Carg02459-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02459-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description3-isopropylmalate dehydratase small subunit 3-like
LocationCarg_Chr02: 8615709 .. 8616482 (-)
Sequence length774
RNA-Seq ExpressionCarg02459-RA
SyntenyCarg02459-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTTCACTGTATCTATCTCAAAGCCCTATCGCCACTGCCACCCGTCGATCTTCACCCTTCATTTCCCTTCTCCCTCCTCAATCCATCAAATTCCCCTCTTTCCACTGCCATACCCTCAAAGATCTTTCAATCACCGCCTCCCACGCGTCGCAGCGTGCTGCAACCATCATCCCGCGAGCAGCCGCCACACCGTCATCCGCCGCTTCTTCAACCACCGTATTTCACGGCAGCTGCTATGTCGTCGGAGACAACATCGACACTGACCAGATTATTCCGGCTGAGTATCTTACTTTGGTCCCCTCAAATCCTAGCGAGTATGAGAAGCTCGGATCCTACGCCCTAATTGGCCTTCCTTCCTCTTATTCCACCCGCTTCGTGGAACCTAACGAGATGAAAACCAAATATTCCATCATAATTGCCGGCGACAACTTCGGCTGCGGTTCTTCACGGGAGCACGCGCCGGTTGCGTTGGGAGCGTCCGGTGCGGTGGCTGTGGTTGCTGAGTCGTACGCCCGTATTTTCTTCCGGAACTCGGTGTCGACCGGAGAGATTTATCCATTGGAATCGGAAATAAGGATCTGCGATGAATGTAAGACTGGCGATGTGTTGACAATCGAGCTGGCAGAAAGCCGCTTGATCAACCACACGACGGGAAAAGAATACAAGCTCAAGCCTATTGGGGATGCAGGTCCTGTCATTGAGGCTGGTGGGATTTTCGCATATGCTAGGAAATCTGGTATGATTCCAAGCCTAACGCCGTCAAGTTGA

mRNA sequence

ATGGCGGCTTCACTGTATCTATCTCAAAGCCCTATCGCCACTGCCACCCGTCGATCTTCACCCTTCATTTCCCTTCTCCCTCCTCAATCCATCAAATTCCCCTCTTTCCACTGCCATACCCTCAAAGATCTTTCAATCACCGCCTCCCACGCGTCGCAGCGTGCTGCAACCATCATCCCGCGAGCAGCCGCCACACCGTCATCCGCCGCTTCTTCAACCACCGTATTTCACGGCAGCTGCTATGTCGTCGGAGACAACATCGACACTGACCAGATTATTCCGGCTGAGTATCTTACTTTGGTCCCCTCAAATCCTAGCGAGTATGAGAAGCTCGGATCCTACGCCCTAATTGGCCTTCCTTCCTCTTATTCCACCCGCTTCGTGGAACCTAACGAGATGAAAACCAAATATTCCATCATAATTGCCGGCGACAACTTCGGCTGCGGTTCTTCACGGGAGCACGCGCCGGTTGCGTTGGGAGCGTCCGGTGCGGTGGCTGTGGTTGCTGAGTCGTACGCCCGTATTTTCTTCCGGAACTCGGTGTCGACCGGAGAGATTTATCCATTGGAATCGGAAATAAGGATCTGCGATGAATGTAAGACTGGCGATGTGTTGACAATCGAGCTGGCAGAAAGCCGCTTGATCAACCACACGACGGGAAAAGAATACAAGCTCAAGCCTATTGGGGATGCAGGTCCTGTCATTGAGGCTGGTGGGATTTTCGCATATGCTAGGAAATCTGGTATGATTCCAAGCCTAACGCCGTCAAGTTGA

Coding sequence (CDS)

ATGGCGGCTTCACTGTATCTATCTCAAAGCCCTATCGCCACTGCCACCCGTCGATCTTCACCCTTCATTTCCCTTCTCCCTCCTCAATCCATCAAATTCCCCTCTTTCCACTGCCATACCCTCAAAGATCTTTCAATCACCGCCTCCCACGCGTCGCAGCGTGCTGCAACCATCATCCCGCGAGCAGCCGCCACACCGTCATCCGCCGCTTCTTCAACCACCGTATTTCACGGCAGCTGCTATGTCGTCGGAGACAACATCGACACTGACCAGATTATTCCGGCTGAGTATCTTACTTTGGTCCCCTCAAATCCTAGCGAGTATGAGAAGCTCGGATCCTACGCCCTAATTGGCCTTCCTTCCTCTTATTCCACCCGCTTCGTGGAACCTAACGAGATGAAAACCAAATATTCCATCATAATTGCCGGCGACAACTTCGGCTGCGGTTCTTCACGGGAGCACGCGCCGGTTGCGTTGGGAGCGTCCGGTGCGGTGGCTGTGGTTGCTGAGTCGTACGCCCGTATTTTCTTCCGGAACTCGGTGTCGACCGGAGAGATTTATCCATTGGAATCGGAAATAAGGATCTGCGATGAATGTAAGACTGGCGATGTGTTGACAATCGAGCTGGCAGAAAGCCGCTTGATCAACCACACGACGGGAAAAGAATACAAGCTCAAGCCTATTGGGGATGCAGGTCCTGTCATTGAGGCTGGTGGGATTTTCGCATATGCTAGGAAATCTGGTATGATTCCAAGCCTAACGCCGTCAAGTTGA

Protein sequence

MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIPRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKSGMIPSLTPSS
Homology
[Close]
BLAST of Carg02459-RA vs. NCBI nr
Match: KAG7036111.1 (3-isopropylmalate dehydratase small subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 500.4 bits (1287), Expect = 9.5e-138
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP
Sbjct: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60

Query: 61  RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 120
           RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP
Sbjct: 61  RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 120

Query: 121 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 180
           SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS
Sbjct: 121 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 180

Query: 181 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 240
           VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI
Sbjct: 181 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 240

Query: 241 FAYARKSGMIPSLTPSS 258
           FAYARKSGMIPSLTPSS
Sbjct: 241 FAYARKSGMIPSLTPSS 257

[Close]
BLAST of Carg02459-RA vs. NCBI nr
Match: XP_022957929.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita moschata] >KAG6606167.1 3-isopropylmalate dehydratase small subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 500.4 bits (1287), Expect = 9.5e-138
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 62

Query: 61  RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 120
           RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP
Sbjct: 63  RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 122

Query: 121 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 180
           SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS
Sbjct: 123 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 182

Query: 181 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 240
           VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI
Sbjct: 183 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 242

Query: 241 FAYARKSGMIPSLTPSS 258
           FAYARKSGMIPSLTPSS
Sbjct: 243 FAYARKSGMIPSLTPSS 259

[Close]
BLAST of Carg02459-RA vs. NCBI nr
Match: XP_023521482.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023533844.1 3-isopropylmalate dehydratase small subunit 3-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533845.1 3-isopropylmalate dehydratase small subunit 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 493.4 bits (1269), Expect = 1.2e-135
Identity = 256/258 (99.22%), Postives = 256/258 (99.22%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPP-QSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASLYLSQSPIATATRRSSPFISLLPP QSIKFPS HCHTLKDLSITASHASQRAATII
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLLPPSQSIKFPSLHCHTLKDLSITASHASQRAATII 62

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 63  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 122

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 123 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 182

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 183 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 242

Query: 241 IFAYARKSGMIPSLTPSS 258
           IFAYARKSGMIPSLTPSS
Sbjct: 243 IFAYARKSGMIPSLTPSS 260

[Close]
BLAST of Carg02459-RA vs. NCBI nr
Match: XP_022996177.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima])

HSP 1 Score: 492.7 bits (1267), Expect = 2.0e-135
Identity = 255/258 (98.84%), Postives = 256/258 (99.22%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPP-QSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASLYLSQSPIATATRRSSPFISL+PP QSIKFPS HCHTLKDLSITASHASQRAATII
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLIPPSQSIKFPSLHCHTLKDLSITASHASQRAATII 62

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 63  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 122

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 123 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 182

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 183 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 242

Query: 241 IFAYARKSGMIPSLTPSS 258
           IFAYARKSGMIPSLTPSS
Sbjct: 243 IFAYARKSGMIPSLTPSS 260

[Close]
BLAST of Carg02459-RA vs. NCBI nr
Match: XP_038876127.1 (3-isopropylmalate dehydratase small subunit 1-like [Benincasa hispida])

HSP 1 Score: 423.3 bits (1087), Expect = 1.5e-114
Identity = 222/253 (87.75%), Postives = 230/253 (90.91%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLL-PPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASL+LSQSPIAT T RSSP IS L  PQ+IKFPS H   L DLSI  SHA  RAATII
Sbjct: 34  MAASLFLSQSPIATPTPRSSPSISFLSSPQTIKFPSPHSSFLFDLSIAVSHAPPRAATII 93

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA A+PSS A STT FHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 94  PRATASPSSTAPSTTAFHGRCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 153

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE +EMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 154 PSSYSTRFVESDEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 213

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESE RICDECKTGDV+TIEL +SRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 214 SVATGEIYPLESETRICDECKTGDVVTIELGKSRLINHTTGKEYKLKPIGDAGPVIEAGG 273

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMIPS
Sbjct: 274 IFAYARKTGMIPS 286

[Close]
BLAST of Carg02459-RA vs. ExPASy Swiss-Prot
Match: Q9ZW85 (3-isopropylmalate dehydratase small subunit 1 OS=Arabidopsis thaliana OX=3702 GN=SSU1 PE=1 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.3e-84
Identity = 168/260 (64.62%), Postives = 198/260 (76.15%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASH------ASQR 60
           MAASL  S +P  + T  S       P +   F +F    L+  S + +       + + 
Sbjct: 1   MAASLQ-SANPTLSRTLAS-------PNKPSSFATFRSPFLRFNSTSVASNFKPLVSREA 60

Query: 61  AATIIPRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSY 120
           +++ + R+AA P    +    FHG CYVVGDNIDTDQIIPAE+LTLVPSNP EYEKLGSY
Sbjct: 61  SSSFVTRSAAEPQERKT----FHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 120

Query: 121 ALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYAR 180
           AL+GLP+SY  RFV+P EMKTKYSIII G+NFGCGSSREHAPV LGA+GA AVVA+SYAR
Sbjct: 121 ALVGLPASYKERFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYAR 180

Query: 181 IFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE--SRLINHTTGKEYKLKPIGDAG 240
           IFFRNSV+TGE+YPL+SE+R+CDEC TGDV T+EL E  S LINHTTGKEYKLKPIGDAG
Sbjct: 181 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 240

Query: 241 PVIEAGGIFAYARKSGMIPS 253
           PVI+AGGIFAYARK+GMIPS
Sbjct: 241 PVIDAGGIFAYARKAGMIPS 248

[Close]
BLAST of Carg02459-RA vs. ExPASy Swiss-Prot
Match: Q9LYT7 (3-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana OX=3702 GN=SSU3 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-78
Identity = 151/203 (74.38%), Postives = 170/203 (83.74%), Query Frame = 0 

Query: 55  AATIIPRAAATPSSAASSTT--VFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLG 114
           +ATII R AA+ S +  S T   FHG C+V+ DNIDTDQIIPAEY TL+PS P + EKLG
Sbjct: 50  SATIITRVAASSSDSGESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLG 109

Query: 115 SYALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESY 174
           S+AL GLP  Y+ RFV P EMK+KYS+II GDNFGCGSSREHAPV LGA+GA AVVAESY
Sbjct: 110 SFALNGLPKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESY 169

Query: 175 ARIFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE---SRLINHTTGKEYKLKPIG 234
           ARIFFRN V+TGEI+PLESE+RICDECKTGDV+TIE  E   S LINHTT KEYKLKP+G
Sbjct: 170 ARIFFRNCVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLG 229

Query: 235 DAGPVIEAGGIFAYARKSGMIPS 253
           DAGPVI+AGGIFAYARK+GMIPS
Sbjct: 230 DAGPVIDAGGIFAYARKAGMIPS 252

[Close]
BLAST of Carg02459-RA vs. ExPASy Swiss-Prot
Match: Q9ZW84 (3-isopropylmalate dehydratase small subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SSU2 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-72
Identity = 148/257 (57.59%), Postives = 186/257 (72.37%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MA SL      +  ++ ++S  ++      ++F          +SIT+   S  + TIIP
Sbjct: 1   MAYSLPTFPQALPCSSTKTSSSLATFRSPFLRFNGSTSLIPSSISITSRGTS--SPTIIP 60

Query: 61  RAAATPSSA--ASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIG 120
           RAAA+ S +  A + T FHG CYV+ DNIDTDQIIPA      PSN  E +++ ++AL G
Sbjct: 61  RAAASESDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSG 120

Query: 121 LPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFR 180
           LP  + TRF+EP E ++KYSIII G+NFGCGSSREHAPV LGA+GA A+VAESYARIFFR
Sbjct: 121 LPDFHKTRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFR 180

Query: 181 NSVSTGEIYPLESEIRICDECKTGDVLTIELAES--RLINHTTGKEYKLKPIGDAGPVIE 240
           NSV+TGE++PLESE+R+C+ECKTGD +TIEL++S   L NHTTGK YKLK IGDAGPVI+
Sbjct: 181 NSVATGEVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVID 240

Query: 241 AGGIFAYARKSGMIPSL 254
           AGGIFAYAR  GMIPSL
Sbjct: 241 AGGIFAYARMMGMIPSL 255

[Close]
BLAST of Carg02459-RA vs. ExPASy Swiss-Prot
Match: B5YHE5 (3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=leuD PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 75/170 (44.12%), Postives = 105/170 (61.76%), Query Frame = 0 

Query: 78  GSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEPNEMKTKY 137
           G  +  GDNIDTD IIPA YL     N S+ ++L  + +    SS+ ++ V+P +     
Sbjct: 5   GKVWKFGDNIDTDAIIPARYL-----NTSDPKELAKHVMEDADSSFPSK-VKPGD----- 64

Query: 138 SIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLESEIRICD 197
            IIIAG NFGCGSSREHAP+A+ ASG  AV+A+SYARIFFRN+ + G   P+     + D
Sbjct: 65  -IIIAGRNFGCGSSREHAPIAIKASGIRAVIAKSYARIFFRNAFNIG--LPIFEVPELID 124

Query: 198 ECKTGDVLTIELAESRLINHTTGKEYKLKPIGD-AGPVIEAGGIFAYARK 247
           E   GD + I++   ++IN T GK+Y  KPI      +I+AGG+  + +K
Sbjct: 125 ETNEGDEVEIDMNSGQIINLTKGKKYNTKPIPPFMQELIKAGGLVEWTKK 160

[Close]
BLAST of Carg02459-RA vs. ExPASy Swiss-Prot
Match: Q9WZ25 (3-isopropylmalate dehydratase small subunit 2 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=leuD2 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-27
Identity = 71/170 (41.76%), Postives = 104/170 (61.18%), Query Frame = 0 

Query: 78  GSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEPNEMKTKY 137
           G  +V GDN++TD+IIPA YL     N S+ ++L  Y +      +  R         K 
Sbjct: 7   GKVFVFGDNVNTDEIIPARYL-----NTSDPQELAKYCMEDARPGFGRR------DDIKG 66

Query: 138 SIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLESEIRICD 197
           SII+AG+NFGCGSSREHAPVA+ A+G   V+A+S+ARIFFRN+++ G   P+  E++  D
Sbjct: 67  SIIVAGENFGCGSSREHAPVAIKAAGISCVIAKSFARIFFRNAINIG--LPI-VELKEAD 126

Query: 198 ECKTGDVLTIELAESRLINHTTGKEYKLKPIGD-AGPVIEAGGIFAYARK 247
           E + GD+  ++L    + N T GKEY+++P  +    ++EAGG   Y  K
Sbjct: 127 EFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLMKIMEAGGWLEYCLK 162

[Close]
BLAST of Carg02459-RA vs. ExPASy TrEMBL
Match: A0A6J1H3H6 (3-isopropylmalate dehydratase small subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111459316 PE=4 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 4.6e-138
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 62

Query: 61  RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 120
           RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP
Sbjct: 63  RAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 122

Query: 121 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 180
           SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS
Sbjct: 123 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 182

Query: 181 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 240
           VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI
Sbjct: 183 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 242

Query: 241 FAYARKSGMIPSLTPSS 258
           FAYARKSGMIPSLTPSS
Sbjct: 243 FAYARKSGMIPSLTPSS 259

[Close]
BLAST of Carg02459-RA vs. ExPASy TrEMBL
Match: A0A6J1K176 (3-isopropylmalate dehydratase small subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111491484 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.6e-136
Identity = 255/258 (98.84%), Postives = 256/258 (99.22%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPP-QSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASLYLSQSPIATATRRSSPFISL+PP QSIKFPS HCHTLKDLSITASHASQRAATII
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLIPPSQSIKFPSLHCHTLKDLSITASHASQRAATII 62

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 63  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 122

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 123 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 182

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 183 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 242

Query: 241 IFAYARKSGMIPSLTPSS 258
           IFAYARKSGMIPSLTPSS
Sbjct: 243 IFAYARKSGMIPSLTPSS 260

[Close]
BLAST of Carg02459-RA vs. ExPASy TrEMBL
Match: A0A5A7T900 (3-isopropylmalate dehydratase small subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00620 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.0e-113
Identity = 217/253 (85.77%), Postives = 232/253 (91.70%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLL-PPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASL+LS+SPIA +T RSSP +SLL  PQ++KFPS + ++L DLSI  SHA+ R ATII
Sbjct: 1   MAASLFLSRSPIAISTPRSSPSVSLLSSPQTLKFPSSYSNSLFDLSIAVSHATPRLATII 60

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA A+PSS A S T FHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 61  PRATASPSSTAPSATAFHGRCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE +EMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRFVESDEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESE RICDECKTGDV+TIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 181 SVATGEIYPLESETRICDECKTGDVVTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMI S
Sbjct: 241 IFAYARKTGMISS 253

[Close]
BLAST of Carg02459-RA vs. ExPASy TrEMBL
Match: A0A1S3AT32 (3-isopropylmalate dehydratase small subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103482595 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.0e-113
Identity = 217/253 (85.77%), Postives = 232/253 (91.70%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLL-PPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASL+LS+SPIA +T RSSP +SLL  PQ++KFPS + ++L DLSI  SHA+ R ATII
Sbjct: 1   MAASLFLSRSPIAISTPRSSPSVSLLSSPQTLKFPSSYSNSLFDLSIAVSHATPRLATII 60

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA A+PSS A S T FHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 61  PRATASPSSTAPSATAFHGRCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE +EMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRFVESDEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESE RICDECKTGDV+TIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 181 SVATGEIYPLESETRICDECKTGDVVTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMI S
Sbjct: 241 IFAYARKTGMISS 253

[Close]
BLAST of Carg02459-RA vs. ExPASy TrEMBL
Match: A0A6J1ID74 (3-isopropylmalate dehydratase small subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111471515 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.9e-112
Identity = 213/253 (84.19%), Postives = 231/253 (91.30%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFIS-LLPPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MA + ++S SP AT+T RSSP IS L PP++IKFP+F+ + L DLS T SHA  RAA I+
Sbjct: 1   MATAAFVSVSPFATSTPRSSPSISHLSPPRTIKFPTFYSNFLNDLSTTVSHAPSRAAIIL 60

Query: 61  PRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA ATPS A SS+TVFHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGS+AL+GL
Sbjct: 61  PRATATPSYAVSSSTVFHGFCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSHALVGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE NEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRFVESNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESEIRICDECKTGDV+TIELA+SRLINHT GKEYKLKPIGDAGPVI+AGG
Sbjct: 181 SVATGEIYPLESEIRICDECKTGDVVTIELADSRLINHTRGKEYKLKPIGDAGPVIQAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMIPS
Sbjct: 241 IFAYARKTGMIPS 253

[Close]
BLAST of Carg02459-RA vs. TAIR 10
Match: AT2G43090.1 (Aconitase/3-isopropylmalate dehydratase protein )

HSP 1 Score: 312.0 bits (798), Expect = 4.5e-85
Identity = 168/260 (64.62%), Postives = 198/260 (76.15%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASH------ASQR 60
           MAASL  S +P  + T  S       P +   F +F    L+  S + +       + + 
Sbjct: 1   MAASLQ-SANPTLSRTLAS-------PNKPSSFATFRSPFLRFNSTSVASNFKPLVSREA 60

Query: 61  AATIIPRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSY 120
           +++ + R+AA P    +    FHG CYVVGDNIDTDQIIPAE+LTLVPSNP EYEKLGSY
Sbjct: 61  SSSFVTRSAAEPQERKT----FHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 120

Query: 121 ALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYAR 180
           AL+GLP+SY  RFV+P EMKTKYSIII G+NFGCGSSREHAPV LGA+GA AVVA+SYAR
Sbjct: 121 ALVGLPASYKERFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYAR 180

Query: 181 IFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE--SRLINHTTGKEYKLKPIGDAG 240
           IFFRNSV+TGE+YPL+SE+R+CDEC TGDV T+EL E  S LINHTTGKEYKLKPIGDAG
Sbjct: 181 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 240

Query: 241 PVIEAGGIFAYARKSGMIPS 253
           PVI+AGGIFAYARK+GMIPS
Sbjct: 241 PVIDAGGIFAYARKAGMIPS 248

[Close]
BLAST of Carg02459-RA vs. TAIR 10
Match: AT3G58990.1 (isopropylmalate isomerase 1 )

HSP 1 Score: 293.9 bits (751), Expect = 1.3e-79
Identity = 151/203 (74.38%), Postives = 170/203 (83.74%), Query Frame = 0 

Query: 55  AATIIPRAAATPSSAASSTT--VFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLG 114
           +ATII R AA+ S +  S T   FHG C+V+ DNIDTDQIIPAEY TL+PS P + EKLG
Sbjct: 50  SATIITRVAASSSDSGESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLG 109

Query: 115 SYALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESY 174
           S+AL GLP  Y+ RFV P EMK+KYS+II GDNFGCGSSREHAPV LGA+GA AVVAESY
Sbjct: 110 SFALNGLPKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESY 169

Query: 175 ARIFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE---SRLINHTTGKEYKLKPIG 234
           ARIFFRN V+TGEI+PLESE+RICDECKTGDV+TIE  E   S LINHTT KEYKLKP+G
Sbjct: 170 ARIFFRNCVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLG 229

Query: 235 DAGPVIEAGGIFAYARKSGMIPS 253
           DAGPVI+AGGIFAYARK+GMIPS
Sbjct: 230 DAGPVIDAGGIFAYARKAGMIPS 252

[Close]
BLAST of Carg02459-RA vs. TAIR 10
Match: AT2G43100.1 (isopropylmalate isomerase 2 )

HSP 1 Score: 274.2 bits (700), Expect = 1.0e-73
Identity = 148/257 (57.59%), Postives = 186/257 (72.37%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MA SL      +  ++ ++S  ++      ++F          +SIT+   S  + TIIP
Sbjct: 1   MAYSLPTFPQALPCSSTKTSSSLATFRSPFLRFNGSTSLIPSSISITSRGTS--SPTIIP 60

Query: 61  RAAATPSSA--ASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIG 120
           RAAA+ S +  A + T FHG CYV+ DNIDTDQIIPA      PSN  E +++ ++AL G
Sbjct: 61  RAAASESDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSG 120

Query: 121 LPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFR 180
           LP  + TRF+EP E ++KYSIII G+NFGCGSSREHAPV LGA+GA A+VAESYARIFFR
Sbjct: 121 LPDFHKTRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFR 180

Query: 181 NSVSTGEIYPLESEIRICDECKTGDVLTIELAES--RLINHTTGKEYKLKPIGDAGPVIE 240
           NSV+TGE++PLESE+R+C+ECKTGD +TIEL++S   L NHTTGK YKLK IGDAGPVI+
Sbjct: 181 NSVATGEVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVID 240

Query: 241 AGGIFAYARKSGMIPSL 254
           AGGIFAYAR  GMIPSL
Sbjct: 241 AGGIFAYARMMGMIPSL 255

[Close]
BLAST of Carg02459-RA vs. TAIR 10
Match: AT2G43090.2 (Aconitase/3-isopropylmalate dehydratase protein )

HSP 1 Score: 244.6 bits (623), Expect = 8.8e-65
Identity = 143/260 (55.00%), Postives = 172/260 (66.15%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASH------ASQR 60
           MAASL  S +P  + T  S       P +   F +F    L+  S + +       + + 
Sbjct: 1   MAASLQ-SANPTLSRTLAS-------PNKPSSFATFRSPFLRFNSTSVASNFKPLVSREA 60

Query: 61  AATIIPRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSY 120
           +++ + R+AA P    +    FHG CYVVGDNIDTDQIIPAE+LTLVPSNP EYEKLGSY
Sbjct: 61  SSSFVTRSAAEPQERKT----FHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 120

Query: 121 ALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYAR 180
           AL+GLP+SY  RFV+P                             GA+GA AVVA+SYAR
Sbjct: 121 ALVGLPASYKERFVQP-----------------------------GAAGAKAVVAQSYAR 180

Query: 181 IFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE--SRLINHTTGKEYKLKPIGDAG 240
           IFFRNSV+TGE+YPL+SE+R+CDEC TGDV T+EL E  S LINHTTGKEYKLKPIGDAG
Sbjct: 181 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 219

Query: 241 PVIEAGGIFAYARKSGMIPS 253
           PVI+AGGIFAYARK+GMIPS
Sbjct: 241 PVIDAGGIFAYARKAGMIPS 219

The following BLAST results are available for this feature:
BLAST of Carg02459-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036111.19.5e-138100.003-isopropylmalate dehydratase small subunit 3, partial [Cucurbita argyrosperma s... [more]
XP_022957929.19.5e-138100.003-isopropylmalate dehydratase small subunit 3-like [Cucurbita moschata] >KAG6606... [more]
XP_023521482.11.2e-13599.223-isopropylmalate dehydratase small subunit 3-like [Cucurbita pepo subsp. pepo] ... [more]
XP_022996177.12.0e-13598.843-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima][more]
XP_038876127.11.5e-11487.753-isopropylmalate dehydratase small subunit 1-like [Benincasa hispida][more]
BLAST of Carg02459-RA vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZW856.3e-8464.623-isopropylmalate dehydratase small subunit 1 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LYT71.8e-7874.383-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9ZW841.5e-7257.593-isopropylmalate dehydratase small subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
B5YHE54.9e-2844.123-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii ... [more]
Q9WZ252.4e-2741.763-isopropylmalate dehydratase small subunit 2 OS=Thermotoga maritima (strain ATC... [more]
BLAST of Carg02459-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H3H64.6e-138100.003-isopropylmalate dehydratase small subunit 3-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1K1769.6e-13698.843-isopropylmalate dehydratase small subunit 3-like OS=Cucurbita maxima OX=3661 G... [more]
A0A5A7T9003.0e-11385.773-isopropylmalate dehydratase small subunit 3-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3AT323.0e-11385.773-isopropylmalate dehydratase small subunit 3-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1ID741.9e-11284.193-isopropylmalate dehydratase small subunit 3-like OS=Cucurbita maxima OX=3661 G... [more]
BLAST of Carg02459-RA vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43090.14.5e-8564.62Aconitase/3-isopropylmalate dehydratase protein [more]
AT3G58990.11.3e-7974.38isopropylmalate isomerase 1 [more]
AT2G43100.11.0e-7357.59isopropylmalate isomerase 2 [more]
AT2G43090.28.8e-6555.00Aconitase/3-isopropylmalate dehydratase protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015928Aconitase/3-isopropylmalate dehydratase, swivelGENE3D3.20.19.10Aconitase, domain 4coord: 73..249
e-value: 5.6E-43
score: 148.5
IPR011827Hydrolyase LeuD/HacB/DmdBTIGRFAMTIGR02087TIGR02087coord: 78..246
e-value: 5.0E-35
score: 118.5
IPR000573Aconitase A/isopropylmalate dehydratase small subunit, swivel domainPFAMPF00694Aconitase_Ccoord: 134..189
e-value: 2.8E-17
score: 63.2
NoneNo IPR availablePANTHERPTHR433453-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATEDcoord: 17..252
NoneNo IPR availablePANTHERPTHR43345:SF8BNAA05G34440D PROTEINcoord: 17..252
NoneNo IPR availableSUPERFAMILY52016LeuD/IlvD-likecoord: 74..251
IPR0339403-isopropylmalate dehydratase, swivel domainCDDcd01577IPMI_Swivelcoord: 82..209
e-value: 2.20928E-36
score: 122.312

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg02459Carg02459gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02459-RA:1Carg02459-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02459-RA:cdsCarg02459-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg02459-RACarg02459-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043436 oxoacid metabolic process
molecular_function GO:0016836 hydro-lyase activity