Carg05008-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05008-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane protein
Location	Carg_Chr08: 997571 .. 998815 (+)
Sequence length	872
RNA-Seq Expression	Carg05008-RA
Synteny	Carg05008-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAGAAATTTCTAGTGGAACAGTCCGATGGAAAAAGAGCAACGCCTCGAGCTGATCAAACTCGCCATTGAGAGGCTGCTTGATGAGAACAAGAACAAGCAATCCTCTGATCGAAGCTACATCCACGATTGCGATGAAAACGGGGACCGTACTCTTCTCCACGATTTGCTCTCTCAGGTACGCAAGATTTACGGTTTTGATTTCCGAAACACAAACTTCGAAATTCTTATGGCTACGCCTTTTGTAATTTATTCTTCGAAATCGATGTTTGATTGAGGTTTTTGAGTTGTTGCTTCGTATTTCTTTGATTTCTTCTTCGTATGTTTCGATTGTGAGTTTCTGGAATTTCTTTCATTACGCACTGTTAGGAAATCTCAATTTATGGAGGAAAATTGAATTCGAATCTGGAGTGTTGTTGTTAAATCATTTGAAATCCACCTAGATTTGGCCTTCTGAACTTGCTCATGATCATATCACCCTTCCAAATCCTGTCTCTGCTTCTTTGGATAGTAAATTTGTAAACCAAATTCATTTTCCTCAACACCAACAGATAGAATCGCTGAAAGAAGGAACGGAATCAGAGGAGTTGGCTTCTGCATTAGATAATTTGAAATCGAAAGCTAAGAACTCTGATGATGATGATGATGATGAGTTTAGTAGAGAAGACATTGTTAAGGAACTGAAGAAGGTGAAAAGGCAAAACGTTTTAACTCAGTGTCTTGTCTCAGTGATGATAGTGGTGACTGTTGTTTGGCAGCTTTCTGAGGTCTCCATTATGTTGAATGTAAAAGATCAAATCAGCCATCCCTTTAGATTCCTGGGCAGTTTGATCTCAGGAGCGCTCAAACGCCCAAAAACCATTGTTGAGAATTCACCAAAACAAGAACATGATGAAGCTTCTATGCTTCCCACTCTCCAAATCCCAGAACTTCCTCATATGGGTTTGCAGTAATTTTGGATTTGATGATGGAAAACATTGGTTGTTCTTGAGCTACAAAGGGAGATGGGGGTTAGACAACAATTTTTCAAACGGTGCTGATGAAGAAACATGGAGAGATTTGCTTGGAGGAATCCCCAGATTACGTAATTGTTATATTTGTTTGGTTTTGTGAAAATTTGCTTTGTAATTTAGGGGTCGGATTATCTTTTGAGGAAAAAAAAAAAATCAAAATTAAAGTGAAAGAACCGTTTTTTCTCCTCCTAATTTAGTTTTCATAATTGGTAGCTTTTACATTAGAAACTATT

mRNA sequence

CATAGAAATTTCTAGTGGAACAGTCCGATGGAAAAAGAGCAACGCCTCGAGCTGATCAAACTCGCCATTGAGAGGCTGCTTGATGAGAACAAGAACAAGCAATCCTCTGATCGAAGCTACATCCACGATTGCGATGAAAACGGGGACCGTACTCTTCTCCACGATTTGCTCTCTCAGATAGAATCGCTGAAAGAAGGAACGGAATCAGAGGAGTTGGCTTCTGCATTAGATAATTTGAAATCGAAAGCTAAGAACTCTGATGATGATGATGATGATGAGTTTAGTAGAGAAGACATTGTTAAGGAACTGAAGAAGGTGAAAAGGCAAAACGTTTTAACTCAGTGTCTTGTCTCAGTGATGATAGTGGTGACTGTTGTTTGGCAGCTTTCTGAGGTCTCCATTATGTTGAATGTAAAAGATCAAATCAGCCATCCCTTTAGATTCCTGGGCAGTTTGATCTCAGGAGCGCTCAAACGCCCAAAAACCATTGTTGAGAATTCACCAAAACAAGAACATGATGAAGCTTCTATGCTTCCCACTCTCCAAATCCCAGAACTTCCTCATATGGGTTTGCAGTAATTTTGGATTTGATGATGGAAAACATTGGTTGTTCTTGAGCTACAAAGGGAGATGGGGGTTAGACAACAATTTTTCAAACGGTGCTGATGAAGAAACATGGAGAGATTTGCTTGGAGGAATCCCCAGATTACGTAATTGTTATATTTGTTTGGTTTTGTGAAAATTTGCTTTGTAATTTAGGGGTCGGATTATCTTTTGAGGAAAAAAAAAAAATCAAAATTAAAGTGAAAGAACCGTTTTTTCTCCTCCTAATTTAGTTTTCATAATTGGTAGCTTTTACATTAGAAACTATT

Coding sequence (CDS)

ATGGAAAAAGAGCAACGCCTCGAGCTGATCAAACTCGCCATTGAGAGGCTGCTTGATGAGAACAAGAACAAGCAATCCTCTGATCGAAGCTACATCCACGATTGCGATGAAAACGGGGACCGTACTCTTCTCCACGATTTGCTCTCTCAGATAGAATCGCTGAAAGAAGGAACGGAATCAGAGGAGTTGGCTTCTGCATTAGATAATTTGAAATCGAAAGCTAAGAACTCTGATGATGATGATGATGATGAGTTTAGTAGAGAAGACATTGTTAAGGAACTGAAGAAGGTGAAAAGGCAAAACGTTTTAACTCAGTGTCTTGTCTCAGTGATGATAGTGGTGACTGTTGTTTGGCAGCTTTCTGAGGTCTCCATTATGTTGAATGTAAAAGATCAAATCAGCCATCCCTTTAGATTCCTGGGCAGTTTGATCTCAGGAGCGCTCAAACGCCCAAAAACCATTGTTGAGAATTCACCAAAACAAGAACATGATGAAGCTTCTATGCTTCCCACTCTCCAAATCCCAGAACTTCCTCATATGGGTTTGCAGTAA

Protein sequence

MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESEELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPELPHMGLQ

Homology

[Close]

BLAST of Carg05008-RA vs. NCBI nr
Match: KAG7025378.1 (hypothetical protein SDJN02_11873 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60

Query: 61  EELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQL 120
           EELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQL
Sbjct: 61  EELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQL 120

Query: 121 SEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPELPHM 180
           SEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPELPHM
Sbjct: 121 SEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPELPHM 180

Query: 181 GLQ 184
           GLQ
Sbjct: 181 GLQ 183

[Close]

BLAST of Carg05008-RA vs. NCBI nr
Match: XP_022959912.1 (uncharacterized protein LOC111460826 [Cucurbita moschata] >XP_022959913.1 uncharacterized protein LOC111460826 [Cucurbita moschata] >XP_022959914.1 uncharacterized protein LOC111460826 [Cucurbita moschata])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 181/187 (96.79%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL----KE 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDE GDRTLLHDLLSQIESL    KE
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDETGDRTLLHDLLSQIESLKEGTKE 60

Query: 61  GTESEELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120
           GTESEELASALDNLKSKAKNSDDDDDD+FSREDIVKELKKVKRQNVLTQCLVSVMIVVTV
Sbjct: 61  GTESEELASALDNLKSKAKNSDDDDDDDFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120

Query: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180
           VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE
Sbjct: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180

Query: 181 LPHMGLQ 184
           LPHMGLQ
Sbjct: 181 LPHMGLQ 187

[Close]

BLAST of Carg05008-RA vs. NCBI nr
Match: KAG6592966.1 (hypothetical protein SDJN03_12442, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 181/186 (97.31%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           MEKEQRL+LIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES
Sbjct: 1   MEKEQRLDLIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60

Query: 61  EELASALDNLKSKAKNS---DDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVV 120
           EELASALDNLKSKAKNS   DDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVV
Sbjct: 61  EELASALDNLKSKAKNSDDDDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVV 120

Query: 121 WQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPEL 180
           WQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPEL
Sbjct: 121 WQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPEL 180

Query: 181 PHMGLQ 184
           PHM LQ
Sbjct: 181 PHMDLQ 186

[Close]

BLAST of Carg05008-RA vs. NCBI nr
Match: XP_023513706.1 (uncharacterized protein LOC111778234 [Cucurbita pepo subsp. pepo] >XP_023522745.1 uncharacterized protein LOC111786748 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 176/187 (94.12%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL----KE 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL    KE
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKERTKE 60

Query: 61  GTESEELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120
           GTESE+LASALDNLKSKAKNS   DDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV
Sbjct: 61  GTESEKLASALDNLKSKAKNS---DDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120

Query: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180
           VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENS KQEHDEASMLP LQIPE
Sbjct: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSSKQEHDEASMLPPLQIPE 180

Query: 181 LPHMGLQ 184
           L HMGLQ
Sbjct: 181 LHHMGLQ 184

[Close]

BLAST of Carg05008-RA vs. NCBI nr
Match: XP_023004225.1 (uncharacterized protein LOC111497620 [Cucurbita maxima])

HSP 1 Score: 313.9 bits (803), Expect = 9.0e-82
Identity = 174/202 (86.14%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL------ 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL      
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTKE 60

Query: 61  ------KEGTESEELASALDNLKSKAKNS-------DDDDDDEFSREDIVKELKKVKRQN 120
                 KEGTESEELASALDNLK+K+KNS       DDDD++EFS+EDIVKELKKVKRQN
Sbjct: 61  GTKEGTKEGTESEELASALDNLKAKSKNSVKEEIDDDDDDEEEFSKEDIVKELKKVKRQN 120

Query: 121 VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQ 180
           VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTI+ENSPKQ
Sbjct: 121 VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIIENSPKQ 180

Query: 181 EHDEASMLPTLQIPELPHMGLQ 184
           EHDEASMLP LQIPELPH+GL+
Sbjct: 181 EHDEASMLPPLQIPELPHVGLR 202

[Close]

BLAST of Carg05008-RA vs. ExPASy TrEMBL
Match: A0A6J1H7B2 (uncharacterized protein LOC111460826 OS=Cucurbita moschata OX=3662 GN=LOC111460826 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.1e-88
Identity = 181/187 (96.79%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL----KE 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDE GDRTLLHDLLSQIESL    KE
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDETGDRTLLHDLLSQIESLKEGTKE 60

Query: 61  GTESEELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120
           GTESEELASALDNLKSKAKNSDDDDDD+FSREDIVKELKKVKRQNVLTQCLVSVMIVVTV
Sbjct: 61  GTESEELASALDNLKSKAKNSDDDDDDDFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120

Query: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180
           VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE
Sbjct: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180

Query: 181 LPHMGLQ 184
           LPHMGLQ
Sbjct: 181 LPHMGLQ 187

[Close]

BLAST of Carg05008-RA vs. ExPASy TrEMBL
Match: A0A6J1KTZ8 (uncharacterized protein LOC111497620 OS=Cucurbita maxima OX=3661 GN=LOC111497620 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 174/202 (86.14%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL------ 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL      
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTKE 60

Query: 61  ------KEGTESEELASALDNLKSKAKNS-------DDDDDDEFSREDIVKELKKVKRQN 120
                 KEGTESEELASALDNLK+K+KNS       DDDD++EFS+EDIVKELKKVKRQN
Sbjct: 61  GTKEGTKEGTESEELASALDNLKAKSKNSVKEEIDDDDDDEEEFSKEDIVKELKKVKRQN 120

Query: 121 VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQ 180
           VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTI+ENSPKQ
Sbjct: 121 VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIIENSPKQ 180

Query: 181 EHDEASMLPTLQIPELPHMGLQ 184
           EHDEASMLP LQIPELPH+GL+
Sbjct: 181 EHDEASMLPPLQIPELPHVGLR 202

[Close]

BLAST of Carg05008-RA vs. ExPASy TrEMBL
Match: A0A5A7T973 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002400 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 132/189 (69.84%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           ME+EQRLELI  AI+RLL++NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTES
Sbjct: 1   MEEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES 60

Query: 61  EELASALDNLKSKAKN--SDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVW 120
           +E  SALD LK+K ++   ++  DDE SREDIVKELKK+KRQN+LT CL+SVMIV+T+VW
Sbjct: 61  DEFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVW 120

Query: 121 QLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVE----NSPKQEHDEASMLPTLQI 180
           QLSEVSI+LNVKD+ISHPFR LG+ ISG  KRPKTIV+    NS +Q++DE S+LP L+I
Sbjct: 121 QLSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKI 180

Query: 181 PELPHMGLQ 184
           PELPHMGLQ
Sbjct: 181 PELPHMGLQ 189

[Close]

BLAST of Carg05008-RA vs. ExPASy TrEMBL
Match: A0A1S3CAM6 (uncharacterized protein LOC103498843 OS=Cucumis melo OX=3656 GN=LOC103498843 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 132/189 (69.84%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           ME+EQRLELI  AI+RLL++NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTES
Sbjct: 1   MEEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES 60

Query: 61  EELASALDNLKSKAKN--SDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVW 120
           +E  SALD LK+K ++   ++  DDE SREDIVKELKK+KRQN+LT CL+SVMIV+T+VW
Sbjct: 61  DEFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVW 120

Query: 121 QLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVE----NSPKQEHDEASMLPTLQI 180
           QLSEVSI+LNVKD+ISHPFR LG+ ISG  KRPKTIV+    NS +Q++DE S+LP L+I
Sbjct: 121 QLSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKI 180

Query: 181 PELPHMGLQ 184
           PELPHMGLQ
Sbjct: 181 PELPHMGLQ 189

[Close]

BLAST of Carg05008-RA vs. ExPASy TrEMBL
Match: A0A0A0K9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095320 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 8.3e-57
Identity = 131/188 (69.68%), Postives = 157/188 (83.51%), Query Frame = 0


Query: 2   EKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESE 61
           E+EQRLELI  AI RLL +NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTESE
Sbjct: 3   EEEQRLELISHAIRRLLVDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62

Query: 62  ELASALDNLKSKAKNSDDDD--DDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQ 121
           EL SALD LK+K ++S  ++  DDE SRED+VKELKK+KRQN+LT CL+SVMIV+TVVWQ
Sbjct: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122

Query: 122 LSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVEN----SPKQEHDEASMLPTLQIP 181
           LSEVSI+LNVKD+ISHPFR LG+ ISG  +RPKTIV+N    S KQ+HDE S+LP L+I 
Sbjct: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182

Query: 182 ELPHMGLQ 184
           +LP +GLQ
Sbjct: 183 DLPQVGLQ 190

[Close]

BLAST of Carg05008-RA vs. TAIR 10
Match: AT1G27300.1 (unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-20
Identity = 70/194 (36.08%), Postives = 110/194 (56.70%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIES------- 60
           ME  + +E +  AIE+LL E + +++S  ++I D D   D+  L  L+SQ+ES       
Sbjct: 1   MESSEDVENLSRAIEKLLHEKRKREASGDAFIEDAD---DQLFLSSLISQLESPNPKGKE 60

Query: 61  -LKEGTESEELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMI 120
            +  G E E+   + D+  SK K S+     E S E+I K++KKVK+QN +T  L+S  I
Sbjct: 61  DVITGEEEEKEEESADSSPSKGK-SEGQRQLEESIEEIAKDIKKVKKQNKITHVLLSATI 120

Query: 121 VVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVEN--------SPKQEHD 178
           ++T+VWQLSE S++  +KD+ISHP R +G +++G  K     ++N        + +  H 
Sbjct: 121 ILTLVWQLSEYSMIFMLKDRISHPVRSIGGMLNGMFKGKLRPIKNQLAGTSNSNDQNNHG 180

The following BLAST results are available for this feature:

BLAST of Carg05008-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025378.1	3.1e-90	100.00	hypothetical protein SDJN02_11873 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022959912.1	1.9e-87	96.79	uncharacterized protein LOC111460826 [Cucurbita moschata] >XP_022959913.1 unchar...	[more]
KAG6592966.1	1.9e-87	97.31	hypothetical protein SDJN03_12442, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023513706.1	4.0e-82	94.12	uncharacterized protein LOC111778234 [Cucurbita pepo subsp. pepo] >XP_023522745....	[more]
XP_023004225.1	9.0e-82	86.14	uncharacterized protein LOC111497620 [Cucurbita maxima]	[more]

BLAST of Carg05008-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05008-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7B2	9.1e-88	96.79	uncharacterized protein LOC111460826 OS=Cucurbita moschata OX=3662 GN=LOC1114608...	[more]
A0A6J1KTZ8	4.4e-82	86.14	uncharacterized protein LOC111497620 OS=Cucurbita maxima OX=3661 GN=LOC111497620...	[more]
A0A5A7T973	1.5e-58	69.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CAM6	1.5e-58	69.84	uncharacterized protein LOC103498843 OS=Cucumis melo OX=3656 GN=LOC103498843 PE=...	[more]
A0A0A0K9P4	8.3e-57	69.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095320 PE=4 SV=1	[more]

BLAST of Carg05008-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27300.1	6.1e-20	36.08	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	PANTHER	PTHR35280	F17L21.9	coord: 4..182
IPR021013	ATPase, vacuolar ER assembly factor, Vma12	PFAM	PF11712	Vma12	coord: 47..147 e-value: 7.7E-6 score: 26.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05008	Carg05008	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05008-RA:1	Carg05008-RA:1	exon
Carg05008-RA:2	Carg05008-RA:2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05008-RA:five_prime_utr	Carg05008-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05008-RA:cds	Carg05008-RA:cds	CDS
Carg05008-RA:cds	Carg05008-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05008-RA:three_prime_utr	Carg05008-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05008-RA	Carg05008-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane