Carg10489-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACGCTTCTCCAAGTAAGGCCTTGCAATCGCATTAGCCTATCCCATTCTTACATGTTCTTCCCTTTCTCAACCCCCAAATCCCCATTTCTCCCTCAGAATTCCCTTAAACCCTCGCTTCCTTCCATCTTTTGCTGTTTTCGATGTCAATGCCTTCTATTTTCGCGCCTTCCTCTCATTTTCGCCTCCCAATTTCACATTCGAAGCCGTCTCGCTATTCCAGAACTTCAATTTTCTTATCCCTCGATTATCGGTGCGGTAAATCCATCAATGCACCCTATAGAGGCACTCTCCGACGATCACTGCAAATCTGCTCTTCTTCGTCTGATGGCGCGTCTGGTTCGGTTCCCGCTGATAGCGATAACACTCCCAGGTTGGTTTTTGGTGTTCCTTTTTCTTTTTGTTTGTTTTTTCTAATGGTTCTTAAGGAGATGAAGTTCGGTGGAAACTGTGGAAAGTATAGTTGGCCGTAAATTTGCAGAGAGTTGAAAATAAAATTTAACGAAGAAGCTACTGGTTTAGTACTTGTGGAGTTCGTTTTGTTTGTTCTATGGTGTCTGCGTAGACGAAATCCATGTGAGCGCAATGGAAATTATTGTTTTCCTTGTTCTATTGCTGTTTTTCAGTAACTTCTGTATCATAGAGGGACCGGAGACCGTTCAGGATTTTGTTCAGATGCAATTCCAGGAAATCCAAGACAACATAAGGAGTCGTCGTAACAAAATTTTTCTTCTAATGGAAGAGGTTAGGTTCCTAATTGGAAGTTGATCCTTCAATTTTTCTCCCTTGACATTGGATTGTAAAGCTATCACCTAATGAAATAGAATGATTGTTTGAAGGGATTTTCTAACTATTTATTTGTCAATGGCGGTTAGGTTAGAAGATTACGAATTCAACAACGCCTAAAGACTCTAAGAGTTACTGGTGAGAATGACAATGAAGAGGCGAATGAAATGCCCGAGATTCCATCATCTATCCCTTTTCTTCCCCACGTGGTAACTGGCAAAATTATCTTTTGCAAAGCGTATGCAATTTTTTTTCTTTTTTTTTTTTTTAGTTCAACATGTGGAGTTGGAATGATTTAAACATATGACCATCTATGTCGAAAAAAATTGCCTAAAAACCACCCTGTTCCCATATAAAAAATAAAGTCCAATTCTCCTTTTGGGGCTTCGACTCTCACATAAAGTTCTTGTTTTTTACTAATGAATCGATAGTCAATCAATAGTCAAAGTCATTCCATTCCGGTTATTGGGGAAAAATCTTATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCAAACTCTTCTATGGTGTCTAGGTAATAGCTATGAATAGTTATCGACTGCCGGGAAAGAGTAGAAGAATGGGACCTATTATGAGACATACAATGCATTACAGACGTATGATCATTACACTTCAACCGGGATATTCTACTCCACCTCTAAACTAATTGAATTTTGCTTAGGTTGGGAGCACAATGTAGACAGTTAGAATGCTATTTTTTTCTGCCTGCTTCAGGAAGCTTAGGGTCATTATTACATTGAGAAGTTGAACTAAACATTGGCATCATACATAAGTTGGCTTCACTAAATGATATGCTAAGCTAGTGGGTGACTGTTACAATCATCACAGATAATTTAGATGAAATTGCAGGCATAGTTTTGAATAAAACCTGAACCCATTTTTCTAAGCCCATACGAACTATAATTGTGGTTAATAGGTTGTTTACTTTCTTTAATGATGGGTAAATTGTACCTGAACTTTATGATGCACCATGTTTCTTGTTTCTCTGTTTTGTGTTTTAGTTACTCTGTATCATCGTTATTTGACTGAGTGATTTCTACACTTCCTCCTTTGTAGACACCAAAGACGCTGAAGCAGCAATATTTAACCAGTTTATTGGTTATGTGGGGAATAATTGTCTTCGGTGGCCTTATTGCCCCAACTGTAAGTTGATCCCCCCCTCCGGGCTCGTTCTTCACCCTCATGAGTAGTTTCAGACTTGTTTAGTGTATTACCCTTATATGTGGGCTGTAGTTTCATATCCCGCCACTCCACTCCATCCCAAAAATTTAATGAAGAGATGAAACTGAGTAGAAAAACATAAAGGCTTTTCTTGAATTTAAAAACCAGCCTGATTTATGAACTGTGATTATTATTTTTGTGGATGCTTTTAGAATTCTATGGAGATTAGTACTTTTAGTTGCTTGAGTTTATATCAGAGAAGAGTCAGCAAATATTTATCCTCATGGGATAACTTATTGAGCTGGGGAATAATAGAAATCTCTACTAAAACGATGATGGCCTTTCTTTTAGATTCATGAGAATATGAAGCATGATAGAAAAGAATTTTAATGGAACTTCATATTTGAGAGTGATTAGTTATCAGATATCGTATGCTTTACCATGCGAACTACAAGTTAGGTGGAATAGATCTAATATTTACTGCTTTTCAGGAAAATAACGAAAGATATGGGTTCTGAAACATAGTGATGAATTCCCCTTTTTTCAGTTAAAGCATAACTAACTTATTGAAGTCTTGACGATCATGCTCAATGAATTTCTACATTTCGTACTTGGTCTATTAATGGCTCCGTCCATCTAAATGTTGGTGAAAAAACCCCTCCCATGGCAGCTGGAGCTAAAATTGGGATTAGGTGGAACTTCGTACGAAGATTTCATCCGCAACGTGAATTTGCCTATGCAATTAAGGTATTTCATGAAATGCAACTTCTTTCTAAATGTGAATTCTGTAGCTAATTCAATGTTTGCTTCAATTTCCCACTTTTTGAATCTCAATTTCAGTCAAGTGGATCCCATTGTGGCGTCATTTTCTGGTGGAGCTGTAGGTGTCATTTCGGCCTTGATGTTCGTTGAAGCTAGCAACGTTGGCAAACAAGAGAAAAAAAGGTGCAAATATTGTCATGGAACTGGTATGTATTCATTTTAAGCGATTCTATATTTATTAGTTTTGAACTTGTGGAATTGAATGTCACCATTCTCACACGTGATGTGATAAAATCACAATCTCAATTTAATTTAAGATCTACATCCCCGATTTAAAAAACAAGTTTAATTTTCTAATTTTGAGAATTACGGTTATTTGGTTCCTAAACTTTGGTGTGTCTAATTGATACTCTCAATTTTGTATTTAATTGCTTCTTGAACTTAAAAAAATGTCTAGACTCCTAAAGTTTCTATTTTGTATCTCGAACCTATCAAAATTTGTTAAATTTTAGGAATCAAATGAAAGTTTAGGGATTATGAATTTCATATTTTGATAGTTTTTAAGCATCCCTTCATAATCATATGGACAGGCTACTTGGCCTGCGCCCGATGTTCATCGAGTGGTGTATGTGTAAGCGCTGACCCCATCTCACTGTCTGCATCCTCTTCAAGCCGCCCTCTACGGGTGCCCAAAACTCAAAGATGCCTCAATTGTTCCGGTGCAGGAAAGGTACAAAATTCTATATTCTTCATTAATTCAAGAGTCGTTGGACTTGGAATTACCATTATCTTGCATCATTGGTCTCTTACCCTGTCGTGTTTAGAAACAATTCTATTTTTGAATACCAACTTGTTTGGCAGGATAATTTTTTAAACTATTGTTATTGTCCTATGCCTTCTTTCATTTTTTTATATTCAAATTTGATCATTTGTCATTTGTTTTAGTACAACTTGATATAAGTGTACTACATATTTAAATTATTGGCATGTTTTCTTGTAACCATTTGATATAAACTCGAGGCACTCCTTGTTTATACGTCGGCTTCATGGAATAATTTCTTTTGTGGGATACATCCGACACAACAATTAGAACGATAGAGAAAGAATGGTTCATCTTAATTTACTTATAATATGAAACTAAGCCTTAGCATGATGTGGTTGAATTTGTTATATTTGCTGAGGACTTAGTATGATTGTTTAGGTAATGTGCCCAACATGTCTGTGTACTGGGATGTTGATGGCAAGTGAGCACGACCCAAGATTCGACCCATTCGACTAAGGCTAAACTTGTAAGTTTCTTTCATATCTATCCTCTAACTAATTAATGAGTTTGAAAACTCTCCTATATTAAAAAGAAAATGATGAAGAATTGTTTATATGTTATTCTAATTATAAAATTCCAAATATATTTTATCTTTCAATTATTTGCAAATCCATTACGTAATATAATCTTATT AAACGCTTCTCCAAGTAAGGCCTTGCAATCGCATTAGCCTATCCCATTCTTACATGTTCTTCCCTTTCTCAACCCCCAAATCCCCATTTCTCCCTCAGAATTCCCTTAAACCCTCGCTTCCTTCCATCTTTTGCTGTTTTCGATGTCAATGCCTTCTATTTTCGCGCCTTCCTCTCATTTTCGCCTCCCAATTTCACATTCGAAGCCGTCTCGCTATTCCAGAACTTCAATTTTCTTATCCCTCGATTATCGGTGCGGTAAATCCATCAATGCACCCTATAGAGGCACTCTCCGACGATCACTGCAAATCTGCTCTTCTTCGTCTGATGGCGCGTCTGGTTCGGTTCCCGCTGATAGCGATAACACTCCCAGTAACTTCTGTATCATAGAGGGACCGGAGACCGTTCAGGATTTTGTTCAGATGCAATTCCAGGAAATCCAAGACAACATAAGGAGTCGTCGTAACAAAATTTTTCTTCTAATGGAAGAGGTTAGAAGATTACGAATTCAACAACGCCTAAAGACTCTAAGAGTTACTGGTGAGAATGACAATGAAGAGGCGAATGAAATGCCCGAGATTCCATCATCTATCCCTTTTCTTCCCCACGTGACACCAAAGACGCTGAAGCAGCAATATTTAACCAGTTTATTGGTTATGTGGGGAATAATTGTCTTCGGTGGCCTTATTGCCCCAACTCTGGAGCTAAAATTGGGATTAGGTGGAACTTCGTACGAAGATTTCATCCGCAACGTGAATTTGCCTATGCAATTAAGTCAAGTGGATCCCATTGTGGCGTCATTTTCTGGTGGAGCTGTAGGTGTCATTTCGGCCTTGATGTTCGTTGAAGCTAGCAACGTTGGCAAACAAGAGAAAAAAAGGTGCAAATATTGTCATGGAACTGGCTACTTGGCCTGCGCCCGATGTTCATCGAGTGGTGTATGTGTAAGCGCTGACCCCATCTCACTGTCTGCATCCTCTTCAAGCCGCCCTCTACGGGTGCCCAAAACTCAAAGATGCCTCAATTGTTCCGGTGCAGGAAAGGTAATGTGCCCAACATGTCTGTGTACTGGGATGTTGATGGCAAGTGAGCACGACCCAAGATTCGACCCATTCGACTAAGGCTAAACTTGTAAGTTTCTTTCATATCTATCCTCTAACTAATTAATGAGTTTGAAAACTCTCCTATATTAAAAAGAAAATGATGAAGAATTGTTTATATGTTATTCTAATTATAAAATTCCAAATATATTTTATCTTTCAATTATTTGCAAATCCATTACGTAATATAATCTTATT ATGTCAATGCCTTCTATTTTCGCGCCTTCCTCTCATTTTCGCCTCCCAATTTCACATTCGAAGCCGTCTCGCTATTCCAGAACTTCAATTTTCTTATCCCTCGATTATCGGTGCGGTAAATCCATCAATGCACCCTATAGAGGCACTCTCCGACGATCACTGCAAATCTGCTCTTCTTCGTCTGATGGCGCGTCTGGTTCGGTTCCCGCTGATAGCGATAACACTCCCAGTAACTTCTGTATCATAGAGGGACCGGAGACCGTTCAGGATTTTGTTCAGATGCAATTCCAGGAAATCCAAGACAACATAAGGAGTCGTCGTAACAAAATTTTTCTTCTAATGGAAGAGGTTAGAAGATTACGAATTCAACAACGCCTAAAGACTCTAAGAGTTACTGGTGAGAATGACAATGAAGAGGCGAATGAAATGCCCGAGATTCCATCATCTATCCCTTTTCTTCCCCACGTGACACCAAAGACGCTGAAGCAGCAATATTTAACCAGTTTATTGGTTATGTGGGGAATAATTGTCTTCGGTGGCCTTATTGCCCCAACTCTGGAGCTAAAATTGGGATTAGGTGGAACTTCGTACGAAGATTTCATCCGCAACGTGAATTTGCCTATGCAATTAAGTCAAGTGGATCCCATTGTGGCGTCATTTTCTGGTGGAGCTGTAGGTGTCATTTCGGCCTTGATGTTCGTTGAAGCTAGCAACGTTGGCAAACAAGAGAAAAAAAGGTGCAAATATTGTCATGGAACTGGCTACTTGGCCTGCGCCCGATGTTCATCGAGTGGTGTATGTGTAAGCGCTGACCCCATCTCACTGTCTGCATCCTCTTCAAGCCGCCCTCTACGGGTGCCCAAAACTCAAAGATGCCTCAATTGTTCCGGTGCAGGAAAGGTAATGTGCCCAACATGTCTGTGTACTGGGATGTTGATGGCAAGTGAGCACGACCCAAGATTCGACCCATTCGACTAA MSMPSIFAPSSHFRLPISHSKPSRYSRTSIFLSLDYRCGKSINAPYRGTLRRSLQICSSSSDGASGSVPADSDNTPSNFCIIEGPETVQDFVQMQFQEIQDNIRSRRNKIFLLMEEVRRLRIQQRLKTLRVTGENDNEEANEMPEIPSSIPFLPHVTPKTLKQQYLTSLLVMWGIIVFGGLIAPTLELKLGLGGTSYEDFIRNVNLPMQLSQVDPIVASFSGGAVGVISALMFVEASNVGKQEKKRCKYCHGTGYLACARCSSSGVCVSADPISLSASSSSRPLRVPKTQRCLNCSGAGKVMCPTCLCTGMLMASEHDPRFDPFD Homology
BLAST of Carg10489-RA vs. NCBI nr
Match: KAG7034492.1 (Protein ORANGE-LIKE, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 642.1 bits (1655), Expect = 2.6e-180 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
BLAST of Carg10489-RA vs. NCBI nr
Match: XP_023544811.1 (protein ORANGE-LIKE, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023544812.1 protein ORANGE-LIKE, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 635.6 bits (1638), Expect = 2.4e-178 Identity = 322/325 (99.08%), Postives = 322/325 (99.08%), Query Frame = 0
BLAST of Carg10489-RA vs. NCBI nr
Match: XP_022926079.1 (protein ORANGE-LIKE, chloroplastic-like [Cucurbita moschata] >XP_022926080.1 protein ORANGE-LIKE, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 634.4 bits (1635), Expect = 5.3e-178 Identity = 322/325 (99.08%), Postives = 322/325 (99.08%), Query Frame = 0
BLAST of Carg10489-RA vs. NCBI nr
Match: KAG6604341.1 (Protein ORANGE-LIKE, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 634.4 bits (1635), Expect = 5.3e-178 Identity = 321/323 (99.38%), Postives = 321/323 (99.38%), Query Frame = 0
BLAST of Carg10489-RA vs. NCBI nr
Match: XP_022978623.1 (protein ORANGE-LIKE, chloroplastic-like [Cucurbita maxima] >XP_022978624.1 protein ORANGE-LIKE, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 626.7 bits (1615), Expect = 1.1e-175 Identity = 318/325 (97.85%), Postives = 320/325 (98.46%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy Swiss-Prot
Match: Q8VYD8 (Protein ORANGE-LIKE, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORLIKE PE=1 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 6.7e-107 Identity = 198/274 (72.26%), Postives = 230/274 (83.94%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy Swiss-Prot
Match: A0A0D3MU35 (Protein ORANGE-GREEN, chloroplastic OS=Cucumis melo OX=3656 GN=OR PE=2 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 8.2e-97 Identity = 186/269 (69.14%), Postives = 219/269 (81.41%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy Swiss-Prot
Match: A0A0D3MU50 (Protein ORANGE-ORANGE, chloroplastic OS=Cucumis melo OX=3656 GN=OR PE=2 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 3.1e-96 Identity = 185/269 (68.77%), Postives = 218/269 (81.04%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy Swiss-Prot
Match: Q9FKF4 (Protein ORANGE, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OR PE=1 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 4.2e-93 Identity = 183/276 (66.30%), Postives = 215/276 (77.90%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy Swiss-Prot
Match: A2T1U1 (Protein ORANGE, chloroplastic OS=Brassica oleracea var. botrytis OX=3715 GN=OR PE=1 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.4e-91 Identity = 178/274 (64.96%), Postives = 215/274 (78.47%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy TrEMBL
Match: A0A6J1EK02 (protein ORANGE-LIKE, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433302 PE=4 SV=1) HSP 1 Score: 634.4 bits (1635), Expect = 2.6e-178 Identity = 322/325 (99.08%), Postives = 322/325 (99.08%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy TrEMBL
Match: A0A6J1ITR5 (protein ORANGE-LIKE, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478546 PE=4 SV=1) HSP 1 Score: 626.7 bits (1615), Expect = 5.4e-176 Identity = 318/325 (97.85%), Postives = 320/325 (98.46%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy TrEMBL
Match: A0A5D3CAS9 (Chaperone protein dnaJ-related isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001460 PE=4 SV=1) HSP 1 Score: 562.4 bits (1448), Expect = 1.2e-156 Identity = 286/325 (88.00%), Postives = 302/325 (92.92%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy TrEMBL
Match: A0A1S3CHB5 (uncharacterized protein LOC103500908 OS=Cucumis melo OX=3656 GN=LOC103500908 PE=4 SV=1) HSP 1 Score: 560.8 bits (1444), Expect = 3.6e-156 Identity = 285/325 (87.69%), Postives = 301/325 (92.62%), Query Frame = 0
BLAST of Carg10489-RA vs. ExPASy TrEMBL
Match: A0A0A0KKI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452720 PE=4 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 1.2e-154 Identity = 285/325 (87.69%), Postives = 301/325 (92.62%), Query Frame = 0
BLAST of Carg10489-RA vs. TAIR 10
Match: AT5G06130.2 (chaperone protein dnaJ-related ) HSP 1 Score: 388.7 bits (997), Expect = 4.8e-108 Identity = 198/274 (72.26%), Postives = 230/274 (83.94%), Query Frame = 0
BLAST of Carg10489-RA vs. TAIR 10
Match: AT5G06130.1 (chaperone protein dnaJ-related ) HSP 1 Score: 345.1 bits (884), Expect = 6.0e-95 Identity = 173/232 (74.57%), Postives = 202/232 (87.07%), Query Frame = 0
BLAST of Carg10489-RA vs. TAIR 10
Match: AT5G61670.1 (Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. ) HSP 1 Score: 342.8 bits (878), Expect = 3.0e-94 Identity = 183/276 (66.30%), Postives = 215/276 (77.90%), Query Frame = 0
BLAST of Carg10489-RA vs. TAIR 10
Match: AT5G61670.2 (Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. ) HSP 1 Score: 342.8 bits (878), Expect = 3.0e-94 Identity = 183/276 (66.30%), Postives = 215/276 (77.90%), Query Frame = 0
BLAST of Carg10489-RA vs. TAIR 10
Match: AT2G34860.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein ) HSP 1 Score: 43.5 bits (101), Expect = 3.7e-04 Identity = 28/99 (28.28%), Postives = 43/99 (43.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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