Carg02077-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02077-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 7672076 .. 7672408 (-)
Sequence length	333
RNA-Seq Expression	Carg02077-RA
Synteny	Carg02077-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGATTGATGAATGAAATCAAATTGTATAAAGAAGCACGACCCAATCGATCTGCCAGAGAGTTCGGACCAAACACGGAAATGAACACCAATTTTCAAACGGAAATCAATCAAATTCATGAAAAGAATCTCCAAGAATTCCAATCCAACAAATCCCCTTTCCATCCCATCTCAATTGGTTCTACTCCTCTCCCTGCAGAAACCTCTCCAATTGGTTGCGCTCCATTCCCGCCACCGCCGAACGCCGCAAGACCCCTCCATTTCCCGCAGCTGGACCTCCCCAACCGCCGCATCCGGTTGCGCTTGGATGCGGAGAGAGAAATGCAGTGA

mRNA sequence

ATGGAGGGATTGATGAATGAAATCAAATTGTATAAAGAAGCACGACCCAATCGATCTGCCAGAGAGTTCGGACCAAACACGGAAATGAACACCAATTTTCAAACGGAAATCAATCAAATTCATGAAAAGAATCTCCAAGAATTCCAATCCAACAAATCCCCTTTCCATCCCATCTCAATTGGTTCTACTCCTCTCCCTGCAGAAACCTCTCCAATTGGTTGCGCTCCATTCCCGCCACCGCCGAACGCCGCAAGACCCCTCCATTTCCCGCAGCTGGACCTCCCCAACCGCCGCATCCGGTTGCGCTTGGATGCGGAGAGAGAAATGCAGTGA

Coding sequence (CDS)

ATGGAGGGATTGATGAATGAAATCAAATTGTATAAAGAAGCACGACCCAATCGATCTGCCAGAGAGTTCGGACCAAACACGGAAATGAACACCAATTTTCAAACGGAAATCAATCAAATTCATGAAAAGAATCTCCAAGAATTCCAATCCAACAAATCCCCTTTCCATCCCATCTCAATTGGTTCTACTCCTCTCCCTGCAGAAACCTCTCCAATTGGTTGCGCTCCATTCCCGCCACCGCCGAACGCCGCAAGACCCCTCCATTTCCCGCAGCTGGACCTCCCCAACCGCCGCATCCGGTTGCGCTTGGATGCGGAGAGAGAAATGCAGTGA

Protein sequence

MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISIGSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ

Homology

[Close]

BLAST of Carg02077-RA vs. NCBI nr
Match: KAG7031845.1 (hypothetical protein SDJN02_05886, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.4 bits (568), Expect = 9.6e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISI 60
           MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISI
Sbjct: 1   MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISI 60

Query: 61  GSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ 111
           GSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ
Sbjct: 61  GSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ 110

[Close]

BLAST of Carg02077-RA vs. NCBI nr
Match: KAG6601036.1 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-07
Identity = 39/70 (55.71%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 29 MNTNFQTEINQIHEKNLQEFQSNKSPFHPI----------------SIGSTPLPAETSPI 83
          MNTNFQTEINQIHEKNLQEFQSNKSPFHPI                SI +T    +T P 
Sbjct: 1  MNTNFQTEINQIHEKNLQEFQSNKSPFHPIYWFYSSPCRNLSNWLRSIPATAERRKTPPF 60

The following BLAST results are available for this feature:

BLAST of Carg02077-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031845.1	9.6e-55	100.00	hypothetical protein SDJN02_05886, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601036.1	9.7e-07	55.71	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplas...	[more]

BLAST of Carg02077-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02077-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02077-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02077	Carg02077	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02077-RA:1	Carg02077-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02077-RA:cds	Carg02077-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02077-RA	Carg02077-RA-protein	polypeptide