CaUC11G203340.1 (mRNA) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAAGAGCAAGGACGATATCACTTACGGTGCTGCTCAAGCGAAATTATCCGAAGACGAAGCCCTAAGAGTCGCTTACAAGCACGGCACGCCGCTCGAATCGGGGAAAATTTCAGACTCGGATACCGTCGATCTCTTTTCCAGTGCGCGCAACATTTCTCAAGATACTTCTGCCGGTCGTTCTTCCGCCGCCGCTGCTCAATCAATTTCATCCAATCAGTTGCGGCGCGGAGACGATACTAATGATGAAGGCGGGACAGGATGCGATACTGCCGATCCTTCCGCCGGCCGCCGCTTCGGTTGA ATGGCGAAGAGCAAGGACGATATCACTTACGGTGCTGCTCAAGCGAAATTATCCGAAGACGAAGCCCTAAGAGTCGCTTACAAGCACGGCACGCCGCTCGAATCGGGGAAAATTTCAGACTCGGATACCGTCGATCTCTTTTCCAGTGCGCGCAACATTTCTCAAGATACTTCTGCCGGTCGTTCTTCCGCCGCCGCTGCTCAATCAATTTCATCCAATCAGTTGCGGCGCGGAGACGATACTAATGATGAAGGCGGGACAGGATGCGATACTGCCGATCCTTCCGCCGGCCGCCGCTTCGGTTGA ATGGCGAAGAGCAAGGACGATATCACTTACGGTGCTGCTCAAGCGAAATTATCCGAAGACGAAGCCCTAAGAGTCGCTTACAAGCACGGCACGCCGCTCGAATCGGGGAAAATTTCAGACTCGGATACCGTCGATCTCTTTTCCAGTGCGCGCAACATTTCTCAAGATACTTCTGCCGGTCGTTCTTCCGCCGCCGCTGCTCAATCAATTTCATCCAATCAGTTGCGGCGCGGAGACGATACTAATGATGAAGGCGGGACAGGATGCGATACTGCCGATCCTTCCGCCGGCCGCCGCTTCGGTTGA MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSARNISQDTSAGRSSAAAAQSISSNQLRRGDDTNDEGGTGCDTADPSAGRRFG Homology
BLAST of CaUC11G203340.1 vs. NCBI nr
Match: XP_038900165.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120087290 [Benincasa hispida]) HSP 1 Score: 173.7 bits (439), Expect = 8.0e-40 Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. NCBI nr
Match: XP_008444288.1 (PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo] >ADN33756.1 seed maturation protein [Cucumis melo subsp. melo] >KAA0052324.1 seed maturation protein [Cucumis melo var. makuwa] >TYK01884.1 seed maturation protein [Cucumis melo var. makuwa]) HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37 Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. NCBI nr
Match: KAG6607969.1 (hypothetical protein SDJN03_01311, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 160.2 bits (404), Expect = 9.2e-36 Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. NCBI nr
Match: KAG7037482.1 (hypothetical protein SDJN02_01109, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 160.2 bits (404), Expect = 9.2e-36 Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. NCBI nr
Match: XP_023525086.1 (uncharacterized protein LOC111788801 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35 Identity = 88/101 (87.13%), Postives = 94/101 (93.07%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. ExPASy Swiss-Prot
Match: Q9LE44 (SEED MATURATION PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=SMP1 PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 2.1e-14 Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. ExPASy TrEMBL
Match: A0A5A7UAD0 (Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001470 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38 Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. ExPASy TrEMBL
Match: E5GBB4 (Seed maturation protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38 Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. ExPASy TrEMBL
Match: A0A1S3BA38 (uncharacterized protein LOC103487654 OS=Cucumis melo OX=3656 GN=LOC103487654 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38 Identity = 91/102 (89.22%), Postives = 93/102 (91.18%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. ExPASy TrEMBL
Match: A0A6J1FNE9 (uncharacterized protein LOC111445841 OS=Cucurbita moschata OX=3662 GN=LOC111445841 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35 Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. ExPASy TrEMBL
Match: A0A6J1IVM5 (uncharacterized protein LOC111480360 OS=Cucurbita maxima OX=3661 GN=LOC111480360 PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.9e-35 Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0
BLAST of CaUC11G203340.1 vs. TAIR 10
Match: AT3G12960.1 (unknown protein; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15 Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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