Carg00605-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00605-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Zinc finger, B-box
Location	Carg_Chr03: 5830640 .. 5831512 (+)
Sequence length	645
RNA-Seq Expression	Carg00605-RA
Synteny	Carg00605-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATACTCTGTGATTCCTGCGAAACTGCTGCAGCAACTTTGTTTTGTGCAGCTGACGAGGCTGCTCTCTGCACAGCCTGTGATGCAAAGGTATATAAAACCAAGTGTGTGCGTGTATTAATTTTGGAAGTCTTTTGCTGATATATGTGTTTGGGCAGGTGCACATGTGCAACAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCAAGCGAAGTTCCTCGCTGTGATATATGTGAGAATGCACCAGGTATAATCATTTTGTCTTGTTTTTTTTTTCTTGGAGGTTTCTGTAAGGATTAACATTTTGCGGGAAATTTATAAAATTTTTGCAGCTTTCTTTTGGTGTGAGATAGATGGGAGTTCCTTGTGCTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGGTTGGTGATTTCATCACATCCTTCTCTCTTCACATTCATACAAGATTAAGCTTTGTTTGTTTGATTGTTTTGCAGTTTCCAGGGGATACACAAAATGATGTGAAGGGCCCAAATGCAAAGCCGATGGAACAGGTTGAGACAGTGAGAGGCCAGAATCAAGAAAGGGGTGAGGAGATTGAGAAGCAGGAAGAAGATTTGAGATTCTCTGGTGTTAAAGGGTATTCAAATGGAGATAGGCACTCCAAGCGGCCTAATAAAGTGATTGATTTGAACATTTAGCAGCTTTAGTACTACTTTGTATTGCTACAATTTTCAATTGTAACTTTGATAATGAGTATCTGAACGTTGTAAACTCTTGATTCTAAAATTGCTACCCAAACCAGGAATGGGATGCTCAGGAACTATGCCTCATCT

mRNA sequence

ATGAGGATACTCTGTGATTCCTGCGAAACTGCTGCAGCAACTTTGTTTTGTGCAGCTGACGAGGCTGCTCTCTGCACAGCCTGTGATGCAAAGGTGCACATGTGCAACAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCAAGCGAAGTTCCTCGCTGTGATATATGTGAGAATGCACCAGCTTTCTTTTGGTGTGAGATAGATGGGAGTTCCTTGTGCTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATACACAAAATGATGTGAAGGGCCCAAATGCAAAGCCGATGGAACAGGTTGAGACAGTGAGAGGCCAGAATCAAGAAAGGGGTGAGGAGATTGAGAAGCAGGAAGAAGATTTGAGATTCTCTGGTGTTAAAGGGTATTCAAATGGAGATAGGCACTCCAAGCGGCCTAATAAAGTGATTGATTTGAACATTTAGCAGCTTTAGTACTACTTTGTATTGCTACAATTTTCAATTGTAACTTTGATAATGAGTATCTGAACGTTGTAAACTCTTGATTCTAAAATTGCTACCCAAACCAGGAATGGGATGCTCAGGAACTATGCCTCATCT

Coding sequence (CDS)

ATGAGGATACTCTGTGATTCCTGCGAAACTGCTGCAGCAACTTTGTTTTGTGCAGCTGACGAGGCTGCTCTCTGCACAGCCTGTGATGCAAAGGTGCACATGTGCAACAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCAAGCGAAGTTCCTCGCTGTGATATATGTGAGAATGCACCAGCTTTCTTTTGGTGTGAGATAGATGGGAGTTCCTTGTGCTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATACACAAAATGATGTGAAGGGCCCAAATGCAAAGCCGATGGAACAGGTTGAGACAGTGAGAGGCCAGAATCAAGAAAGGGGTGAGGAGATTGAGAAGCAGGAAGAAGATTTGAGATTCTCTGGTGTTAAAGGGTATTCAAATGGAGATAGGCACTCCAAGCGGCCTAATAAAGTGATTGATTTGAACATTTAG

Protein sequence

MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPMEQVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI

Homology

[Close]

BLAST of Carg00605-RA vs. NCBI nr
Match: KAG6603926.1 (B-box zinc finger protein 19, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034106.1 B-box zinc finger protein 19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348.2 bits (892), Expect = 4.0e-92
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. NCBI nr
Match: XP_023543376.1 (B-box zinc finger protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKP+E
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPVE 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. NCBI nr
Match: XP_022949899.1 (B-box zinc finger protein 19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 5.7e-91
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPS+VPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSQVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGD HSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDGHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. NCBI nr
Match: XP_023522538.1 (B-box zinc finger protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.0 bits (881), Expect = 7.5e-91
Identity = 167/169 (98.82%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEE EKQEEDLRFSGVKGYSN DRHSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEETEKQEEDLRFSGVKGYSNADRHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. NCBI nr
Match: XP_022978974.1 (B-box zinc finger protein 18-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 2.2e-90
Identity = 167/169 (98.82%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKG NAKPME
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGSNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEE EKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEENEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. ExPASy Swiss-Prot
Match: C0SVM5 (B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-48
Identity = 101/168 (60.12%), Postives = 113/168 (67.26%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCD+CE AAA +FCAADEAALC  CD KVHMCNKLASRHVRVGLA PS  P CDICE
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFF+CEIDGSSLCLQCD++VHVGGKR H R+L LRQR+EFPGD          KP E
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGD----------KPKE 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLN 169
                  QNQ                 V    NG+ + K  +++IDLN
Sbjct: 121 NNTRDNLQNQR----------------VSTNGNGEANGKIDDEMIDLN 142

[Close]

BLAST of Carg00605-RA vs. ExPASy Swiss-Prot
Match: Q9SJU5 (B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 6.9e-47
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCD+CE+AAA +FCAADEAALC +CD KVH CNKLASRH+RVGLA+PS  P CDICE
Sbjct: 1   MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFF+CEIDGSSLCLQCD++VHVGGKR H+R+L LRQR+EFPGD  N       +  +
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGLR-CQ 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLN 169
           +  + RGQ      + +    DL  +  + +  G   S    + ID+N
Sbjct: 121 KASSGRGQESNGNGDHDHNMIDLNSNPQRVHEPG---SHNQEEGIDVN 164

[Close]

BLAST of Carg00605-RA vs. ExPASy Swiss-Prot
Match: Q9SYM2 (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 1  MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGL-ANPSEVPRCDIC 60
          M+I C+ CE A AT+ C ADEAALC ACD K+H  NKLA +H RV L A+ S +P+CDIC
Sbjct: 1  MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61 ENAPAFFWCEIDGSSLCLQCDVIVHVGGKRM--HKRYL 96
          + A  FF+C  D + LC +CDV +H     +  H+R+L
Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFL 98

[Close]

BLAST of Carg00605-RA vs. ExPASy Swiss-Prot
Match: Q96288 (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-19
Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPS-EVPRCDIC 60
           M+I CD CE A AT+ C ADEAALC  CD ++H  NKLAS+H R+ L + S + PRCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  ENAPAFFWCEIDGSSLCLQCDVIVHVGGKRM--HKRYLRLRQRVEFPGDTQNDVKGPNAK 120
           +   AF +C  D + LC  CD  +HV   R   H+R+L    +V              +K
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTI-------CSK 120

Query: 121 PMEQVETVRGQNQERGEEI 137
            +E+ +     NQ++  +I
Sbjct: 121 EIEKNQPEPSNNQQKANQI 132

[Close]

BLAST of Carg00605-RA vs. ExPASy Swiss-Prot
Match: Q9SID1 (B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 56/135 (41.48%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPS-EVPRCDIC 60
           M+I CD CE A ATL C ADEAALC  CD +VH  NKLAS+H R+ L + S + P CDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 61  ENAPAFFWCEIDGSSLCLQCDVIVHVGGKRM--HKRYLRLRQRVEFPGDTQN-DVKGPNA 120
               AF +C  D + LC  CD   H    R   H+R+L    RV     + N +V+  + 
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query: 121 KPMEQVETVRGQNQE 132
            P  Q    +   Q+
Sbjct: 121 DPSNQQSLSKPPTQQ 135

[Close]

BLAST of Carg00605-RA vs. ExPASy TrEMBL
Match: A0A6J1GE89 (B-box zinc finger protein 19-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453156 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 2.8e-91
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPS+VPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSQVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGD HSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDGHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. ExPASy TrEMBL
Match: A0A6J1IVH8 (B-box zinc finger protein 18-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478764 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 167/169 (98.82%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKG NAKPME
Sbjct: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGSNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEE EKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEENEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 169

[Close]

BLAST of Carg00605-RA vs. ExPASy TrEMBL
Match: A0A6J1GE32 (B-box zinc finger protein 19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453156 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.6e-84
Identity = 160/169 (94.67%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPS+VPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSQVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAP       DGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME
Sbjct: 61  NAP-------DGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGD HSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDGHSKRPNKVIDLNI 162

[Close]

BLAST of Carg00605-RA vs. ExPASy TrEMBL
Match: A0A6J1IRU8 (B-box zinc finger protein 18-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478764 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 160/169 (94.67%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAP       DGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKG NAKPME
Sbjct: 61  NAP-------DGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGSNAKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 170
           QVETVRGQNQERGEE EKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI
Sbjct: 121 QVETVRGQNQERGEENEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 162

[Close]

BLAST of Carg00605-RA vs. ExPASy TrEMBL
Match: A0A5A7SKM7 (B-box zinc finger protein 19-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001490 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.8e-75
Identity = 148/170 (87.06%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCDSCE+AAATLFCAADEAALC  CD KVHMCNKLASRHVRVGLANPSEVPRCDICE
Sbjct: 1   MRILCDSCESAAATLFCAADEAALCAVCDTKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFF+CEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGD +ND K  N KPME
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKRNDGKDQNVKPME 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGV-KGYSNGDRHSKRPNKVIDLNI 170
           QVE V+GQN+ERG EIEK EE LR SGV K YSNGD HSKRPNKVIDLN+
Sbjct: 121 QVEKVKGQNEERG-EIEKHEE-LRVSGVEKDYSNGDGHSKRPNKVIDLNM 168

[Close]

BLAST of Carg00605-RA vs. TAIR 10
Match: AT4G38960.1 (B-box type zinc finger family protein )

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-49
Identity = 101/168 (60.12%), Postives = 113/168 (67.26%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCD+CE AAA +FCAADEAALC  CD KVHMCNKLASRHVRVGLA PS  P CDICE
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFF+CEIDGSSLCLQCD++VHVGGKR H R+L LRQR+EFPGD          KP E
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGD----------KPKE 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLN 169
                  QNQ                 V    NG+ + K  +++IDLN
Sbjct: 121 NNTRDNLQNQR----------------VSTNGNGEANGKIDDEMIDLN 142

[Close]

BLAST of Carg00605-RA vs. TAIR 10
Match: AT2G21320.1 (B-box zinc finger family protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.9e-48
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICE 60
           MRILCD+CE+AAA +FCAADEAALC +CD KVH CNKLASRH+RVGLA+PS  P CDICE
Sbjct: 1   MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61  NAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPME 120
           NAPAFF+CEIDGSSLCLQCD++VHVGGKR H+R+L LRQR+EFPGD  N       +  +
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGLR-CQ 120

Query: 121 QVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLN 169
           +  + RGQ      + +    DL  +  + +  G   S    + ID+N
Sbjct: 121 KASSGRGQESNGNGDHDHNMIDLNSNPQRVHEPG---SHNQEEGIDVN 164

[Close]

BLAST of Carg00605-RA vs. TAIR 10
Match: AT4G38960.3 (B-box type zinc finger family protein )

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-43
Identity = 101/211 (47.87%), Postives = 113/211 (53.55%), Query Frame = 0


Query: 1   MRILCDSCETAAATLFCAADEAALCTACDAK----------------------------- 60
           MRILCD+CE AAA +FCAADEAALC  CD K                             
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKALHMRLDISKCSESVKRVQIVETSSLIWW 60

Query: 61  --------------VHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFWCEIDGSSLCL 120
                         VHMCNKLASRHVRVGLA PS  P CDICENAPAFF+CEIDGSSLCL
Sbjct: 61  IKMGTFCLQSLHLVVHMCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCL 120

Query: 121 QCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPMEQVETVRGQNQERGEEIE 169
           QCD++VHVGGKR H R+L LRQR+EFPGD          KP E       QNQ       
Sbjct: 121 QCDMVVHVGGKRTHGRFLLLRQRIEFPGD----------KPKENNTRDNLQNQR------ 180

[Close]

BLAST of Carg00605-RA vs. TAIR 10
Match: AT4G38960.2 (B-box type zinc finger family protein )

HSP 1 Score: 141.0 bits (354), Expect = 9.0e-34
Identity = 75/135 (55.56%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 34  MCNKLASRHVRVGLANPSEVPRCDICENAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKR 93
           MCNKLASRHVRVGLA PS  P CDICENAPAFF+CEIDGSSLCLQCD++VHVGGKR H R
Sbjct: 1   MCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGR 60

Query: 94  YLRLRQRVEFPGDTQNDVKGPNAKPMEQVETVRGQNQERGEEIEKQEEDLRFSGVKGYSN 153
           +L LRQR+EFPGD          KP E       QNQ                 V    N
Sbjct: 61  FLLLRQRIEFPGD----------KPKENNTRDNLQNQR----------------VSTNGN 109

Query: 154 GDRHSKRPNKVIDLN 169
           G+ + K  +++IDLN
Sbjct: 121 GEANGKIDDEMIDLN 109

[Close]

BLAST of Carg00605-RA vs. TAIR 10
Match: AT1G78600.1 (light-regulated zinc finger protein 1 )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 1  MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGL-ANPSEVPRCDIC 60
          M+I C+ CE A AT+ C ADEAALC ACD K+H  NKLA +H RV L A+ S +P+CDIC
Sbjct: 1  MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61 ENAPAFFWCEIDGSSLCLQCDVIVHVGGKRM--HKRYL 96
          + A  FF+C  D + LC +CDV +H     +  H+R+L
Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFL 98

The following BLAST results are available for this feature:

BLAST of Carg00605-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603926.1	4.0e-92	100.00	B-box zinc finger protein 19, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023543376.1	1.2e-91	99.41	B-box zinc finger protein 19-like [Cucurbita pepo subsp. pepo]	[more]
XP_022949899.1	5.7e-91	98.82	B-box zinc finger protein 19-like isoform X1 [Cucurbita moschata]	[more]
XP_023522538.1	7.5e-91	98.82	B-box zinc finger protein 18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022978974.1	2.2e-90	98.82	B-box zinc finger protein 18-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg00605-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0SVM5	4.8e-48	60.12	B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1	[more]
Q9SJU5	6.9e-47	57.14	B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2	[more]
Q9SYM2	1.7e-21	51.02	B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2	[more]
Q96288	4.7e-19	39.57	B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1	[more]
Q9SID1	1.1e-17	41.48	B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2	[more]

BLAST of Carg00605-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE89	2.8e-91	98.82	B-box zinc finger protein 19-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IVH8	1.1e-90	98.82	B-box zinc finger protein 18-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GE32	5.6e-84	94.67	B-box zinc finger protein 19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IRU8	2.1e-83	94.67	B-box zinc finger protein 18-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7SKM7	2.8e-75	87.06	B-box zinc finger protein 19-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Carg00605-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38960.1	3.4e-49	60.12	B-box type zinc finger family protein	[more]
AT2G21320.1	4.9e-48	57.14	B-box zinc finger family protein	[more]
AT4G38960.3	6.2e-43	47.87	B-box type zinc finger family protein	[more]
AT4G38960.2	9.0e-34	55.56	B-box type zinc finger family protein	[more]
AT1G78600.1	1.2e-22	51.02	light-regulated zinc finger protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 4..47 e-value: 2.3E-5 score: 33.8 coord: 51..96 e-value: 1.8E-8 score: 44.1
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 4..34 e-value: 7.8E-6 score: 25.9 coord: 52..85 e-value: 9.5E-6 score: 25.7
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..47 score: 10.508935
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..93 e-value: 2.1E-6 score: 30.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..145
None	No IPR available	PANTHER	PTHR31832	B-BOX ZINC FINGER PROTEIN 22	coord: 1..168
None	No IPR available	PANTHER	PTHR31832:SF5	B-BOX ZINC FINGER PROTEIN 19	coord: 1..168
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 4..47 e-value: 7.53157E-18 score: 70.7895

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg00605	Carg00605	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00605-RA:1	Carg00605-RA:1	exon
Carg00605-RA:2	Carg00605-RA:2	exon
Carg00605-RA:3	Carg00605-RA:3	exon
Carg00605-RA:4	Carg00605-RA:4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00605-RA:cds	Carg00605-RA:cds	CDS
Carg00605-RA:cds	Carg00605-RA:cds_2	CDS
Carg00605-RA:cds	Carg00605-RA:cds_3	CDS
Carg00605-RA:cds	Carg00605-RA:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00605-RA:three_prime_utr	Carg00605-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg00605-RA	Carg00605-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009640	photomorphogenesis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding