Carg12320-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12320-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	histone H4
Location	Carg_Chr01: 2926671 .. 2926982 (-)
Sequence length	312
RNA-Seq Expression	Carg12320-RA
Synteny	Carg12320-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCAGAGGCAAGGGAGGGAAGGGCCTTGGAAAAGGTGGTGCAAAGAGGCACCGTAAGGTTTTGAGGGACAACATCCAAGGAATCACGAAGCCGGCGATTCGGCGGTTGGCCAGACGAGGCGGCGTAAAGCGAATCAGTGGCTTGATCTACGAAGAAACTCGCGGCGTTCTTAAGATCTTCCTCGAGAATGTCATCCGCGACGCCGTGACCTACACTGAGCACGCTCGACGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGAGGCAAGGTCGTACTCTCTACGGCTTTGGAGGTTAG

mRNA sequence

ATGTCCGGCAGAGGCAAGGGAGGGAAGGGCCTTGGAAAAGGTGGTGCAAAGAGGCACCGTAAGGTTTTGAGGGACAACATCCAAGGAATCACGAAGCCGGCGATTCGGCGGTTGGCCAGACGAGGCGGCGTAAAGCGAATCAGTGGCTTGATCTACGAAGAAACTCGCGGCGTTCTTAAGATCTTCCTCGAGAATGTCATCCGCGACGCCGTGACCTACACTGAGCACGCTCGACGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGAGGCAAGGTCGTACTCTCTACGGCTTTGGAGGTTAG

Coding sequence (CDS)

ATGTCCGGCAGAGGCAAGGGAGGGAAGGGCCTTGGAAAAGGTGGTGCAAAGAGGCACCGTAAGGTTTTGAGGGACAACATCCAAGGAATCACGAAGCCGGCGATTCGGCGGTTGGCCAGACGAGGCGGCGTAAAGCGAATCAGTGGCTTGATCTACGAAGAAACTCGCGGCGTTCTTAAGATCTTCCTCGAGAATGTCATCCGCGACGCCGTGACCTACACTGAGCACGCTCGACGGAAGACCGTCACTGCTATGGATGTTGTGTATGCTCTCAAGAGGCAAGGTCGTACTCTCTACGGCTTTGGAGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

Homology

[Close]

BLAST of Carg12320-RA vs. NCBI nr
Match: KAG4994989.1 (hypothetical protein JHK86_031816 [Glycine max] >KAG5124986.1 hypothetical protein JHK82_031723 [Glycine max] >KAG5146415.1 hypothetical protein JHK84_031958 [Glycine max])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 22  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 81

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 124

[Close]

BLAST of Carg12320-RA vs. NCBI nr
Match: XP_016507811.1 (PREDICTED: uncharacterized protein LOC107825453 [Nicotiana tabacum])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. NCBI nr
Match: XP_040955110.1 (uncharacterized protein LOC107932445 [Gossypium hirsutum])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. NCBI nr
Match: KAF8369934.1 (hypothetical protein HHK36_032037 [Tetracentron sinense])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 115 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 174

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 175 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 217

[Close]

BLAST of Carg12320-RA vs. NCBI nr
Match: RZC63811.1 (hypothetical protein C5167_025549 [Papaver somniferum])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy TrEMBL
Match: K3YX00 (Histone H4 OS=Setaria italica OX=4555 GN=101768337 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy TrEMBL
Match: A0A2G9H387 (Histone H4 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07454 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy TrEMBL
Match: A0A7I8LBC1 (Histone H4 OS=Spirodela intermedia OX=51605 GN=SI7747_01001442 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy TrEMBL
Match: A0A1U7WSH0 (Histone H4 OS=Nicotiana sylvestris OX=4096 GN=LOC104226805 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. ExPASy TrEMBL
Match: A0A1U8PD97 (Histone H4 OS=Gossypium hirsutum OX=3635 GN=LOC107957992 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Carg12320-RA vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of Carg12320-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4994989.1	1.4e-47	100.00	hypothetical protein JHK86_031816 [Glycine max] >KAG5124986.1 hypothetical prote...	[more]
XP_016507811.1	1.4e-47	100.00	PREDICTED: uncharacterized protein LOC107825453 [Nicotiana tabacum]	[more]
XP_040955110.1	1.4e-47	100.00	uncharacterized protein LOC107932445 [Gossypium hirsutum]	[more]
KAF8369934.1	1.4e-47	100.00	hypothetical protein HHK36_032037 [Tetracentron sinense]	[more]
RZC63811.1	1.4e-47	100.00	hypothetical protein C5167_025549 [Papaver somniferum]	[more]

BLAST of Carg12320-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	1.8e-50	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	1.8e-50	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	1.8e-50	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	1.8e-50	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	1.8e-50	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Carg12320-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
K3YX00	6.7e-48	100.00	Histone H4 OS=Setaria italica OX=4555 GN=101768337 PE=3 SV=1	[more]
A0A2G9H387	6.7e-48	100.00	Histone H4 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07454 PE=3 SV=1	[more]
A0A7I8LBC1	6.7e-48	100.00	Histone H4 OS=Spirodela intermedia OX=51605 GN=SI7747_01001442 PE=3 SV=1	[more]
A0A1U7WSH0	6.7e-48	100.00	Histone H4 OS=Nicotiana sylvestris OX=4096 GN=LOC104226805 PE=3 SV=1	[more]
A0A1U8PD97	6.7e-48	100.00	Histone H4 OS=Gossypium hirsutum OX=3635 GN=LOC107957992 PE=3 SV=1	[more]

BLAST of Carg12320-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	1.3e-51	100.00	Histone superfamily protein	[more]
AT1G07820.1	1.3e-51	100.00	Histone superfamily protein	[more]
AT1G07820.2	1.3e-51	100.00	Histone superfamily protein	[more]
AT2G28740.1	1.3e-51	100.00	histone H4	[more]
AT3G45930.1	1.3e-51	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 97.79 coord: 5..16 score: 95.59 coord: 77..89 score: 90.05 coord: 20..39 score: 93.38 coord: 40..60 score: 93.56 coord: 62..76 score: 95.1
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..101 e-value: 8.01133E-43 score: 133.01
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 36..96 e-value: 1.8E-8 score: 34.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..103 e-value: 5.6E-59 score: 198.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 1..103
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12320	Carg12320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12320-RA:1	Carg12320-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12320-RA:cds	Carg12320-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12320-RA	Carg12320-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0046872	metal ion binding