Carg09517-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09517-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 6626079 .. 6627339 (-)
Sequence length255
RNA-Seq ExpressionCarg09517-RA
SyntenyCarg09517-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGAATATGTTTGAATTTTTGTTTAAGTTTAAAGATAATTTAATATTAATTTACACACATTTCACTTTTTGTTGCTTGGGCGCCTCCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAACCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCAACAGATTAATTACGTCTCTCATCTTCAGCAACGGATTGGCTAGATCTCTCCGTCTCCAGCGTGACCTGAGGTTTAATCTCTCTATCTCTGGCTCTCTCTATTTCTATCCAACCACCGCCTCCTTCATTTTACGGCCGCCGGCGAATCTGTTCCGATTCCAACTTTTCCCCCAAAACCCCAAACCGGAATAAACCAAACCGAAACAGATTGCGGTTCATAAACTAATTTCTCTTTTTCCTGATATCGGTTCCGTTTTCGGCTTAAGAAAACCGAATCGATAGTCGTTATGTTCGATCGAATTGGTTTAGTGGCTGCATTTGTTGCCCTAATGGTGGGAAACTGGGGCCTGAGTGAATAACGGTTTCCTTCAAGGTTTCTGTTCCAATCCTCGCTTCCTGAATTGCTAATAGCTTCATGTTGATGAATTGATTTTAACACCTGATACGGTGAGCATGTCAATTTTAGTTATTCTAAATCCTTATTTCCTTCTGTGTATTTAGCTGATGTTATGCTCGAAGGCTCCGAATCTAAGAAAATTGAGAACTGAACCAGTTGGTCAGTTTGAATTCACAATTTTTTTTCTTGTTTATATTTAAAAATCTTACAGGATTATTTACTCTACACAAATGAATGATAATGATATTAAAAGTTACAAAATACTATATAAAAGAATGACGAACCCTTGATTTTTTGGTGGAAATTCCTGCTGTTTAAGCTAAACTCTTGAAATTTTGAGCAACCTTCTTGGCTAAATTGGGTATGAATTTATTTTGCTTTTCATTTGATCGATTCCACAGAACCCATTGAGAATTCTTAGTATTCTATATGAGGAAGAACAATGGGAGGTAGATTCGTAATGTTTACTTTTCCCTGTTTGTAGTTTTGATAAGATTGTAACTGGAACTTGATCTGCTTTTTTCTTTTTTTCTGACTTCTCGATGTTAATAAGATTTTCAGCTGTTTAAAGTTTGAACGATTTATCTTTAATTTTTTGGTATTTTCTTGCAATTGCAATGCAGTCTGGTCAGAGCTGA

mRNA sequence

ATGTGGAAGAATATGTTTGAATTTTTGTTTAAGTTTAAAGATAATTTAATATTAATTTACACACATTTCACTTTTTGTTGCTTGGGCGCCTCCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAACCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCAACAGATTAATTACTCTGGTCAGAGCTGA

Coding sequence (CDS)

ATGTGGAAGAATATGTTTGAATTTTTGTTTAAGTTTAAAGATAATTTAATATTAATTTACACACATTTCACTTTTTGTTGCTTGGGCGCCTCCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAACCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCAACAGATTAATTACTCTGGTCAGAGCTGA

Protein sequence

MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPVLLQSQSPLSPASTRQQQINYSGQS
Homology
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BLAST of Carg09517-RA vs. NCBI nr
Match: KAG7014071.1 (hypothetical protein SDJN02_24243, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 7.4e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPV 60
          MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPV
Sbjct: 1  MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPV 60

Query: 61 LLQSQSPLSPASTRQQQINYSGQS 85
          LLQSQSPLSPASTRQQQINYSGQS
Sbjct: 61 LLQSQSPLSPASTRQQQINYSGQS 84

The following BLAST results are available for this feature:
BLAST of Carg09517-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014071.17.4e-39100.00hypothetical protein SDJN02_24243, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09517-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09517-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09517-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg09517Carg09517gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09517-RA:2Carg09517-RA:2exon
Carg09517-RA:1Carg09517-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09517-RA:cdsCarg09517-RA:cds_2CDS
Carg09517-RA:cdsCarg09517-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg09517-RACarg09517-RA-proteinpolypeptide