Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGGTAATAATATGTCTCGAAATTCAAAAGCTTAAGCTAATAAGTTATAGTATGATATTTGAAGTATTTTGTGACGTAGGGAACTCAAAGTAGCTACGAATTGCATGGCGTGGAAGAGACAAATATTAAGGTGGCAAGCCGCTACTCGGAAGAAGAAAGAAAAGAGAGAATTGTTAGATATTTGAAAAAGAGAAACCAGAGAAATTTCAACAAAACCATTAAGGTTCTAACAATTCTCCTTTTCTCTCTTAATTTATATAAATATATTGTTATTCGGGATTGTTGGGAGAGGAGTCTCATGTTAACTAATTAACGGGTTGGTCATGAGTTTATAAGTAAGAAACACTATCTTAATTAGTAATGAGTCATTTTAGAAAAGCCTAAAGTAAGCCACGAGAGCTTATACTCAAAGTGGACAATATCATATGGAGGTCCGTAATTACTAACATATAGTTCTTAAAATCCTCATGGTTTTTGTATGTTATTTCACAGTATGCATGTCGCAAAACCCTAGCAGACAGGAGAACACGAGTACGAGGAAGATTTGCTCGCAACAACAACGAGCTTTGTGACACTGAAATCCCTCTCAAAACCAACCATTTAACTGCCCCATCTCACAATCAAAAGGTAAAAACCATACAAATTATCCATTTTTCTTGATTCTATGTTTTTTGTTTATAAAGACAAGACCTTTATCATTTTTTGTGTTTTGTTGTGTTTTTTTGGACAGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA
mRNA sequence
ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA
Coding sequence (CDS)
ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA
Protein sequence
MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLDQMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV
Homology
BLAST of Carg03432-RA vs. NCBI nr
Match:
KAG7010436.1 (hypothetical protein SDJN02_27229, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 337.0 bits (863), Expect = 8.6e-89
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD
Sbjct: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
Query: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
Query: 121 PDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV 160
PDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV
Sbjct: 121 PDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV 159
BLAST of Carg03432-RA vs. NCBI nr
Match:
KAG6570585.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75
Identity = 156/252 (61.90%), Postives = 156/252 (61.90%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
MASFPHFYSDLLYPNNFSDLQSLLM AGDP IGGIRNNDDNNNNNINLPRGEETFDPTLD
Sbjct: 1 MASFPHFYSDLLYPNNFSDLQSLLMVAGDPGIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
Query: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
QM SFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61 QMVSFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
Query: 121 PDLKPFYRNIW------------------------------------------------- 160
PDLKPFYRNIW
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180
BLAST of Carg03432-RA vs. NCBI nr
Match:
XP_023511907.1 (zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 150/253 (59.29%), Postives = 155/253 (61.26%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIR-NNDDNNNNNINLPRGEETFDPTL 60
MASFPHFYSDLLYPNNFSDLQ+LLMAAGDP IGGIR NNDDNNNNNI+LPRGEETF P
Sbjct: 1 MASFPHFYSDLLYPNNFSDLQTLLMAAGDPGIGGIRNNNDDNNNNNIDLPRGEETFVPAF 60
Query: 61 DQMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGF 120
D+MASFESDTQSPLLTMPYPDLT+PSSPEFNKGMYGIHSVIGNQP+VPGSCNYDDELLGF
Sbjct: 61 DRMASFESDTQSPLLTMPYPDLTLPSSPEFNKGMYGIHSVIGNQPQVPGSCNYDDELLGF 120
Query: 121 VPDLKPFYRNIW------------------------------------------------ 160
VPDLKPFYRNIW
Sbjct: 121 VPDLKPFYRNIWGPQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIK 180
BLAST of Carg03432-RA vs. NCBI nr
Match:
XP_022943623.1 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 152/252 (60.32%), Postives = 153/252 (60.71%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
MASFPHFYSD LYPNNFSDLQSLLMAAGDP IGGIR NDD+NNNNINLP GEETF TLD
Sbjct: 1 MASFPHFYSDHLYPNNFSDLQSLLMAAGDPGIGGIR-NDDDNNNNINLPHGEETFVSTLD 60
Query: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
Query: 121 PDLKPFYRNIW------------------------------------------------- 160
PDLKPFYRNIW
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180
BLAST of Carg03432-RA vs. NCBI nr
Match:
XP_022986020.1 (uncharacterized protein LOC111483882 [Cucurbita maxima])
HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 144/252 (57.14%), Postives = 149/252 (59.13%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
MASFPHFYSDLLYPNNFSDLQSLLMAAGDPR+GGIRN DNNNNNI+LPRGEETF P+ D
Sbjct: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRVGGIRN--DNNNNNIDLPRGEETFVPSFD 60
Query: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSV +QP P SCNYDDELL FV
Sbjct: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVSDSQP--PASCNYDDELLHFV 120
Query: 121 PDLKPFYRNIW------------------------------------------------- 160
P+LKPFYRNIW
Sbjct: 121 PNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180
BLAST of Carg03432-RA vs. ExPASy TrEMBL
Match:
A0A6J1FX75 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)
HSP 1 Score: 274.2 bits (700), Expect = 3.3e-70
Identity = 152/252 (60.32%), Postives = 153/252 (60.71%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
MASFPHFYSD LYPNNFSDLQSLLMAAGDP IGGIR NDD+NNNNINLP GEETF TLD
Sbjct: 1 MASFPHFYSDHLYPNNFSDLQSLLMAAGDPGIGGIR-NDDDNNNNINLPHGEETFVSTLD 60
Query: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
Query: 121 PDLKPFYRNIW------------------------------------------------- 160
PDLKPFYRNIW
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180
BLAST of Carg03432-RA vs. ExPASy TrEMBL
Match:
A0A6J1JCW3 (uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882 PE=4 SV=1)
HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 144/252 (57.14%), Postives = 149/252 (59.13%), Query Frame = 0
Query: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
MASFPHFYSDLLYPNNFSDLQSLLMAAGDPR+GGIRN DNNNNNI+LPRGEETF P+ D
Sbjct: 1 MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRVGGIRN--DNNNNNIDLPRGEETFVPSFD 60
Query: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSV +QP P SCNYDDELL FV
Sbjct: 61 QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVSDSQP--PASCNYDDELLHFV 120
Query: 121 PDLKPFYRNIW------------------------------------------------- 160
P+LKPFYRNIW
Sbjct: 121 PNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180
BLAST of Carg03432-RA vs. ExPASy TrEMBL
Match:
A0A6J1FUW6 (zinc finger protein CONSTANS-LIKE 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 3.6e-56
Identity = 129/228 (56.58%), Postives = 130/228 (57.02%), Query Frame = 0
Query: 25 MAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLDQMASFESDTQSPLLTMPYPDLTVP 84
MAAGDP IGGIR NDD+NNNNINLP GEETF TLDQMASFESDTQSPLLTMPYPDLTVP
Sbjct: 1 MAAGDPGIGGIR-NDDDNNNNINLPHGEETFVSTLDQMASFESDTQSPLLTMPYPDLTVP 60
Query: 85 SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIW------------- 144
SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIW
Sbjct: 61 SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIWGTQSSYELHGVEE 120
Query: 145 ------------------------------------------------------------ 160
Sbjct: 121 TNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNEL 180
BLAST of Carg03432-RA vs. ExPASy TrEMBL
Match:
A0A1S4E134 (uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 7.5e-38
Identity = 95/152 (62.50%), Postives = 108/152 (71.05%), Query Frame = 0
Query: 1 MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINL-PRGEETFDPT 60
MASFPH FYSD LYPNNFSDLQ+LLMAAGD + GIRNN++NNNNNI+L EETF P
Sbjct: 1 MASFPHNFYSD-LYPNNFSDLQTLLMAAGDSGMCGIRNNNNNNNNNIDLFVSREETFIPF 60
Query: 61 LDQMASFE---SDT-QSPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVP 120
DQ S E SDT SP LTM +PDL TVPS PEFN Y IHS+I QP+VP
Sbjct: 61 FDQTVSPEQSSSDTGLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLISCQPQVP 120
Query: 121 GSCNYDDELLGFVPDLKPFYRNIWNKEEEEES 140
G+CNY DELLGFVP+LKP YR+ W + E+
Sbjct: 121 GTCNYGDELLGFVPELKPLYRDTWGNQSRYET 151
BLAST of Carg03432-RA vs. ExPASy TrEMBL
Match:
A0A0A0KGC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 108/271 (39.85%), Postives = 125/271 (46.13%), Query Frame = 0
Query: 1 MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTL 60
MASFPH FY DL YPNNFSDLQ+LLMAAGD + GIRNN +N+N ++ + R EETF +
Sbjct: 1 MASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSR-EETFVSSF 60
Query: 61 DQMAS---FESDTQ-SPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVPG 120
DQ S SDT SP LTM +PDL TVPS PEFN Y IHS+I QP+VPG
Sbjct: 61 DQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVPG 120
Query: 121 SCNYDDELLGFVPDLKPFYRNIWNKE---------------------------------- 160
+CNY D+L+GFVP+LKP YR+ W +
Sbjct: 121 TCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIVRYLKK 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7010436.1 | 8.6e-89 | 100.00 | hypothetical protein SDJN02_27229, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6570585.1 | 5.4e-75 | 61.90 | Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. soro... | [more] |
XP_023511907.1 | 3.1e-70 | 59.29 | zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022943623.1 | 6.9e-70 | 60.32 | zinc finger protein CONSTANS-LIKE 1-like isoform X1 [Cucurbita moschata] | [more] |
XP_022986020.1 | 2.5e-64 | 57.14 | uncharacterized protein LOC111483882 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FX75 | 3.3e-70 | 60.32 | zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=366... | [more] |
A0A6J1JCW3 | 1.2e-64 | 57.14 | uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882... | [more] |
A0A6J1FUW6 | 3.6e-56 | 56.58 | zinc finger protein CONSTANS-LIKE 1-like isoform X2 OS=Cucurbita moschata OX=366... | [more] |
A0A1S4E134 | 7.5e-38 | 62.50 | uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=... | [more] |
A0A0A0KGC0 | 1.2e-35 | 39.85 | CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |