGTTCTTCCATAGTTCAATTGAGCTTTGGCAATGGCGGATGGGGTTCTATTATTGCCGATTTGTACTCCCGCAGGGCAGATATCTTGCTACGCGGCTATAGTGGTTGGAATTCTAGGCAGGCTCTACAGGTTTTGCATCATGTCTTTCCAAAGGACAGTGCCATTCAACCTTCATTGGTGATAGTCTACTTTGGTGGCAATGATGCAGTGCTTCCTTTCCCTTCTTCCCAGAAGACTTTGGTGCCACTTCCTGAATACGTAGAGAACATGAAGAAGATAGGCATTCATCTCAAGAGCCTCTCGGAGAAAACCCGAGTCATCTTCCTCACAGCTCCGCCCGTGAGCTATGCTCTAATTAAAGAAAAACTGAGCGAGGAACACGCGAAATGTCGAACACTGGAATCATGTCGTAAGTACGCGGAGGCTTGTAAAGAACTTTGCAAGAAGATTGACGTGAAATGCATAGATGTGTGGAGTGCAATTCAAAAGAGAGATGACTGGCTCACTTCTTGCTTCACGGATGGCATTCATTTCACAGCAGAAGGGAGCCAGATAGTTGCAGAGGAAATTTGTAAGGTTTTGGAAGAGGCAGACTGGGAACCAAGTTTGCACTGGAAAGAATTGCCTATTGAATTTGGTAGTCCCACTAAGCCATCCAGCTCTGCAAGGCAATGGTAA MVGPARPLFVLFGSSIVQLSFGNGGWGSIIADLYSRRADILLRGYSGWNSRQALQVLHHVFPKDSAIQPSLVIVYFGGNDAVLPFPSSQKTLVPLPEYVENMKKIGIHLKSLSEKTRVIFLTAPPVSYALIKEKLSEEHAKCRTLESCRKYAEACKELCKKIDVKCIDVWSAIQKRDDWLTSCFTDGIHFTAEGSQIVAEEICKVLEEADWEPSLHWKELPIEFGSPTKPSSSARQW Homology
BLAST of Carg12479-RA vs. NCBI nr
Match: KAG7017226.1 (GDSL esterase/lipase [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 489.2 bits (1258), Expect = 2.0e-134 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
BLAST of Carg12479-RA vs. NCBI nr
Match: XP_022934481.1 (GDSL esterase/lipase At2g38180-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 489.2 bits (1258), Expect = 2.0e-134 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
BLAST of Carg12479-RA vs. NCBI nr
Match: KAG6580476.1 (GDSL esterase/lipase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 485.3 bits (1248), Expect = 2.9e-133 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Carg12479-RA vs. NCBI nr
Match: XP_022934480.1 (GDSL esterase/lipase At2g38180-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 485.3 bits (1248), Expect = 2.9e-133 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Carg12479-RA vs. NCBI nr
Match: XP_022983665.1 (GDSL esterase/lipase At2g38180-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 482.6 bits (1241), Expect = 1.9e-132 Identity = 234/237 (98.73%), Postives = 234/237 (98.73%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy Swiss-Prot
Match: O80443 (GDSL esterase/lipase At2g38180 OS=Arabidopsis thaliana OX=3702 GN=At2g38180 PE=2 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 5.1e-80 Identity = 146/224 (65.18%), Postives = 176/224 (78.57%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy Swiss-Prot
Match: Q9SRM5 (GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana OX=3702 GN=CPRD49 PE=2 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 6.9e-77 Identity = 132/225 (58.67%), Postives = 181/225 (80.44%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy Swiss-Prot
Match: Q9FM04 (GDSL esterase/lipase At5g62930 OS=Arabidopsis thaliana OX=3702 GN=At5g62930 PE=2 SV=3) HSP 1 Score: 181.4 bits (459), Expect = 1.2e-44 Identity = 92/227 (40.53%), Postives = 140/227 (61.67%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy Swiss-Prot
Match: Q6NMR9 (GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana OX=3702 GN=At5g45920 PE=2 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.6e-36 Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy Swiss-Prot
Match: Q3SZ16 (Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Bos taurus OX=9913 GN=IAH1 PE=2 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 4.5e-28 Identity = 69/205 (33.66%), Postives = 118/205 (57.56%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy TrEMBL
Match: A0A6J1F1X9 (GDSL esterase/lipase At2g38180-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441645 PE=4 SV=1) HSP 1 Score: 489.2 bits (1258), Expect = 9.8e-135 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy TrEMBL
Match: A0A6J1F7U0 (GDSL esterase/lipase At2g38180-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441645 PE=4 SV=1) HSP 1 Score: 485.3 bits (1248), Expect = 1.4e-133 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy TrEMBL
Match: A0A6J1J6J0 (GDSL esterase/lipase At2g38180-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482210 PE=4 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 9.2e-133 Identity = 234/237 (98.73%), Postives = 234/237 (98.73%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy TrEMBL
Match: A0A6J1J303 (GDSL esterase/lipase At2g38180-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482210 PE=4 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 9.2e-133 Identity = 234/237 (98.73%), Postives = 234/237 (98.73%), Query Frame = 0
BLAST of Carg12479-RA vs. ExPASy TrEMBL
Match: A0A6J1J830 (GDSL esterase/lipase At2g38180-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482210 PE=4 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 1.3e-131 Identity = 233/236 (98.73%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of Carg12479-RA vs. TAIR 10
Match: AT2G38180.1 (SGNH hydrolase-type esterase superfamily protein ) HSP 1 Score: 298.9 bits (764), Expect = 3.6e-81 Identity = 146/224 (65.18%), Postives = 176/224 (78.57%), Query Frame = 0
BLAST of Carg12479-RA vs. TAIR 10
Match: AT3G11210.1 (SGNH hydrolase-type esterase superfamily protein ) HSP 1 Score: 288.5 bits (737), Expect = 4.9e-78 Identity = 132/225 (58.67%), Postives = 181/225 (80.44%), Query Frame = 0
BLAST of Carg12479-RA vs. TAIR 10
Match: AT5G62930.1 (SGNH hydrolase-type esterase superfamily protein ) HSP 1 Score: 181.4 bits (459), Expect = 8.4e-46 Identity = 92/227 (40.53%), Postives = 140/227 (61.67%), Query Frame = 0
BLAST of Carg12479-RA vs. TAIR 10
Match: AT5G45920.1 (SGNH hydrolase-type esterase superfamily protein ) HSP 1 Score: 153.7 bits (387), Expect = 1.9e-37 Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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