Carg03432 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03432
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger protein CONSTANS-LIKE 1-like isoform X1
LocationCarg_Chr20: 1365713 .. 1366919 (-)
RNA-Seq ExpressionCarg03432
SyntenyCarg03432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGGTAATAATATGTCTCGAAATTCAAAAGCTTAAGCTAATAAGTTATAGTATGATATTTGAAGTATTTTGTGACGTAGGGAACTCAAAGTAGCTACGAATTGCATGGCGTGGAAGAGACAAATATTAAGGTGGCAAGCCGCTACTCGGAAGAAGAAAGAAAAGAGAGAATTGTTAGATATTTGAAAAAGAGAAACCAGAGAAATTTCAACAAAACCATTAAGGTTCTAACAATTCTCCTTTTCTCTCTTAATTTATATAAATATATTGTTATTCGGGATTGTTGGGAGAGGAGTCTCATGTTAACTAATTAACGGGTTGGTCATGAGTTTATAAGTAAGAAACACTATCTTAATTAGTAATGAGTCATTTTAGAAAAGCCTAAAGTAAGCCACGAGAGCTTATACTCAAAGTGGACAATATCATATGGAGGTCCGTAATTACTAACATATAGTTCTTAAAATCCTCATGGTTTTTGTATGTTATTTCACAGTATGCATGTCGCAAAACCCTAGCAGACAGGAGAACACGAGTACGAGGAAGATTTGCTCGCAACAACAACGAGCTTTGTGACACTGAAATCCCTCTCAAAACCAACCATTTAACTGCCCCATCTCACAATCAAAAGGTAAAAACCATACAAATTATCCATTTTTCTTGATTCTATGTTTTTTGTTTATAAAGACAAGACCTTTATCATTTTTTGTGTTTTGTTGTGTTTTTTTGGACAGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA

mRNA sequence

ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA

Coding sequence (CDS)

ATGGCTTCATTTCCTCACTTCTACTCCGACCTTCTTTATCCCAACAACTTTTCGGACCTTCAGAGCCTATTAATGGCGGCTGGAGACCCCAGGATCGGTGGTATTAGAAACAACGACGACAACAACAACAATAATATTAACTTGCCTCGTGGGGAAGAAACCTTTGATCCTACCTTAGATCAGATGGCGTCGTTTGAGTCCGATACCCAATCGCCGCTCCTAACAATGCCGTATCCCGACCTGACTGTTCCATCATCGCCCGAGTTTAACAAGGGTATGTATGGCATCCATAGCGTAATCGGCAACCAGCCACGTGTGCCCGGCTCGTGCAATTACGATGACGAACTCTTAGGCTTTGTGCCTGATTTGAAGCCCTTTTATCGCAACATCTGGAATAAGGAAGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTATGGAGTGTAA

Protein sequence

MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLDQMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV
Homology
BLAST of Carg03432 vs. NCBI nr
Match: KAG7010436.1 (hypothetical protein SDJN02_27229, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.0 bits (863), Expect = 8.6e-89
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
           MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120

Query: 121 PDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV 160
           PDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV
Sbjct: 121 PDLKPFYRNIWNKEEEEESWLQELAASLMYLPYVTNYGV 159

BLAST of Carg03432 vs. NCBI nr
Match: KAG6570585.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75
Identity = 156/252 (61.90%), Postives = 156/252 (61.90%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
           MASFPHFYSDLLYPNNFSDLQSLLM AGDP IGGIRNNDDNNNNNINLPRGEETFDPTLD
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQSLLMVAGDPGIGGIRNNDDNNNNNINLPRGEETFDPTLD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QM SFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61  QMVSFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           PDLKPFYRNIW                                                 
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

BLAST of Carg03432 vs. NCBI nr
Match: XP_023511907.1 (zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 150/253 (59.29%), Postives = 155/253 (61.26%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIR-NNDDNNNNNINLPRGEETFDPTL 60
           MASFPHFYSDLLYPNNFSDLQ+LLMAAGDP IGGIR NNDDNNNNNI+LPRGEETF P  
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQTLLMAAGDPGIGGIRNNNDDNNNNNIDLPRGEETFVPAF 60

Query: 61  DQMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGF 120
           D+MASFESDTQSPLLTMPYPDLT+PSSPEFNKGMYGIHSVIGNQP+VPGSCNYDDELLGF
Sbjct: 61  DRMASFESDTQSPLLTMPYPDLTLPSSPEFNKGMYGIHSVIGNQPQVPGSCNYDDELLGF 120

Query: 121 VPDLKPFYRNIW------------------------------------------------ 160
           VPDLKPFYRNIW                                                
Sbjct: 121 VPDLKPFYRNIWGPQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIK 180

BLAST of Carg03432 vs. NCBI nr
Match: XP_022943623.1 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 152/252 (60.32%), Postives = 153/252 (60.71%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
           MASFPHFYSD LYPNNFSDLQSLLMAAGDP IGGIR NDD+NNNNINLP GEETF  TLD
Sbjct: 1   MASFPHFYSDHLYPNNFSDLQSLLMAAGDPGIGGIR-NDDDNNNNINLPHGEETFVSTLD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           PDLKPFYRNIW                                                 
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

BLAST of Carg03432 vs. NCBI nr
Match: XP_022986020.1 (uncharacterized protein LOC111483882 [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 144/252 (57.14%), Postives = 149/252 (59.13%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
           MASFPHFYSDLLYPNNFSDLQSLLMAAGDPR+GGIRN  DNNNNNI+LPRGEETF P+ D
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRVGGIRN--DNNNNNIDLPRGEETFVPSFD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSV  +QP  P SCNYDDELL FV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVSDSQP--PASCNYDDELLHFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           P+LKPFYRNIW                                                 
Sbjct: 121 PNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

BLAST of Carg03432 vs. ExPASy TrEMBL
Match: A0A6J1FX75 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.3e-70
Identity = 152/252 (60.32%), Postives = 153/252 (60.71%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
           MASFPHFYSD LYPNNFSDLQSLLMAAGDP IGGIR NDD+NNNNINLP GEETF  TLD
Sbjct: 1   MASFPHFYSDHLYPNNFSDLQSLLMAAGDPGIGGIR-NDDDNNNNINLPHGEETFVSTLD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           PDLKPFYRNIW                                                 
Sbjct: 121 PDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

BLAST of Carg03432 vs. ExPASy TrEMBL
Match: A0A6J1JCW3 (uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 144/252 (57.14%), Postives = 149/252 (59.13%), Query Frame = 0

Query: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLD 60
           MASFPHFYSDLLYPNNFSDLQSLLMAAGDPR+GGIRN  DNNNNNI+LPRGEETF P+ D
Sbjct: 1   MASFPHFYSDLLYPNNFSDLQSLLMAAGDPRVGGIRN--DNNNNNIDLPRGEETFVPSFD 60

Query: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFV 120
           QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSV  +QP  P SCNYDDELL FV
Sbjct: 61  QMASFESDTQSPLLTMPYPDLTVPSSPEFNKGMYGIHSVSDSQP--PASCNYDDELLHFV 120

Query: 121 PDLKPFYRNIW------------------------------------------------- 160
           P+LKPFYRNIW                                                 
Sbjct: 121 PNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKY 180

BLAST of Carg03432 vs. ExPASy TrEMBL
Match: A0A6J1FUW6 (zinc finger protein CONSTANS-LIKE 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.6e-56
Identity = 129/228 (56.58%), Postives = 130/228 (57.02%), Query Frame = 0

Query: 25  MAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTLDQMASFESDTQSPLLTMPYPDLTVP 84
           MAAGDP IGGIR NDD+NNNNINLP GEETF  TLDQMASFESDTQSPLLTMPYPDLTVP
Sbjct: 1   MAAGDPGIGGIR-NDDDNNNNINLPHGEETFVSTLDQMASFESDTQSPLLTMPYPDLTVP 60

Query: 85  SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIW------------- 144
           SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIW             
Sbjct: 61  SSPEFNKGMYGIHSVIGNQPRVPGSCNYDDELLGFVPDLKPFYRNIWGTQSSYELHGVEE 120

Query: 145 ------------------------------------------------------------ 160
                                                                       
Sbjct: 121 TNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNEL 180

BLAST of Carg03432 vs. ExPASy TrEMBL
Match: A0A1S4E134 (uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.5e-38
Identity = 95/152 (62.50%), Postives = 108/152 (71.05%), Query Frame = 0

Query: 1   MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINL-PRGEETFDPT 60
           MASFPH FYSD LYPNNFSDLQ+LLMAAGD  + GIRNN++NNNNNI+L    EETF P 
Sbjct: 1   MASFPHNFYSD-LYPNNFSDLQTLLMAAGDSGMCGIRNNNNNNNNNIDLFVSREETFIPF 60

Query: 61  LDQMASFE---SDT-QSPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVP 120
            DQ  S E   SDT  SP LTM +PDL       TVPS PEFN   Y IHS+I  QP+VP
Sbjct: 61  FDQTVSPEQSSSDTGLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLISCQPQVP 120

Query: 121 GSCNYDDELLGFVPDLKPFYRNIWNKEEEEES 140
           G+CNY DELLGFVP+LKP YR+ W  +   E+
Sbjct: 121 GTCNYGDELLGFVPELKPLYRDTWGNQSRYET 151

BLAST of Carg03432 vs. ExPASy TrEMBL
Match: A0A0A0KGC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 108/271 (39.85%), Postives = 125/271 (46.13%), Query Frame = 0

Query: 1   MASFPH-FYSDLLYPNNFSDLQSLLMAAGDPRIGGIRNNDDNNNNNINLPRGEETFDPTL 60
           MASFPH FY DL YPNNFSDLQ+LLMAAGD  + GIRNN +N+N ++ + R EETF  + 
Sbjct: 1   MASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSR-EETFVSSF 60

Query: 61  DQMAS---FESDTQ-SPLLTMPYPDL-------TVPSSPEFNKGMYGIHSVIGNQPRVPG 120
           DQ  S     SDT  SP LTM +PDL       TVPS PEFN   Y IHS+I  QP+VPG
Sbjct: 61  DQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVPG 120

Query: 121 SCNYDDELLGFVPDLKPFYRNIWNKE---------------------------------- 160
           +CNY D+L+GFVP+LKP YR+ W  +                                  
Sbjct: 121 TCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIVRYLKK 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7010436.18.6e-89100.00hypothetical protein SDJN02_27229, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570585.15.4e-7561.90Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_023511907.13.1e-7059.29zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo][more]
XP_022943623.16.9e-7060.32zinc finger protein CONSTANS-LIKE 1-like isoform X1 [Cucurbita moschata][more]
XP_022986020.12.5e-6457.14uncharacterized protein LOC111483882 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FX753.3e-7060.32zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=366... [more]
A0A6J1JCW31.2e-6457.14uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882... [more]
A0A6J1FUW63.6e-5656.58zinc finger protein CONSTANS-LIKE 1-like isoform X2 OS=Cucurbita moschata OX=366... [more]
A0A1S4E1347.5e-3862.50uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=... [more]
A0A0A0KGC01.2e-3539.85CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03432-RACarg03432-RAmRNA