Carg00415 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00415
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein odr-4 homolog
Location	Carg_Chr04: 7119346 .. 7121063 (-)
RNA-Seq Expression	Carg00415
Synteny	Carg00415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGCTGTGGTGGCTGAAGAATCTCGGCTCACAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTCAATCGGAGGTATTTCTCCTCTTCTTCCGTCCGTTCCTTTACGTTTTTCTCATTGTCAATCGTGGTTTGCTTGGTTCACAGATCGGCCTTGTGATTGGAAGGCTTAGCTCTCCATTAGATAGAGGTTTCGTGTTCGATTTGATCCCAACTCCTCCCAACGATGCCGGAGAGGCGGCTTGTTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTGGATTCCTCGTCTTTGGTTATCGACAACGATTGGGTTGCTGAACACGCTCGCCAGGTGGATTCAATTGTTTTTCATACTTAATTTACGAAGATAGTCTTAATGGATATAATGCATTTCTTGTGCTATGAATTATGTTTTCGGGATCCCAATTTGCAAAAGAGGTCTGCTGATCATTTTCATTCCAGGTCCGGCGAATGCTACCGGGAGGTGTGAAGGTGATTGGCGTTTATGTATGGGCTAGTGAAACGGCGGTTAAGAATTCAACCCTAATGCTTTGCCAGGTATCATTGTCACCCCGTTCGACATGTAGTTTTAGAAAGGTTACAGAGCTTACCTTGTGATGTAGGATCCATTTTTCTTCTTTTGGGCAAAAATTACTCGTCCATCTTTTGAATGTTGTAGATATTAGATTGATTTATTTGTAACTCATTCAAGTATATGGACTGATGAGTTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTGCTTCTAAGGGTGGGGAAACCTCTCTCTAACAGACGTGTTTTAAAACCTTGAGGGGAAGCCTAGAAGGGAAAGCCCAAAGAGGATAATATTTGCTAGCGGTGGACTTCAGGTGTTACAAATGGCATCAGAGCTAGACACTGATCAGTGTGCCAGCGAGGACGCTGGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAGCATTGCTTATAAGCATGTGGAAACCTTTCCCTAACAGACACGTTTTAAGACCTTAGGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATATGCTAGCGGTGGACTTGGGCTGTTACATGAGTAGCTTCTCATAGATTAATGAATGACCTAGTGAGGGGGTTTTGCGACAGTTCTTTCTCGAAATTTCTCCATTAGTTAGCTATTGAGACGATTTGGAGAGGCTTGAGTCGGAACCTTCGTATCGGGAGGAGTCTTTTGAGCGTTGAGCTAACTACAACCAAAATCAGTGTTATGGTGGATTGAAGATTTTCTACGTTCTGTTGGAGACCATCAAATGCTAATATATTGTTTCCTGCAGGCTGTAAAGGCTGTAGCAGAAGCAGCGCCACTTTCAGTCATTGACTCAGAGGAAAGACTCCTGGTTCATATCTGTTATAGTCCAAGGAGGTGTGTACATCAAAATCCTCATGTATTTAATTCACTTCCCTTCCTTCTAGAACAGTCATAGTGCCAAGAAACTTTTGATGTGCTGACAAACAAGTTCGGCAGGTGGACATGTCGAAATTTCTTTTTGACATCAAATCTCACATCAAACAGCCTGCGTCCTTCTGATTTTAAAATGGGAAGGGTCTTAACATCACTTCAGACATACAAGTGTATATACAACTTCGATATGAGGTAACTTG

mRNA sequence

ATGGTGAAAGCTGTGGTGGCTGAAGAATCTCGGCTCACAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTCAATCGGAGGTATTTCTCCTCTTCTTCCGTCCGTTCCTTTACGTTTTTCTCATTGTCAATCGTGGTTTGCTTGGTTCACAGATCGGCCTTGTGATTGGAAGGCTTAGCTCTCCATTAGATAGAGGTTTCGTGTTCGATTTGATCCCAACTCCTCCCAACGATGCCGGAGAGGCGGCTTGTTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTGGATTCCTCGTCTTTGGTTATCGACAACGATTGGGTTGCTGAACACGCTCGCCAGGTCCGGCGAATGCTACCGGGAGGTGTGAAGGTGATTGGCGTTTATGTATGGGCTAGTGAAACGGCGGTTAAGAATTCAACCCTAATGCTTTGCCAGGCTGTAAAGGCTGTAGCAGAAGCAGCGCCACTTTCAGTCATTGACTCAGAGGAAAGACTCCTGGTTCATATCTGTTATAGTCCAAGGAGGTGGACATGTCGAAATTTCTTTTTGACATCAAATCTCACATCAAACAGCCTGCGTCCTTCTGATTTTAAAATGGGAAGGGTCTTAACATCACTTCAGACATACAAGTGTATATACAACTTCGATATGAGGTAACTTG

Coding sequence (CDS)

ATGGTGAAAGCTGTGGTGGCTGAAGAATCTCGGCTCACAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTCAATCGGAGGTATTTCTCCTCTTCTTCCGTCCGTTCCTTTACGTTTTTCTCATTGTCAATCGTGGTTTGCTTGGTTCACAGATCGGCCTTGTGATTGGAAGGCTTAGCTCTCCATTAGATAGAGGTTTCGTGTTCGATTTGATCCCAACTCCTCCCAACGATGCCGGAGAGGCGGCTTGTTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTGGATTCCTCGTCTTTGGTTATCGACAACGATTGGGTTGCTGAACACGCTCGCCAGGTCCGGCGAATGCTACCGGGAGGTGTGAAGGTGATTGGCGTTTATGTATGGGCTAGTGAAACGGCGGTTAAGAATTCAACCCTAATGCTTTGCCAGGCTGTAAAGGCTGTAGCAGAAGCAGCGCCACTTTCAGTCATTGACTCAGAGGAAAGACTCCTGGTTCATATCTGTTATAGTCCAAGGAGGTGGACATGTCGAAATTTCTTTTTGACATCAAATCTCACATCAAACAGCCTGCGTCCTTCTGATTTTAAAATGGGAAGGGTCTTAACATCACTTCAGACATACAAGTGTATATACAACTTCGATATGAGGTAA

Protein sequence

MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEHARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR

Homology

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BLAST of Carg00415 vs. NCBI nr
Match: KAG7031758.1 (Protein odr-4-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 445.3 bits (1144), Expect = 3.2e-121
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH
Sbjct: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 228

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BLAST of Carg00415 vs. NCBI nr
Match: KAG6608118.1 (Protein odr-4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.5 bits (994), Expect = 8.0e-104
Identity = 204/228 (89.47%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAIQSE                        IGLVIGRLS
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIQSE------------------------IGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH
Sbjct: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

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BLAST of Carg00415 vs. NCBI nr
Match: XP_022940460.1 (protein odr-4 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 385.2 bits (988), Expect = 4.0e-103
Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGRLS
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH
Sbjct: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

[Close]

BLAST of Carg00415 vs. NCBI nr
Match: XP_022940459.1 (protein odr-4 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 385.2 bits (988), Expect = 4.0e-103
Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGRLS
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH
Sbjct: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

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BLAST of Carg00415 vs. NCBI nr
Match: XP_023525736.1 (protein odr-4 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 3.7e-101
Identity = 200/228 (87.72%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGRLS
Sbjct: 2   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRLS 61

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVID DWVAEH
Sbjct: 62  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDKDWVAEH 121

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSE RLLVHIC
Sbjct: 122 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEARLLVHIC 181

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRP DFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 182 YSPRRWTCRNFFLTSNLTSNSLRPCDFKMGRVLTSLQTYKCIYNFDMR 205

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BLAST of Carg00415 vs. ExPASy Swiss-Prot
Match: A3KNB6 (Protein odr-4 homolog OS=Xenopus laevis OX=8355 GN=odr4 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-11
Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 53  GLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVI 112
           GL+IG+ SS  D                    +++ A    K+  ++ K P + S    I
Sbjct: 28  GLIIGQYSSQRD-------------------YAVLTAQTPQKEDQNEEKKPGL-SKLEEI 87

Query: 113 DNDWVAEHARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVI--- 172
           D++WV+ HA QV RMLPGG+ V+GV++  +    K++  +L + V AV +++  + +   
Sbjct: 88  DDEWVSMHASQVGRMLPGGLMVLGVFLMTTPDLSKDAQTILRKLVFAVEKSSMKNRLWNF 147

Query: 173 ---DSEERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFD 228
              D  ER+ +HIC S ++ TCR + +  N   ++ +P+D+K    + S  T  C    D
Sbjct: 148 DEDDVSERVTLHICSSTKKITCRTYDI--NDPKSTPKPADWKYQNSVLSWLTVDCNVRVD 186

[Close]

BLAST of Carg00415 vs. ExPASy Swiss-Prot
Match: Q0VA36 (Protein odr-4 homolog OS=Xenopus tropicalis OX=8364 GN=odr4 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-09
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 0


Query: 53  GLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVI 112
           GL+IG+ SS  D   +    P                 K+D+ + +K     ++     I
Sbjct: 28  GLLIGQYSSQRDYAVLAAQTPQ----------------KEDQSEETKSGFSKLEG----I 87

Query: 113 DNDWVAEHARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVI--- 172
           D++WV+ HA Q+ RMLPGG+ V+GV++  S    K++  +L + V  V +++  + +   
Sbjct: 88  DDEWVSMHASQLGRMLPGGLMVLGVFLMTSPDLSKDAQNVLRKLVFTVEKSSMKNRLWNF 147

Query: 173 ---DSEERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFD 228
              D  ER+ +HIC + ++ TCR + +  N   ++ +P+D+K      S  T  C    D
Sbjct: 148 DDDDVSERVTLHICSATKKITCRTYDI--NDPKSTPKPADWKYQSSGLSWLTIDCSVRVD 186

[Close]

BLAST of Carg00415 vs. ExPASy Swiss-Prot
Match: Q4PJX1 (Protein odr-4 homolog OS=Mus musculus OX=10090 GN=Odr4 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08
Identity = 52/176 (29.55%), Postives = 87/176 (49.43%), Query Frame = 0


Query: 53  GLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVI 112
           GL+IG+ SS  D  +V     TPP +            ++DK K  + K   +D+    +
Sbjct: 28  GLLIGQCSSQKD--YVILATRTPPKEE-----------QNDKVKQPRAK---LDN----L 87

Query: 113 DNDWVAEHARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAV----KAVAEAAPLSV 172
           D +W  EHA QV RMLPGG+ V+G+++  +     +    L + +    K+++      V
Sbjct: 88  DEEWATEHASQVSRMLPGGLVVLGIFIITTLELADDFQNALRRLIFSMEKSMSRKRLWDV 147

Query: 173 IDSE--ERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFK-MGRVLTSLQTYKC 222
            + E  ER+ +HIC S ++ +CR + +      +S RP+D+K   RV  S  +  C
Sbjct: 148 TEDEVSERVTLHICSSTKKISCRTYDVQD--PKSSARPADWKYQSRVSASWLSLDC 181

[Close]

BLAST of Carg00415 vs. ExPASy Swiss-Prot
Match: Q5SWX8 (Protein odr-4 homolog OS=Homo sapiens OX=9606 GN=ODR4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-08
Identity = 51/169 (30.18%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 53  GLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVI 112
           GL+IG+ SS  D  +V     TPP              K+++ +  K     +D+    +
Sbjct: 28  GLLIGQCSSQKD--YVILATRTPP--------------KEEQSENLKHPKAKLDN----L 87

Query: 113 DNDWVAEHARQVRRMLPGGVKVIGVYVWAS---ETAVKNSTLMLCQAV-KAVAEAAPLSV 172
           D +W  EHA QV RMLPGG+ V+GV++  +       +N+   L  AV K++      + 
Sbjct: 88  DEEWATEHACQVSRMLPGGLLVLGVFIITTLELANDFQNALRRLMFAVEKSINRKRLWNF 147

Query: 173 IDSE--ERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTS 216
            + E  ER+ +HIC S ++  CR + +      +S RP+D+K    L+S
Sbjct: 148 TEEEVSERVTLHICASTKKIFCRTYDIHD--PKSSARPADWKYQSGLSS 174

[Close]

BLAST of Carg00415 vs. ExPASy Swiss-Prot
Match: Q5ZKH8 (Protein odr-4 homolog OS=Gallus gallus OX=9031 GN=ODR4 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 43/169 (25.44%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 53  GLVIGRLSSPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVI 112
           GL+IG+ S    R ++     TPP              K+++K+G+   S  +DS    I
Sbjct: 28  GLLIGQCSP--QRDYIIRAARTPP--------------KEEQKEGNTSPS-KLDS----I 87

Query: 113 DNDWVAEHARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVI--- 172
           D +W   HA Q+ RMLPGG+ V+ V++ A+    K+    L + + ++ ++     +   
Sbjct: 88  DEEWFTAHASQISRMLPGGLLVLSVFIIATPELSKDCQNTLRKLIFSIEKSLTKRRLWKP 147

Query: 173 ---DSEERLLVHICYSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTS 216
              D  +R  + IC + ++  CR + +       S +P+D+K    L++
Sbjct: 148 ADEDVSDRAALQICSATKKIVCRTYDVQD--PKGSAKPADWKYQSALSA 173

[Close]

BLAST of Carg00415 vs. ExPASy TrEMBL
Match: A0A6J1FQM4 (protein odr-4 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446052 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.9e-103
Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGRLS
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH
Sbjct: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

[Close]

BLAST of Carg00415 vs. ExPASy TrEMBL
Match: A0A6J1FK69 (protein odr-4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446052 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.9e-103
Identity = 203/228 (89.04%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGRLS
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH
Sbjct: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

[Close]

BLAST of Carg00415 vs. ExPASy TrEMBL
Match: A0A6J1IY46 (protein odr-4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480267 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.1e-101
Identity = 199/228 (87.28%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGR+S
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRIS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           S LDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVID DWVAEH
Sbjct: 61  SSLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDKDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPL+VIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLTVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

[Close]

BLAST of Carg00415 vs. ExPASy TrEMBL
Match: A0A6J1J0R7 (protein odr-4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480267 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.1e-101
Identity = 199/228 (87.28%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVVAEESRLTIVEDRLAQSAI SE                        IGLVIGR+S
Sbjct: 1   MVKAVVAEESRLTIVEDRLAQSAIPSE------------------------IGLVIGRIS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           S LDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVID DWVAEH
Sbjct: 61  SSLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDKDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPL+VIDSEERLLVHIC
Sbjct: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLTVIDSEERLLVHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 204

[Close]

BLAST of Carg00415 vs. ExPASy TrEMBL
Match: A0A6J1DPI2 (protein odr-4 homolog OS=Momordica charantia OX=3673 GN=LOC111021871 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.3e-96
Identity = 185/228 (81.14%), Postives = 195/228 (85.53%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVK VV EESRL +VEDRLAQSA+ SE                        IGLVIGRLS
Sbjct: 1   MVKTVVGEESRLKLVEDRLAQSAVPSE------------------------IGLVIGRLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           SPLDRGFVFDL+PTPPNDAGEAACSLV AIKDDKKKGSKGKSPAVDSSSLVID DWVAEH
Sbjct: 61  SPLDRGFVFDLVPTPPNDAGEAACSLVDAIKDDKKKGSKGKSPAVDSSSLVIDKDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQVRRMLPGGVKV+G+Y+WASETAVKNSTL+LCQ  KAVAEAAPLSVIDSEERLL+HIC
Sbjct: 121 ARQVRRMLPGGVKVVGIYLWASETAVKNSTLLLCQTAKAVAEAAPLSVIDSEERLLIHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRWTCRNFFLTSNLTSNSLRP DFKMGRVLTSLQT+KCI+NFDMR
Sbjct: 181 YSPRRWTCRNFFLTSNLTSNSLRPCDFKMGRVLTSLQTFKCIFNFDMR 204

[Close]

BLAST of Carg00415 vs. TAIR 10
Match: AT3G28670.1 (oxidoreductase, zinc-binding dehydrogenase family protein )

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-67
Identity = 133/228 (58.33%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MVKAVVAEESRLTIVEDRLAQSAIQSEVFLLFFRPFLYVFLIVNRGLLGSQIGLVIGRLS 60
           MVKAVV E++RLT VEDRL+ SAI +EV                        GLVIG+LS
Sbjct: 1   MVKAVVGEDTRLTSVEDRLSHSAIPAEV------------------------GLVIGKLS 60

Query: 61  SPLDRGFVFDLIPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDNDWVAEH 120
           S LDRGFVFDLIPTP ND GE AC+++   KDDK+K SK KS + +SSSL ID+DWVAEH
Sbjct: 61  SVLDRGFVFDLIPTPSNDDGEPACAVL-ETKDDKRKPSKSKSQSSESSSLSIDSDWVAEH 120

Query: 121 ARQVRRMLPGGVKVIGVYVWASETAVKNSTLMLCQAVKAVAEAAPLSVIDSEERLLVHIC 180
           ARQV RML GG+KV+G+YVWAS+ A KNST++LCQA+KAV++A         E LL+HIC
Sbjct: 121 ARQVSRMLLGGMKVVGIYVWASDIAFKNSTMILCQAMKAVSDAIRHLDPSLNEALLIHIC 180

Query: 181 YSPRRWTCRNFFLTSNLTSNSLRPSDFKMGRVLTSLQTYKCIYNFDMR 229
           YSPRRW CR   L+S++TS++LRP DFK+G+VL+SLQ ++C YNF  R
Sbjct: 181 YSPRRWNCRTCLLSSSITSSNLRPCDFKLGKVLSSLQRFRCSYNFSFR 203

The following BLAST results are available for this feature:

BLAST of Carg00415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031758.1	3.2e-121	100.00	Protein odr-4-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608118.1	8.0e-104	89.47	Protein odr-4-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022940460.1	4.0e-103	89.04	protein odr-4 homolog isoform X2 [Cucurbita moschata]	[more]
XP_022940459.1	4.0e-103	89.04	protein odr-4 homolog isoform X1 [Cucurbita moschata]	[more]
XP_023525736.1	3.7e-101	87.72	protein odr-4 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00415 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A3KNB6	6.3e-11	28.73	Protein odr-4 homolog OS=Xenopus laevis OX=8355 GN=odr4 PE=2 SV=1	[more]
Q0VA36	3.5e-09	27.07	Protein odr-4 homolog OS=Xenopus tropicalis OX=8364 GN=odr4 PE=2 SV=2	[more]
Q4PJX1	1.0e-08	29.55	Protein odr-4 homolog OS=Mus musculus OX=10090 GN=Odr4 PE=1 SV=2	[more]
Q5SWX8	5.0e-08	30.18	Protein odr-4 homolog OS=Homo sapiens OX=9606 GN=ODR4 PE=1 SV=1	[more]
Q5ZKH8	2.1e-06	25.44	Protein odr-4 homolog OS=Gallus gallus OX=9031 GN=ODR4 PE=2 SV=1	[more]

BLAST of Carg00415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQM4	1.9e-103	89.04	protein odr-4 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446052 P...	[more]
A0A6J1FK69	1.9e-103	89.04	protein odr-4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446052 P...	[more]
A0A6J1IY46	3.1e-101	87.28	protein odr-4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480267 PE=...	[more]
A0A6J1J0R7	3.1e-101	87.28	protein odr-4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480267 PE=...	[more]
A0A6J1DPI2	2.3e-96	81.14	protein odr-4 homolog OS=Momordica charantia OX=3673 GN=LOC111021871 PE=3 SV=1	[more]

BLAST of Carg00415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28670.1	6.4e-67	58.33	oxidoreductase, zinc-binding dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029454	ODR-4-like	PFAM	PF14778	ODR4-like	coord: 53..228 e-value: 1.0E-47 score: 162.8
IPR029454	ODR-4-like	PANTHER	PTHR33966	PROTEIN ODR-4 HOMOLOG	coord: 49..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00415-RA	Carg00415-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008104	protein localization
cellular_component	GO:0016021	integral component of membrane