Carg00415-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAAAGCTGTGGTGGCTGAAGAATCTCGGCTCACAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTCAATCGGAGGTATTTCTCCTCTTCTTCCGTCCGTTCCTTTACGTTTTTCTCATTGTCAATCGTGGTTTGCTTGGTTCACAGATCGGCCTTGTGATTGGAAGGCTTAGCTCTCCATTAGATAGAGGTTTCGTGTTCGATTTGATCCCAACTCCTCCCAACGATGCCGGAGAGGCGGCTTGTTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTGGATTCCTCGTCTTTGGTTATCGACAACGATTGGGTTGCTGAACACGCTCGCCAGGTGGATTCAATTGTTTTTCATACTTAATTTACGAAGATAGTCTTAATGGATATAATGCATTTCTTGTGCTATGAATTATGTTTTCGGGATCCCAATTTGCAAAAGAGGTCTGCTGATCATTTTCATTCCAGGTCCGGCGAATGCTACCGGGAGGTGTGAAGGTGATTGGCGTTTATGTATGGGCTAGTGAAACGGCGGTTAAGAATTCAACCCTAATGCTTTGCCAGGTATCATTGTCACCCCGTTCGACATGTAGTTTTAGAAAGGTTACAGAGCTTACCTTGTGATGTAGGATCCATTTTTCTTCTTTTGGGCAAAAATTACTCGTCCATCTTTTGAATGTTGTAGATATTAGATTGATTTATTTGTAACTCATTCAAGTATATGGACTGATGAGTTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTGCTTCTAAGGGTGGGGAAACCTCTCTCTAACAGACGTGTTTTAAAACCTTGAGGGGAAGCCTAGAAGGGAAAGCCCAAAGAGGATAATATTTGCTAGCGGTGGACTTCAGGTGTTACAAATGGCATCAGAGCTAGACACTGATCAGTGTGCCAGCGAGGACGCTGGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAGCATTGCTTATAAGCATGTGGAAACCTTTCCCTAACAGACACGTTTTAAGACCTTAGGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATATGCTAGCGGTGGACTTGGGCTGTTACATGAGTAGCTTCTCATAGATTAATGAATGACCTAGTGAGGGGGTTTTGCGACAGTTCTTTCTCGAAATTTCTCCATTAGTTAGCTATTGAGACGATTTGGAGAGGCTTGAGTCGGAACCTTCGTATCGGGAGGAGTCTTTTGAGCGTTGAGCTAACTACAACCAAAATCAGTGTTATGGTGGATTGAAGATTTTCTACGTTCTGTTGGAGACCATCAAATGCTAATATATTGTTTCCTGCAGGCTGTAAAGGCTGTAGCAGAAGCAGCGCCACTTTCAGTCATTGACTCAGAGGAAAGACTCCTGGTTCATATCTGTTATAGTCCAAGGAGGTGTGTACATCAAAATCCTCATGTATTTAATTCACTTCCCTTCCTTCTAGAACAGTCATAGTGCCAAGAAACTTTTGATGTGCTGACAAACAAGTTCGGCAGGTGGACATGTCGAAATTTCTTTTTGACATCAAATCTCACATCAAACAGCCTGCGTCCTTCTGATTTTAAAATGGGAAGGGTCTTAACATCACTTCAGACATACAAGTGTATATACAACTTCGATATGAGGTAACTTG ATGGTGAAAGCTGTGGTGGCTGAAGAATCTCGGCTCACAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTCAATCGGAGGTATTTCTCCTCTTCTTCCGTCCGTTCCTTTACGTTTTTCTCATTGTCAATCGTGGTTTGCTTGGTTCACAGATCGGCCTTGTGATTGGAAGGCTTAGCTCTCCATTAGATAGAGGTTTCGTGTTCGATTTGATCCCAACTCCTCCCAACGATGCCGGAGAGGCGGCTTGTTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTGGATTCCTCGTCTTTGGTTATCGACAACGATTGGGTTGCTGAACACGCTCGCCAGGTCCGGCGAATGCTACCGGGAGGTGTGAAGGTGATTGGCGTTTATGTATGGGCTAGTGAAACGGCGGTTAAGAATTCAACCCTAATGCTTTGCCAGGCTGTAAAGGCTGTAGCAGAAGCAGCGCCACTTTCAGTCATTGACTCAGAGGAAAGACTCCTGGTTCATATCTGTTATAGTCCAAGGAGGTGGACATGTCGAAATTTCTTTTTGACATCAAATCTCACATCAAACAGCCTGCGTCCTTCTGATTTTAAAATGGGAAGGGTCTTAACATCACTTCAGACATACAAGTGTATATACAACTTCGATATGAGGTAACTTG ATGGTGAAAGCTGTGGTGGCTGAAGAATCTCGGCTCACAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTCAATCGGAGGTATTTCTCCTCTTCTTCCGTCCGTTCCTTTACGTTTTTCTCATTGTCAATCGTGGTTTGCTTGGTTCACAGATCGGCCTTGTGATTGGAAGGCTTAGCTCTCCATTAGATAGAGGTTTCGTGTTCGATTTGATCCCAACTCCTCCCAACGATGCCGGAGAGGCGGCTTGTTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTGGATTCCTCGTCTTTGGTTATCGACAACGATTGGGTTGCTGAACACGCTCGCCAGGTCCGGCGAATGCTACCGGGAGGTGTGAAGGTGATTGGCGTTTATGTATGGGCTAGTGAAACGGCGGTTAAGAATTCAACCCTAATGCTTTGCCAGGCTGTAAAGGCTGTAGCAGAAGCAGCGCCACTTTCAGTCATTGACTCAGAGGAAAGACTCCTGGTTCATATCTGTTATAGTCCAAGGAGGTGGACATGTCGAAATTTCTTTTTGACATCAAATCTCACATCAAACAGCCTGCGTCCTTCTGATTTTAAAATGGGAAGGGTCTTAACATCACTTCAGACATACAAGTGTATATACAACTTCGATATGAGGTAA MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEHARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR Homology
BLAST of Carg00415-RA vs. NCBI nr
Match: KAG7031758.1 (Protein odr-4-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 445.3 bits (1144), Expect = 3.2e-121 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of Carg00415-RA vs. NCBI nr
Match: KAG6608118.1 (Protein odr-4-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 387.5 bits (994), Expect = 8.0e-104 Identity = 204/228 (89.47%), Postives = 204/228 (89.47%), Query Frame = 0
BLAST of Carg00415-RA vs. NCBI nr
Match: XP_022940460.1 (protein odr-4 homolog isoform X2 [Cucurbita moschata]) HSP 1 Score: 385.2 bits (988), Expect = 4.0e-103 Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0
BLAST of Carg00415-RA vs. NCBI nr
Match: XP_022940459.1 (protein odr-4 homolog isoform X1 [Cucurbita moschata]) HSP 1 Score: 385.2 bits (988), Expect = 4.0e-103 Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0
BLAST of Carg00415-RA vs. NCBI nr
Match: XP_023525736.1 (protein odr-4 homolog isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 378.6 bits (971), Expect = 3.7e-101 Identity = 200/228 (87.72%), Postives = 200/228 (87.72%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy Swiss-Prot
Match: A3KNB6 (Protein odr-4 homolog OS=Xenopus laevis OX=8355 GN=odr4 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.3e-11 Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy Swiss-Prot
Match: Q0VA36 (Protein odr-4 homolog OS=Xenopus tropicalis OX=8364 GN=odr4 PE=2 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 3.5e-09 Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy Swiss-Prot
Match: Q4PJX1 (Protein odr-4 homolog OS=Mus musculus OX=10090 GN=Odr4 PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08 Identity = 52/176 (29.55%), Postives = 87/176 (49.43%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy Swiss-Prot
Match: Q5SWX8 (Protein odr-4 homolog OS=Homo sapiens OX=9606 GN=ODR4 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.0e-08 Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy Swiss-Prot
Match: Q5ZKH8 (Protein odr-4 homolog OS=Gallus gallus OX=9031 GN=ODR4 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06 Identity = 43/169 (25.44%), Postives = 80/169 (47.34%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy TrEMBL
Match: A0A6J1FQM4 (protein odr-4 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446052 PE=3 SV=1) HSP 1 Score: 385.2 bits (988), Expect = 1.9e-103 Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy TrEMBL
Match: A0A6J1FK69 (protein odr-4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446052 PE=3 SV=1) HSP 1 Score: 385.2 bits (988), Expect = 1.9e-103 Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy TrEMBL
Match: A0A6J1IY46 (protein odr-4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480267 PE=3 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 3.1e-101 Identity = 199/228 (87.28%), Postives = 201/228 (88.16%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy TrEMBL
Match: A0A6J1J0R7 (protein odr-4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480267 PE=3 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 3.1e-101 Identity = 199/228 (87.28%), Postives = 201/228 (88.16%), Query Frame = 0
BLAST of Carg00415-RA vs. ExPASy TrEMBL
Match: A0A6J1DPI2 (protein odr-4 homolog OS=Momordica charantia OX=3673 GN=LOC111021871 PE=3 SV=1) HSP 1 Score: 361.7 bits (927), Expect = 2.3e-96 Identity = 185/228 (81.14%), Postives = 195/228 (85.53%), Query Frame = 0
BLAST of Carg00415-RA vs. TAIR 10
Match: AT3G28670.1 (oxidoreductase, zinc-binding dehydrogenase family protein ) HSP 1 Score: 251.5 bits (641), Expect = 6.4e-67 Identity = 133/228 (58.33%), Postives = 165/228 (72.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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