Carg02077 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02077
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 7672076 .. 7672408 (-)
RNA-Seq ExpressionCarg02077
SyntenyCarg02077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGATTGATGAATGAAATCAAATTGTATAAAGAAGCACGACCCAATCGATCTGCCAGAGAGTTCGGACCAAACACGGAAATGAACACCAATTTTCAAACGGAAATCAATCAAATTCATGAAAAGAATCTCCAAGAATTCCAATCCAACAAATCCCCTTTCCATCCCATCTCAATTGGTTCTACTCCTCTCCCTGCAGAAACCTCTCCAATTGGTTGCGCTCCATTCCCGCCACCGCCGAACGCCGCAAGACCCCTCCATTTCCCGCAGCTGGACCTCCCCAACCGCCGCATCCGGTTGCGCTTGGATGCGGAGAGAGAAATGCAGTGA

mRNA sequence

ATGGAGGGATTGATGAATGAAATCAAATTGTATAAAGAAGCACGACCCAATCGATCTGCCAGAGAGTTCGGACCAAACACGGAAATGAACACCAATTTTCAAACGGAAATCAATCAAATTCATGAAAAGAATCTCCAAGAATTCCAATCCAACAAATCCCCTTTCCATCCCATCTCAATTGGTTCTACTCCTCTCCCTGCAGAAACCTCTCCAATTGGTTGCGCTCCATTCCCGCCACCGCCGAACGCCGCAAGACCCCTCCATTTCCCGCAGCTGGACCTCCCCAACCGCCGCATCCGGTTGCGCTTGGATGCGGAGAGAGAAATGCAGTGA

Coding sequence (CDS)

ATGGAGGGATTGATGAATGAAATCAAATTGTATAAAGAAGCACGACCCAATCGATCTGCCAGAGAGTTCGGACCAAACACGGAAATGAACACCAATTTTCAAACGGAAATCAATCAAATTCATGAAAAGAATCTCCAAGAATTCCAATCCAACAAATCCCCTTTCCATCCCATCTCAATTGGTTCTACTCCTCTCCCTGCAGAAACCTCTCCAATTGGTTGCGCTCCATTCCCGCCACCGCCGAACGCCGCAAGACCCCTCCATTTCCCGCAGCTGGACCTCCCCAACCGCCGCATCCGGTTGCGCTTGGATGCGGAGAGAGAAATGCAGTGA

Protein sequence

MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISIGSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ
Homology
[Close]
BLAST of Carg02077 vs. NCBI nr
Match: KAG7031845.1 (hypothetical protein SDJN02_05886, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.4 bits (568), Expect = 9.6e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISI 60
           MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISI
Sbjct: 1   MEGLMNEIKLYKEARPNRSAREFGPNTEMNTNFQTEINQIHEKNLQEFQSNKSPFHPISI 60

Query: 61  GSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ 111
           GSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ
Sbjct: 61  GSTPLPAETSPIGCAPFPPPPNAARPLHFPQLDLPNRRIRLRLDAEREMQ 110

[Close]
BLAST of Carg02077 vs. NCBI nr
Match: KAG6601036.1 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-07
Identity = 39/70 (55.71%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 29 MNTNFQTEINQIHEKNLQEFQSNKSPFHPI----------------SIGSTPLPAETSPI 83
          MNTNFQTEINQIHEKNLQEFQSNKSPFHPI                SI +T    +T P 
Sbjct: 1  MNTNFQTEINQIHEKNLQEFQSNKSPFHPIYWFYSSPCRNLSNWLRSIPATAERRKTPPF 60

The following BLAST results are available for this feature:
BLAST of Carg02077 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031845.19.6e-55100.00hypothetical protein SDJN02_05886, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601036.19.7e-0755.71CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplas... [more]
BLAST of Carg02077 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02077 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02077 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02077-RACarg02077-RAmRNA