Carg04460 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04460
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 20317534 .. 20320986 (-)
RNA-Seq Expression	Carg04460
Synteny	Carg04460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAAGAAGAAGAAGAAGAAGAAGAAGGAAACGTGAGCTCAGTTAACCCGGAAGTATTCGGGTTGAACGGTCGGTTCGGTTTGTCAAAATGATATGAACCGGATGATTCGGCTTGATCGGTTCGGGTCTCGATTGATTCTGCACCACGTACATCAAAGATATTTCTTATGCAAACATGGAAATTTCCCGCTAGATTCTTCGCATTTTCCTTTCTCCGTATTTTCCACCGGCAAAATTCTCTCCTAGTTCAAGATTTCGATCGTCTGGTTTTGAGCCGACGATGAAGCCTCAATTCCCGATTATCATATCTAGTAGTTTTGGAAGTAATGAATTCTAATGCTATCGCCATCGTGTGCGGAAATCTTCACTGATGCTCCGATATATGGTGCTTGAAAATGACGGAAATGGAAATGAGAAATTCAAATCATTTGGAAATTCGATTCATGTTTCGCGTTCGCTGTTTCCTGGTAGTAGTTGGTGGAACTTAGATGAGCGTATGAAAGTAGAAATTGAAGCTGCGAAGCCGCTTATCTTTATTTAGCTCTTCATCAGGTATGGAAATTGGTTTGGGATATTAATCAATGGCTTCTCCTCGTTCCTTCTGTAGCTTCAACACTGCTGAGGCGCAGTTACTAAGCTGTTCTGTATTATCACTGTGCTGATGTTTAGTTTTAGCGTTCTCTATACATCTGAAATTGATTTATCTTTTACATGTTGACCACCGCACTAATTAGAAAAATCTTTCAAGAAAGATTCCATTCCCGCTTCTTCTTTTTTTTCTTCCTTCTTTTGATGATAACAAGAAACTTTTCATCAGGTAAATTTAAAAGAATTACATCATAGCCAGCCCAAAAAAAGCCTCTCCAATTGGTTGGTCCCAGGCTTGGAAGTTTTCTAAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGAAGATTGAGGTTAGTTCATGAACCAGTTGCTTATTGAAAAGTGGGATTTGATTTAGTGGGTTATGAGGAATCCTTGTATGTCTTTTGAGGTTAAATTGTTACGTGATCACGATGGGTATGTATAATACTTAATCGTTGATAGCCATGATTAGCACCTTTAGCAGATGTGTTCAATTTTCCTTAGAAGCCAATACCTTAATTTGTCAAAGTCTTTCTATGAACAGTGTGTATAACAATGTTCGTATGAGATCCCACGTTGATTGGAAAGGAAAATGAAATATTTTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCATTTTAAAACTTTGAGGGAAAGTCCAAAAGGGAAAATCCCAAAGAGGACAATATCTGCTAACGGTGAGTTCGGGCTGTTACAAATGGTATCAGAGCTAGACACTGAGCAATGTGCCAGTGAGGAGGATGAGCCTCAGGGGTGGACACAAGGCGGTGTGCCAGTAAGGATGCTGGGCCTCTAAAGGGGTGGATTTGGGGGTCCCACGTCGTTAGAGAAGGGAATGAATGCCAACGAGGACACTGGATTTCGAAGGAGGGTGGATTGTGAGATCTCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTAGAAACCTTCCTCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAAAACAATATCTACTAGCAGATGGTTTGGGCCGTTACCGTTTGAATAGTTTAAATTGTCAAAGTATATATAGTATTGTGTTTACTTGAATCTCTGTTGAACTTCTGGATTGATATCAGCTTACATTTGCTGCTTTTGCAGTTCAGTTGTCTGGTAAATTGCTTTGTTAATTTGTCTTTATTCAAATTCTTTGCTCACATTTTGTCTGTGCAGCATAGTTGGCATTGGTTTCCATTTAAAAAGGAGAATAGTAGAACCCATAATTCTCTCAAATACAGATTTGTACTGACAACTTGTCCATTAAGAAACAATAACGTCATCAAACAAGTTCAAATTTGTTCATAAAATGGTCATATCCAAGTCTTTCTCTTGAATTGCAATAAGAATCATCGTCTTATGCCCTTACTCAGGCCTACTGCTCAATGCCTCTCTATGATCAACTTCATAAGAATCAATCGTCAAATGGTCATGTCCATGCTTCTTATGTTCTTTCCAAGCGATTGAACTGTTTCTTTGTTTTCATTATTATTTTAAATTTAGCTTAGATTTTGAAAATGTTATTTTTAGAGTAACAAAACTAAGAAGTTCATAGATGGGAGTAGTGTTTACAAGCTTAGTTTTCAAAAAGATCGAACACAAAAAACAAAATAGGTATTGAACATGGTGATTTTTGTGTCGGGAATACTCCACCAGTTTCATACTAAAACAAGTGTCACTGTGCTTTGAGTTTCAGGTTATAAAAGCCTCAATCTGTTATCACTCTGCTGAAAAATTGACATGGAGTTAATTGATATACTTCATCCCTGCTGAAGAACACCTAAAATATTTCTGCTTTTTCAGATTGCATGTAAGTTAAGTTACCAAGTTTATTCCTGTTTGCTTGTGCTTTCCCCTGCCAAACCATTCATCATATTTAATGCCTTCTTTGTGGTCTCTCTCTCTGAACCTAAGACACAACGTCCTTAGGTCTTGTGCAATCAAGGCTACCTATTGAGAATTTTGGCTGGAGATAAATATCAGAATCTTTTAAGGATAGATTTAGAAATTGGGCTTAGTTAGTTAGGAGGCATCCGTTTCGTTTTCTAATTCTTTCTTGGTATTCTCTTTCATCTCTTTTGTAACTATGGATTTTTCTAATATAGCAGTTGGAATGGTAACTGTTAGCTTCTTAGTTGGTGGATATTGTTTCCAAAACCCAAAGTTACCTCTAAAGCATCATGTCTCTTAATTTGGAGAAAGACTAAATTGTAGGAAAAGTGCTCGCTTCTTTTCAACCAGGCACTCGCCTCACCTATTTTCCACACTTGAACGGTGCAACAATGGTGAGCTTGGCGAGCACATCAATAGAGATGCTTGCTAAATCACTGTACAATGCAAGAAACATTTGCCCCACTTTGCTGTGCTCCATAGGCACGCACATAAAAGGTTGAGTTGAGTCACACTTATTACAAACTAGACTGGTTTTTTTTGTGAGATCCCACATCGGGTGGAGAGGGGAACAAACTATTTCTAATAAATGTGTGGAAACCTCTCCCTAGTAGACATGTTTTAAAATCGTGAGGTTGACGGCGATACGGACCAAAACGGATAAATGCTAGTAGTAAGTTTGGGTTATTACATTTTTACTCCGTGTGTTCTTATACAGTTCACTTACCAAAATAGTCTTGTTTGTCATCTGAAGGGGTAAAGAAACATGAATCATTTTTGTCTTGATTTCAATTGGGTTTTGTTTCAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCTGTAACTCTAGGGGAAGTATGA

mRNA sequence

GCAAAAGAAGAAGAAGAAGAAGAAGAAGGAAACGTGAGCTCAGTTAACCCGGAAGTATTCGGGTTGAACGGTCGGCTTGGAAGTTTTCTAAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGAAGATTGAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCTGTAACTCTAGGGGAAGTATGA

Coding sequence (CDS)

GCAAAAGAAGAAGAAGAAGAAGAAGAAGGAAACGTGAGCTCAGTTAACCCGGAAGTATTCGGGTTGAACGGTCGGCTTGGAAGTTTTCTAAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGAAGATTGAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCTGTAACTCTAGGGGAAGTATGA

Protein sequence

AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVTVEGQTYTISAVTLGEV

Homology

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BLAST of Carg04460 vs. NCBI nr
Match: KAG7033093.1 (hypothetical protein SDJN02_07146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVT 60
          AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVT
Sbjct: 1  AKEEEEEEEGNVSSVNPEVFGLNGRLGSFLNGKIVTRLNNVGLKVDPGRLRTRNVGEIVT 60

Query: 61 VEGQTYTISAVTLGEV 77
          VEGQTYTISAVTLGEV
Sbjct: 61 VEGQTYTISAVTLGEV 76

The following BLAST results are available for this feature:

BLAST of Carg04460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033093.1	1.0e-31	100.00	hypothetical protein SDJN02_07146, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg04460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04460 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04460-RA	Carg04460-RA	mRNA