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Carg06001-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTGCCTTACATATCTGAGATTATTGAGATTTCTGGTTCCACAGGTTCAGAAAGTGGGACAGGATCTAGTACTACAGGCTCTTCGTGCCTCCGCTTGGGAAAGACAAGCCATGGTCGGTTGGTCAGCCCAGCCTCACCGGAAGCCGGACATTCAAAACAGAGAGAGAAACATCGTTAATGTTACCAGCCGGTGCGTTGGAGGCACCGGTAGTTTGTACCACTCTCCATGGATTCCGCCGCATCAAAATCAGCATCCACCACCCAATGCCTCCGCCATGCGTTGTATTCAACCCGCCGGCGGATCTGCCATCAAAAGGGCTTCCTCCGGAACCGGCGTTTTCCTCCCTCGCAGACATGTAAACCCTTCCGACTGCCGCCATAAACAAGGTATTTTGACCTAAAACGATCTCAAAACGTCCCTGGTCTAAAAGACACATGGATTATCTTTCTCTAACCTTCGTCGTTATGATTAATTAGGTAGCCCAGCCATTAATTTTACAGAGGAAATGAAAAGCTCCATTCAAGCCCCATTCAACGGCTGGCTGTCATCCAGCATCGGTAAGCAAGTATCTCCAACAATTACCCCCTAATTTGTCATCGTTTTAAAGCAATTCTTTAAATGGGAGTTTCACAAATTACAGATTCCAGAAAGAATCCCCTTCTGCCACTGCCGCCAAGGAGCATCCGAGCAGAGGGAGCCGTAAAACAAGAACTTCACCTACCTCAAGAATGGACATACTGATGAAGAACGAAGCAGAGAACACTGAATCCATTTGTTTTTGCAGGTGTTGGATAAAGAATCCATTAAAGTAGCCAGAACAATATTAATTTATGCAGAAGGGTGATCTTGGACGAAGAGAATGAAAAGGGTGTTCTTAGTTAGATTGAAAATGGCAGTATAGGTTTAGAATAAAGAAGGAAGGGTTGCAGTGGGTGAAGGAAGAAGATGAAGAGGTTGAGAAGAAAAGGACAGGACAGAGATATGTTGTGTCCTACTAATAATAAATCTGTAATTTTGTGCCATAGTGATTTTAGATTTATGTTTTTTTTTTGGGTGAGGGCAAAATTATAAAAAATCCCTCTCTGCCTTGTAATTTTGTTCAATTGTTAATCATATGCTTTAATAAATAATAACATATATTTGATGTGTTCAA ATGGCCTGCCTTACATATCTGAGATTATTGAGATTTCTGGTTCCACAGGTTCAGAAAGTGGGACAGGATCTAGTACTACAGGCTCTTCGTGCCTCCGCTTGGGAAAGACAAGCCATGGTCGGTTGGTCAGCCCAGCCTCACCGGAAGCCGGACATTCAAAACAGAGAGAGAAACATCGTTAATGTTACCAGCCGGTGCGTTGGAGGCACCGGTAGTTTGTACCACTCTCCATGGATTCCGCCGCATCAAAATCAGCATCCACCACCCAATGCCTCCGCCATGCGTTGTATTCAACCCGCCGGCGGATCTGCCATCAAAAGGGCTTCCTCCGGAACCGGCGTTTTCCTCCCTCGCAGACATGTAAACCCTTCCGACTGCCGCCATAAACAAGGTAGCCCAGCCATTAATTTTACAGAGGAAATGAAAAGCTCCATTCAAGCCCCATTCAACGGCTGGCTGTCATCCAGCATCGATTCCAGAAAGAATCCCCTTCTGCCACTGCCGCCAAGGAGCATCCGAGCAGAGGGAGCCGTAAAACAAGAACTTCACCTACCTCAAGAATGGACATACTGATGAAGAACGAAGCAGAGAACACTGAATCCATTTGTTTTTGCAGGTGTTGGATAAAGAATCCATTAAAGTAGCCAGAACAATATTAATTTATGCAGAAGGGTGATCTTGGACGAAGAGAATGAAAAGGGTGTTCTTAGTTAGATTGAAAATGGCAGTATAGGTTTAGAATAAAGAAGGAAGGGTTGCAGTGGGTGAAGGAAGAAGATGAAGAGGTTGAGAAGAAAAGGACAGGACAGAGATATGTTGTGTCCTACTAATAATAAATCTGTAATTTTGTGCCATAGTGATTTTAGATTTATGTTTTTTTTTTGGGTGAGGGCAAAATTATAAAAAATCCCTCTCTGCCTTGTAATTTTGTTCAATTGTTAATCATATGCTTTAATAAATAATAACATATATTTGATGTGTTCAA ATGGCCTGCCTTACATATCTGAGATTATTGAGATTTCTGGTTCCACAGGTTCAGAAAGTGGGACAGGATCTAGTACTACAGGCTCTTCGTGCCTCCGCTTGGGAAAGACAAGCCATGGTCGGTTGGTCAGCCCAGCCTCACCGGAAGCCGGACATTCAAAACAGAGAGAGAAACATCGTTAATGTTACCAGCCGGTGCGTTGGAGGCACCGGTAGTTTGTACCACTCTCCATGGATTCCGCCGCATCAAAATCAGCATCCACCACCCAATGCCTCCGCCATGCGTTGTATTCAACCCGCCGGCGGATCTGCCATCAAAAGGGCTTCCTCCGGAACCGGCGTTTTCCTCCCTCGCAGACATGTAAACCCTTCCGACTGCCGCCATAAACAAGGTAGCCCAGCCATTAATTTTACAGAGGAAATGAAAAGCTCCATTCAAGCCCCATTCAACGGCTGGCTGTCATCCAGCATCGATTCCAGAAAGAATCCCCTTCTGCCACTGCCGCCAAGGAGCATCCGAGCAGAGGGAGCCGTAAAACAAGAACTTCACCTACCTCAAGAATGGACATACTGA MACLTYLRLLRFLVPQVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYHSPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAINFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY Homology
BLAST of Carg06001-RA vs. NCBI nr
Match: KAG7033322.1 (hypothetical protein SDJN02_07377, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 395.6 bits (1015), Expect = 2.4e-106 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Carg06001-RA vs. NCBI nr
Match: KAG6602637.1 (hypothetical protein SDJN03_07870, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of Carg06001-RA vs. NCBI nr
Match: XP_022957513.1 (uncharacterized protein LOC111458886 [Cucurbita moschata]) HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92 Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of Carg06001-RA vs. NCBI nr
Match: XP_023515357.1 (uncharacterized protein LOC111779387 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 340.5 bits (872), Expect = 9.3e-90 Identity = 164/175 (93.71%), Postives = 167/175 (95.43%), Query Frame = 0
BLAST of Carg06001-RA vs. NCBI nr
Match: XP_022990001.1 (uncharacterized protein LOC111487028 isoform X1 [Cucurbita maxima]) HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86 Identity = 161/176 (91.48%), Postives = 165/176 (93.75%), Query Frame = 0
BLAST of Carg06001-RA vs. ExPASy TrEMBL
Match: A0A6J1H0F4 (uncharacterized protein LOC111458886 OS=Cucurbita moschata OX=3662 GN=LOC111458886 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 5.7e-93 Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of Carg06001-RA vs. ExPASy TrEMBL
Match: A0A6J1JLQ9 (uncharacterized protein LOC111487028 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487028 PE=4 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 6.1e-87 Identity = 161/176 (91.48%), Postives = 165/176 (93.75%), Query Frame = 0
BLAST of Carg06001-RA vs. ExPASy TrEMBL
Match: A0A6J1JS02 (uncharacterized protein LOC111487028 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487028 PE=4 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 6.1e-87 Identity = 161/176 (91.48%), Postives = 165/176 (93.75%), Query Frame = 0
BLAST of Carg06001-RA vs. ExPASy TrEMBL
Match: A0A6J1BYQ6 (uncharacterized protein LOC111006679 OS=Momordica charantia OX=3673 GN=LOC111006679 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 2.9e-57 Identity = 119/179 (66.48%), Postives = 136/179 (75.98%), Query Frame = 0
BLAST of Carg06001-RA vs. ExPASy TrEMBL
Match: A0A5A7TJ83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001390 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 1.1e-56 Identity = 119/181 (65.75%), Postives = 134/181 (74.03%), Query Frame = 0
BLAST of Carg06001-RA vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04 Identity = 43/136 (31.62%), Postives = 51/136 (37.50%), Query Frame = 0
BLAST of Carg06001-RA vs. TAIR 10
Match: AT3G55690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39870.1); Has 76 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 3; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 2.9e-04 Identity = 31/94 (32.98%), Postives = 44/94 (46.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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