Carg09517 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09517
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 6626079 .. 6627339 (-)
RNA-Seq ExpressionCarg09517
SyntenyCarg09517
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGAATATGTTTGAATTTTTGTTTAAGTTTAAAGATAATTTAATATTAATTTACACACATTTCACTTTTTGTTGCTTGGGCGCCTCCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAACCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCAACAGATTAATTACGTCTCTCATCTTCAGCAACGGATTGGCTAGATCTCTCCGTCTCCAGCGTGACCTGAGGTTTAATCTCTCTATCTCTGGCTCTCTCTATTTCTATCCAACCACCGCCTCCTTCATTTTACGGCCGCCGGCGAATCTGTTCCGATTCCAACTTTTCCCCCAAAACCCCAAACCGGAATAAACCAAACCGAAACAGATTGCGGTTCATAAACTAATTTCTCTTTTTCCTGATATCGGTTCCGTTTTCGGCTTAAGAAAACCGAATCGATAGTCGTTATGTTCGATCGAATTGGTTTAGTGGCTGCATTTGTTGCCCTAATGGTGGGAAACTGGGGCCTGAGTGAATAACGGTTTCCTTCAAGGTTTCTGTTCCAATCCTCGCTTCCTGAATTGCTAATAGCTTCATGTTGATGAATTGATTTTAACACCTGATACGGTGAGCATGTCAATTTTAGTTATTCTAAATCCTTATTTCCTTCTGTGTATTTAGCTGATGTTATGCTCGAAGGCTCCGAATCTAAGAAAATTGAGAACTGAACCAGTTGGTCAGTTTGAATTCACAATTTTTTTTCTTGTTTATATTTAAAAATCTTACAGGATTATTTACTCTACACAAATGAATGATAATGATATTAAAAGTTACAAAATACTATATAAAAGAATGACGAACCCTTGATTTTTTGGTGGAAATTCCTGCTGTTTAAGCTAAACTCTTGAAATTTTGAGCAACCTTCTTGGCTAAATTGGGTATGAATTTATTTTGCTTTTCATTTGATCGATTCCACAGAACCCATTGAGAATTCTTAGTATTCTATATGAGGAAGAACAATGGGAGGTAGATTCGTAATGTTTACTTTTCCCTGTTTGTAGTTTTGATAAGATTGTAACTGGAACTTGATCTGCTTTTTTCTTTTTTTCTGACTTCTCGATGTTAATAAGATTTTCAGCTGTTTAAAGTTTGAACGATTTATCTTTAATTTTTTGGTATTTTCTTGCAATTGCAATGCAGTCTGGTCAGAGCTGA

mRNA sequence

ATGTGGAAGAATATGTTTGAATTTTTGTTTAAGTTTAAAGATAATTTAATATTAATTTACACACATTTCACTTTTTGTTGCTTGGGCGCCTCCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAACCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCAACAGATTAATTACTCTGGTCAGAGCTGA

Coding sequence (CDS)

ATGTGGAAGAATATGTTTGAATTTTTGTTTAAGTTTAAAGATAATTTAATATTAATTTACACACATTTCACTTTTTGTTGCTTGGGCGCCTCCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAACCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCAACAGATTAATTACTCTGGTCAGAGCTGA

Protein sequence

MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPVLLQSQSPLSPASTRQQQINYSGQS
Homology
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BLAST of Carg09517 vs. NCBI nr
Match: KAG7014071.1 (hypothetical protein SDJN02_24243, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 7.4e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPV 60
          MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPV
Sbjct: 1  MWKNMFEFLFKFKDNLILIYTHFTFCCLGASFFLPPSTLLWFSFAHSRERLTPILRLKPV 60

Query: 61 LLQSQSPLSPASTRQQQINYSGQS 85
          LLQSQSPLSPASTRQQQINYSGQS
Sbjct: 61 LLQSQSPLSPASTRQQQINYSGQS 84

The following BLAST results are available for this feature:
BLAST of Carg09517 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014071.17.4e-39100.00hypothetical protein SDJN02_24243, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09517 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09517 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09517 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09517-RACarg09517-RAmRNA