Carg04460-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04460-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 20317534 .. 20320986 (-)
Sequence length	231
RNA-Seq Expression	Carg04460-RA
Synteny	Carg04460-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAAGAAGAAGAAGAAGAAGAAGAAGGAAACGTGAGCTCAGTTAACCCGGAAGTATTCGGGTTGAACGGTCGGTTCGGTTTGTCAAAATGATATGAACCGGATGATTCGGCTTGATCGGTTCGGGTCTCGATTGATTCTGCACCACGTACATCAAAGATATTTCTTATGCAAACATGGAAATTTCCCGCTAGATTCTTCGCATTTTCCTTTCTCCGTATTTTCCACCGGCAAAATTCTCTCCTAGTTCAAGATTTCGATCGTCTGGTTTTGAGCCGACGATGAAGCCTCAATTCCCGATTATCATATCTAGTAGTTTTGGAAGTAATGAATTCTAATGCTATCGCCATCGTGTGCGGAAATCTTCACTGATGCTCCGATATATGGTGCTTGAAAATGACGGAAATGGAAATGAGAAATTCAAATCATTTGGAAATTCGATTCATGTTTCGCGTTCGCTGTTTCCTGGTAGTAGTTGGTGGAACTTAGATGAGCGTATGAAAGTAGAAATTGAAGCTGCGAAGCCGCTTATCTTTATTTAGCTCTTCATCAGGTATGGAAATTGGTTTGGGATATTAATCAATGGCTTCTCCTCGTTCCTTCTGTAGCTTCAACACTGCTGAGGCGCAGTTACTAAGCTGTTCTGTATTATCACTGTGCTGATGTTTAGTTTTAGCGTTCTCTATACATCTGAAATTGATTTATCTTTTACATGTTGACCACCGCACTAATTAGAAAAATCTTTCAAGAAAGATTCCATTCCCGCTTCTTCTTTTTTTTCTTCCTTCTTTTGATGATAACAAGAAACTTTTCATCAGGTAAATTTAAAAGAATTACATCATAGCCAGCCCAAAAAAAGCCTCTCCAATTGGTTGGTCCCAGGCTTGGAAGTTTTCTAAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGAAGATTGAGGTTAGTTCATGAACCAGTTGCTTATTGAAAAGTGGGATTTGATTTAGTGGGTTATGAGGAATCCTTGTATGTCTTTTGAGGTTAAATTGTTACGTGATCACGATGGGTATGTATAATACTTAATCGTTGATAGCCATGATTAGCACCTTTAGCAGATGTGTTCAATTTTCCTTAGAAGCCAATACCTTAATTTGTCAAAGTCTTTCTATGAACAGTGTGTATAACAATGTTCGTATGAGATCCCACGTTGATTGGAAAGGAAAATGAAATATTTTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCATTTTAAAACTTTGAGGGAAAGTCCAAAAGGGAAAATCCCAAAGAGGACAATATCTGCTAACGGTGAGTTCGGGCTGTTACAAATGGTATCAGAGCTAGACACTGAGCAATGTGCCAGTGAGGAGGATGAGCCTCAGGGGTGGACACAAGGCGGTGTGCCAGTAAGGATGCTGGGCCTCTAAAGGGGTGGATTTGGGGGTCCCACGTCGTTAGAGAAGGGAATGAATGCCAACGAGGACACTGGATTTCGAAGGAGGGTGGATTGTGAGATCTCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTAGAAACCTTCCTCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAAAACAATATCTACTAGCAGATGGTTTGGGCCGTTACCGTTTGAATAGTTTAAATTGTCAAAGTATATATAGTATTGTGTTTACTTGAATCTCTGTTGAACTTCTGGATTGATATCAGCTTACATTTGCTGCTTTTGCAGTTCAGTTGTCTGGTAAATTGCTTTGTTAATTTGTCTTTATTCAAATTCTTTGCTCACATTTTGTCTGTGCAGCATAGTTGGCATTGGTTTCCATTTAAAAAGGAGAATAGTAGAACCCATAATTCTCTCAAATACAGATTTGTACTGACAACTTGTCCATTAAGAAACAATAACGTCATCAAACAAGTTCAAATTTGTTCATAAAATGGTCATATCCAAGTCTTTCTCTTGAATTGCAATAAGAATCATCGTCTTATGCCCTTACTCAGGCCTACTGCTCAATGCCTCTCTATGATCAACTTCATAAGAATCAATCGTCAAATGGTCATGTCCATGCTTCTTATGTTCTTTCCAAGCGATTGAACTGTTTCTTTGTTTTCATTATTATTTTAAATTTAGCTTAGATTTTGAAAATGTTATTTTTAGAGTAACAAAACTAAGAAGTTCATAGATGGGAGTAGTGTTTACAAGCTTAGTTTTCAAAAAGATCGAACACAAAAAACAAAATAGGTATTGAACATGGTGATTTTTGTGTCGGGAATACTCCACCAGTTTCATACTAAAACAAGTGTCACTGTGCTTTGAGTTTCAGGTTATAAAAGCCTCAATCTGTTATCACTCTGCTGAAAAATTGACATGGAGTTAATTGATATACTTCATCCCTGCTGAAGAACACCTAAAATATTTCTGCTTTTTCAGATTGCATGTAAGTTAAGTTACCAAGTTTATTCCTGTTTGCTTGTGCTTTCCCCTGCCAAACCATTCATCATATTTAATGCCTTCTTTGTGGTCTCTCTCTCTGAACCTAAGACACAACGTCCTTAGGTCTTGTGCAATCAAGGCTACCTATTGAGAATTTTGGCTGGAGATAAATATCAGAATCTTTTAAGGATAGATTTAGAAATTGGGCTTAGTTAGTTAGGAGGCATCCGTTTCGTTTTCTAATTCTTTCTTGGTATTCTCTTTCATCTCTTTTGTAACTATGGATTTTTCTAATATAGCAGTTGGAATGGTAACTGTTAGCTTCTTAGTTGGTGGATATTGTTTCCAAAACCCAAAGTTACCTCTAAAGCATCATGTCTCTTAATTTGGAGAAAGACTAAATTGTAGGAAAAGTGCTCGCTTCTTTTCAACCAGGCACTCGCCTCACCTATTTTCCACACTTGAACGGTGCAACAATGGTGAGCTTGGCGAGCACATCAATAGAGATGCTTGCTAAATCACTGTACAATGCAAGAAACATTTGCCCCACTTTGCTGTGCTCCATAGGCACGCACATAAAAGGTTGAGTTGAGTCACACTTATTACAAACTAGACTGGTTTTTTTTGTGAGATCCCACATCGGGTGGAGAGGGGAACAAACTATTTCTAATAAATGTGTGGAAACCTCTCCCTAGTAGACATGTTTTAAAATCGTGAGGTTGACGGCGATACGGACCAAAACGGATAAATGCTAGTAGTAAGTTTGGGTTATTACATTTTTACTCCGTGTGTTCTTATACAGTTCACTTACCAAAATAGTCTTGTTTGTCATCTGAAGGGGTAAAGAAACATGAATCATTTTTGTCTTGATTTCAATTGGGTTTTGTTTCAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCTGTAACTCTAGGGGAAGTATGA

mRNA sequence

GCAAAAGAAGAAGAAGAAGAAGAAGAAGGAAACGTGAGCTCAGTTAACCCGGAAGTATTCGGGTTGAACGGTCGGCTTGGAAGTTTTCTAAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGAAGATTGAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCTGTAACTCTAGGGGAAGTATGA

Coding sequence (CDS)

GCAAAAGAAGAAGAAGAAGAAGAAGAAGGAAACGTGAGCTCAGTTAACCCGGAAGTATTCGGGTTGAACGGTCGGCTTGGAAGTTTTCTAAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGAAGATTGAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCTGTAACTCTAGGGGAAGTATGA

Protein sequence

AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVTVEGQTYTISAVTLGEV

Homology

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BLAST of Carg04460-RA vs. NCBI nr
Match: KAG7033093.1 (hypothetical protein SDJN02_07146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVT 60
          AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVT
Sbjct: 1  AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVT 60

Query: 61 VEGQTYTISAVTLGEV 77
          VEGQTYTISAVTLGEV
Sbjct: 61 VEGQTYTISAVTLGEV 76

The following BLAST results are available for this feature:

BLAST of Carg04460-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033093.1	1.0e-31	100.00	hypothetical protein SDJN02_07146, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg04460-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04460-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04460-RA vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04460	Carg04460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04460-RA:3	Carg04460-RA:3	exon
Carg04460-RA:2	Carg04460-RA:2	exon
Carg04460-RA:1	Carg04460-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04460-RA:cds	Carg04460-RA:cds_3	CDS
Carg04460-RA:cds	Carg04460-RA:cds_2	CDS
Carg04460-RA:cds	Carg04460-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04460-RA	Carg04460-RA-protein	polypeptide