Carg06001 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06001
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTIP41-like protein
LocationCarg_Chr04: 21480356 .. 21481513 (-)
RNA-Seq ExpressionCarg06001
SyntenyCarg06001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGCCTTACATATCTGAGATTATTGAGATTTCTGGTTCCACAGGTTCAGAAAGTGGGACAGGATCTAGTACTACAGGCTCTTCGTGCCTCCGCTTGGGAAAGACAAGCCATGGTCGGTTGGTCAGCCCAGCCTCACCGGAAGCCGGACATTCAAAACAGAGAGAGAAACATCGTTAATGTTACCAGCCGGTGCGTTGGAGGCACCGGTAGTTTGTACCACTCTCCATGGATTCCGCCGCATCAAAATCAGCATCCACCACCCAATGCCTCCGCCATGCGTTGTATTCAACCCGCCGGCGGATCTGCCATCAAAAGGGCTTCCTCCGGAACCGGCGTTTTCCTCCCTCGCAGACATGTAAACCCTTCCGACTGCCGCCATAAACAAGGTATTTTGACCTAAAACGATCTCAAAACGTCCCTGGTCTAAAAGACACATGGATTATCTTTCTCTAACCTTCGTCGTTATGATTAATTAGGTAGCCCAGCCATTAATTTTACAGAGGAAATGAAAAGCTCCATTCAAGCCCCATTCAACGGCTGGCTGTCATCCAGCATCGGTAAGCAAGTATCTCCAACAATTACCCCCTAATTTGTCATCGTTTTAAAGCAATTCTTTAAATGGGAGTTTCACAAATTACAGATTCCAGAAAGAATCCCCTTCTGCCACTGCCGCCAAGGAGCATCCGAGCAGAGGGAGCCGTAAAACAAGAACTTCACCTACCTCAAGAATGGACATACTGATGAAGAACGAAGCAGAGAACACTGAATCCATTTGTTTTTGCAGGTGTTGGATAAAGAATCCATTAAAGTAGCCAGAACAATATTAATTTATGCAGAAGGGTGATCTTGGACGAAGAGAATGAAAAGGGTGTTCTTAGTTAGATTGAAAATGGCAGTATAGGTTTAGAATAAAGAAGGAAGGGTTGCAGTGGGTGAAGGAAGAAGATGAAGAGGTTGAGAAGAAAAGGACAGGACAGAGATATGTTGTGTCCTACTAATAATAAATCTGTAATTTTGTGCCATAGTGATTTTAGATTTATGTTTTTTTTTTGGGTGAGGGCAAAATTATAAAAAATCCCTCTCTGCCTTGTAATTTTGTTCAATTGTTAATCATATGCTTTAATAAATAATAACATATATTTGATGTGTTCAA

mRNA sequence

ATGGCCTGCCTTACATATCTGAGATTATTGAGATTTCTGGTTCCACAGGTTCAGAAAGTGGGACAGGATCTAGTACTACAGGCTCTTCGTGCCTCCGCTTGGGAAAGACAAGCCATGGTCGGTTGGTCAGCCCAGCCTCACCGGAAGCCGGACATTCAAAACAGAGAGAGAAACATCGTTAATGTTACCAGCCGGTGCGTTGGAGGCACCGGTAGTTTGTACCACTCTCCATGGATTCCGCCGCATCAAAATCAGCATCCACCACCCAATGCCTCCGCCATGCGTTGTATTCAACCCGCCGGCGGATCTGCCATCAAAAGGGCTTCCTCCGGAACCGGCGTTTTCCTCCCTCGCAGACATGTAAACCCTTCCGACTGCCGCCATAAACAAGGTAGCCCAGCCATTAATTTTACAGAGGAAATGAAAAGCTCCATTCAAGCCCCATTCAACGGCTGGCTGTCATCCAGCATCGATTCCAGAAAGAATCCCCTTCTGCCACTGCCGCCAAGGAGCATCCGAGCAGAGGGAGCCGTAAAACAAGAACTTCACCTACCTCAAGAATGGACATACTGATGAAGAACGAAGCAGAGAACACTGAATCCATTTGTTTTTGCAGGTGTTGGATAAAGAATCCATTAAAGTAGCCAGAACAATATTAATTTATGCAGAAGGGTGATCTTGGACGAAGAGAATGAAAAGGGTGTTCTTAGTTAGATTGAAAATGGCAGTATAGGTTTAGAATAAAGAAGGAAGGGTTGCAGTGGGTGAAGGAAGAAGATGAAGAGGTTGAGAAGAAAAGGACAGGACAGAGATATGTTGTGTCCTACTAATAATAAATCTGTAATTTTGTGCCATAGTGATTTTAGATTTATGTTTTTTTTTTGGGTGAGGGCAAAATTATAAAAAATCCCTCTCTGCCTTGTAATTTTGTTCAATTGTTAATCATATGCTTTAATAAATAATAACATATATTTGATGTGTTCAA

Coding sequence (CDS)

ATGGCCTGCCTTACATATCTGAGATTATTGAGATTTCTGGTTCCACAGGTTCAGAAAGTGGGACAGGATCTAGTACTACAGGCTCTTCGTGCCTCCGCTTGGGAAAGACAAGCCATGGTCGGTTGGTCAGCCCAGCCTCACCGGAAGCCGGACATTCAAAACAGAGAGAGAAACATCGTTAATGTTACCAGCCGGTGCGTTGGAGGCACCGGTAGTTTGTACCACTCTCCATGGATTCCGCCGCATCAAAATCAGCATCCACCACCCAATGCCTCCGCCATGCGTTGTATTCAACCCGCCGGCGGATCTGCCATCAAAAGGGCTTCCTCCGGAACCGGCGTTTTCCTCCCTCGCAGACATGTAAACCCTTCCGACTGCCGCCATAAACAAGGTAGCCCAGCCATTAATTTTACAGAGGAAATGAAAAGCTCCATTCAAGCCCCATTCAACGGCTGGCTGTCATCCAGCATCGATTCCAGAAAGAATCCCCTTCTGCCACTGCCGCCAAGGAGCATCCGAGCAGAGGGAGCCGTAAAACAAGAACTTCACCTACCTCAAGAATGGACATACTGA

Protein sequence

MACLTYLRLLRFLVPQVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYHSPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAINFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY
Homology
BLAST of Carg06001 vs. NCBI nr
Match: KAG7033322.1 (hypothetical protein SDJN02_07377, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 395.6 bits (1015), Expect = 2.4e-106
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query: 1   MACLTYLRLLRFLVPQVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIV 60
           MACLTYLRLLRFLVPQVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIV
Sbjct: 1   MACLTYLRLLRFLVPQVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIV 60

Query: 61  NVTSRCVGGTGSLYHSPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRH 120
           NVTSRCVGGTGSLYHSPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRH
Sbjct: 61  NVTSRCVGGTGSLYHSPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRH 120

Query: 121 VNPSDCRHKQGSPAINFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQ 180
           VNPSDCRHKQGSPAINFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQ
Sbjct: 121 VNPSDCRHKQGSPAINFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQ 180

Query: 181 ELHLPQEWTY 191
           ELHLPQEWTY
Sbjct: 181 ELHLPQEWTY 190

BLAST of Carg06001 vs. NCBI nr
Match: KAG6602637.1 (hypothetical protein SDJN03_07870, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH
Sbjct: 207 QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 266

Query: 76  SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 135
           SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI
Sbjct: 267 SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 326

Query: 136 NFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           NFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY
Sbjct: 327 NFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 381

BLAST of Carg06001 vs. NCBI nr
Match: XP_022957513.1 (uncharacterized protein LOC111458886 [Cucurbita moschata])

HSP 1 Score: 350.1 bits (897), Expect = 1.2e-92
Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQA VGW AQPHRKPDIQ+RERNIVNVTSRCVGGTGSLYH
Sbjct: 207 QVQKVGQDLVLQALRASAWERQAKVGWLAQPHRKPDIQSRERNIVNVTSRCVGGTGSLYH 266

Query: 76  SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 135
           SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI
Sbjct: 267 SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 326

Query: 136 NFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           NFTEEMKSSIQAPFN WLSSS DSRKNPLLPL PRSIRAEGAVKQELHLPQEWTY
Sbjct: 327 NFTEEMKSSIQAPFNAWLSSSFDSRKNPLLPL-PRSIRAEGAVKQELHLPQEWTY 380

BLAST of Carg06001 vs. NCBI nr
Match: XP_023515357.1 (uncharacterized protein LOC111779387 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.5 bits (872), Expect = 9.3e-90
Identity = 164/175 (93.71%), Postives = 167/175 (95.43%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQA VGWSAQPHRKP+IQNRERNIV+VTSRC GGTGSLYH
Sbjct: 207 QVQKVGQDLVLQALRASAWERQAKVGWSAQPHRKPEIQNRERNIVDVTSRCSGGTGSLYH 266

Query: 76  SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 135
           S WIPPHQNQHPPPNASAMRCI PAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI
Sbjct: 267 SAWIPPHQNQHPPPNASAMRCIHPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 326

Query: 136 NFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           NFTEEMKSSIQAPFNGWLSSS DSRKNPLLP  PR+IRAEGAVK ELHLPQEWTY
Sbjct: 327 NFTEEMKSSIQAPFNGWLSSSFDSRKNPLLP-QPRTIRAEGAVKHELHLPQEWTY 380

BLAST of Carg06001 vs. NCBI nr
Match: XP_022990001.1 (uncharacterized protein LOC111487028 isoform X1 [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 161/176 (91.48%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQA VGWSAQPHRK +IQNRERNIVNVTSR  GGTGSL H
Sbjct: 207 QVQKVGQDLVLQALRASAWERQAKVGWSAQPHRKSEIQNRERNIVNVTSRSGGGTGSLNH 266

Query: 76  SPWI-PPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPA 135
            PWI PPHQ+QHPPPNASAMRCI PAGGSAIKRASSGTGVFLPRRHVNPS+CRHKQGSPA
Sbjct: 267 CPWIPPPHQSQHPPPNASAMRCIHPAGGSAIKRASSGTGVFLPRRHVNPSECRHKQGSPA 326

Query: 136 INFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           INFTEEMKSS QAPFNGWLSSS+DSRKNPLLPLP  SIRAEGAVKQELHLPQEWTY
Sbjct: 327 INFTEEMKSSNQAPFNGWLSSSVDSRKNPLLPLPRSSIRAEGAVKQELHLPQEWTY 382

BLAST of Carg06001 vs. ExPASy TrEMBL
Match: A0A6J1H0F4 (uncharacterized protein LOC111458886 OS=Cucurbita moschata OX=3662 GN=LOC111458886 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.7e-93
Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQA VGW AQPHRKPDIQ+RERNIVNVTSRCVGGTGSLYH
Sbjct: 207 QVQKVGQDLVLQALRASAWERQAKVGWLAQPHRKPDIQSRERNIVNVTSRCVGGTGSLYH 266

Query: 76  SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 135
           SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI
Sbjct: 267 SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 326

Query: 136 NFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           NFTEEMKSSIQAPFN WLSSS DSRKNPLLPL PRSIRAEGAVKQELHLPQEWTY
Sbjct: 327 NFTEEMKSSIQAPFNAWLSSSFDSRKNPLLPL-PRSIRAEGAVKQELHLPQEWTY 380

BLAST of Carg06001 vs. ExPASy TrEMBL
Match: A0A6J1JLQ9 (uncharacterized protein LOC111487028 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487028 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.1e-87
Identity = 161/176 (91.48%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQA VGWSAQPHRK +IQNRERNIVNVTSR  GGTGSL H
Sbjct: 207 QVQKVGQDLVLQALRASAWERQAKVGWSAQPHRKSEIQNRERNIVNVTSRSGGGTGSLNH 266

Query: 76  SPWI-PPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPA 135
            PWI PPHQ+QHPPPNASAMRCI PAGGSAIKRASSGTGVFLPRRHVNPS+CRHKQGSPA
Sbjct: 267 CPWIPPPHQSQHPPPNASAMRCIHPAGGSAIKRASSGTGVFLPRRHVNPSECRHKQGSPA 326

Query: 136 INFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           INFTEEMKSS QAPFNGWLSSS+DSRKNPLLPLP  SIRAEGAVKQELHLPQEWTY
Sbjct: 327 INFTEEMKSSNQAPFNGWLSSSVDSRKNPLLPLPRSSIRAEGAVKQELHLPQEWTY 382

BLAST of Carg06001 vs. ExPASy TrEMBL
Match: A0A6J1JS02 (uncharacterized protein LOC111487028 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487028 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.1e-87
Identity = 161/176 (91.48%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQKVGQDLVLQALRASAWERQA VGWSAQPHRK +IQNRERNIVNVTSR  GGTGSL H
Sbjct: 206 QVQKVGQDLVLQALRASAWERQAKVGWSAQPHRKSEIQNRERNIVNVTSRSGGGTGSLNH 265

Query: 76  SPWI-PPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPA 135
            PWI PPHQ+QHPPPNASAMRCI PAGGSAIKRASSGTGVFLPRRHVNPS+CRHKQGSPA
Sbjct: 266 CPWIPPPHQSQHPPPNASAMRCIHPAGGSAIKRASSGTGVFLPRRHVNPSECRHKQGSPA 325

Query: 136 INFTEEMKSSIQAPFNGWLSSSIDSRKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
           INFTEEMKSS QAPFNGWLSSS+DSRKNPLLPLP  SIRAEGAVKQELHLPQEWTY
Sbjct: 326 INFTEEMKSSNQAPFNGWLSSSVDSRKNPLLPLPRSSIRAEGAVKQELHLPQEWTY 381

BLAST of Carg06001 vs. ExPASy TrEMBL
Match: A0A6J1BYQ6 (uncharacterized protein LOC111006679 OS=Momordica charantia OX=3673 GN=LOC111006679 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.9e-57
Identity = 119/179 (66.48%), Postives = 136/179 (75.98%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASAWERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLYH 75
           QVQ+V  DLVLQA+ AS+W RQA V W+A PHRKP+IQNRERNI     RC G  G LY 
Sbjct: 200 QVQQVRHDLVLQAICASSWGRQAKVDWAAPPHRKPEIQNRERNIGLGGGRCSGAAG-LYQ 259

Query: 76  SPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI 135
           S W+PP Q+Q PPPNASA+RCI P GG A+KRASSGTGVFLPRR+VNPS+CR KQG+PA+
Sbjct: 260 SAWLPPPQSQPPPPNASAVRCIHP-GGPAVKRASSGTGVFLPRRYVNPSECRQKQGTPAV 319

Query: 136 NFTEEMKSSIQAPFNGWLSSSIDS----RKNPLLPLPPRSIRAEGAVKQELHLPQEWTY 191
            F EEM + IQAPFNG LS   D+    R   LLPL PRS+R E A+ QELHLPQEWTY
Sbjct: 320 RFPEEMINPIQAPFNGCLSPGFDAMLARRNTSLLPL-PRSLRGEAAINQELHLPQEWTY 375

BLAST of Carg06001 vs. ExPASy TrEMBL
Match: A0A5A7TJ83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001390 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.1e-56
Identity = 119/181 (65.75%), Postives = 134/181 (74.03%), Query Frame = 0

Query: 16  QVQKVGQDLVLQALRASA-WERQAMVGWSAQPHRKPDIQNRERNIVNVTSRCVGGTGSLY 75
           QVQ+V QDLVLQALRAS+   RQA V WSAQPH K +IQNRERN+VN + RC  G G LY
Sbjct: 181 QVQQVKQDLVLQALRASSLGGRQAKVSWSAQPHWKQEIQNRERNVVNASGRCGVGAGGLY 240

Query: 76  HSPWIPPHQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPA 135
           HSPW+PP QNQ P PN + +RCI P   S +KRASSGTGVFLPRR++NP+DCR KQG P+
Sbjct: 241 HSPWLPPLQNQQPTPNTTVVRCIHPV-RSGVKRASSGTGVFLPRRYINPTDCRQKQGIPS 300

Query: 136 INFTEEMKSSIQAPFNGWLSSSID----SRKNPLLPLPPRSIRAEGAVKQE-LHLPQEWT 191
           + F EEMKS IQAP NG LS   D     R NPLLPL PRS R EG + QE  HLPQEWT
Sbjct: 301 VRFAEEMKSPIQAPLNGCLSPGFDPILSRRNNPLLPL-PRSFRTEGGMNQEHHHLPQEWT 359

BLAST of Carg06001 vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 43/136 (31.62%), Postives = 51/136 (37.50%), Query Frame = 0

Query: 82  HQNQHPPPNASAMRCIQPAGGSAIKRASSGTGVFLPRRHVNPSDCRHKQGSPAI----NF 141
           HQNQ P     A+       GS  +  S GTGVFLPR H    + R K G   +      
Sbjct: 181 HQNQRPRSGVKAVF----VDGSGSRTGSGGTGVFLPRGHGTVVESRKKSGCSTVIIPARV 240

Query: 142 TEEMK------------SSIQAPFNGWL-----SSSIDSRKNPLLPLPPRSIRAEGAVKQ 191
            E +K            SS   PF+  L     +  I S KN  L         E  +  
Sbjct: 241 VEALKVHFDKLGVPSTFSSDIPPFHDALLVSMNNKKIKSNKNTSLSRVQSGSPYEMEMSA 300

BLAST of Carg06001 vs. TAIR 10
Match: AT3G55690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39870.1); Has 76 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 3; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.9e-04
Identity = 31/94 (32.98%), Postives = 44/94 (46.81%), Query Frame = 0

Query: 103 SAIKRASSGTGVFLPRRHVNPSDC-RHKQGSPAINFTEEMKSSIQAPFNGWLSSSIDSRK 162
           +A+K  S+GTGVFLPR++ NPSD  + K G   +    + K  I+          +  + 
Sbjct: 207 TAVKSPSTGTGVFLPRKYSNPSDSPKKKSGDGCVKVVNQQKPKIEV-------LPVRCKP 266

Query: 163 NPLLPLPP-RS----IRAEGAVKQELHLPQEWTY 191
           N    L   RS    +   G +K E  L QEW Y
Sbjct: 267 NSKAGLSTGRSKIDYVAGGGCLKHEKPLLQEWMY 293

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7033322.12.4e-106100.00hypothetical protein SDJN02_07377, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6602637.15.4e-98100.00hypothetical protein SDJN03_07870, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022957513.11.2e-9296.57uncharacterized protein LOC111458886 [Cucurbita moschata][more]
XP_023515357.19.3e-9093.71uncharacterized protein LOC111779387 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022990001.11.3e-8691.48uncharacterized protein LOC111487028 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H0F45.7e-9396.57uncharacterized protein LOC111458886 OS=Cucurbita moschata OX=3662 GN=LOC1114588... [more]
A0A6J1JLQ96.1e-8791.48uncharacterized protein LOC111487028 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JS026.1e-8791.48uncharacterized protein LOC111487028 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1BYQ62.9e-5766.48uncharacterized protein LOC111006679 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A5A7TJ831.1e-5665.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G59050.12.2e-0431.62unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G55690.12.9e-0432.98unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33356:SF17H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1-LIKEcoord: 45..190
NoneNo IPR availablePANTHERPTHR33356TIP41-LIKE PROTEINcoord: 45..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06001-RACarg06001-RAmRNA