CaUC09G175410.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G175410.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 34692872 .. 34693696 (-)
Sequence length222
RNA-Seq ExpressionCaUC09G175410.1
SyntenyCaUC09G175410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTCTGTATTTAGAGAAGAAGGCATACCTATCTGCGGTTCAGTAGAACTCGAGAACTTCCCCTTTTTAGACCAAAGCCAGATCTTCGAAACAGAATAACTCTCTCCTTTAGCTACACTATTAAGCTTCTTTCCATCCAAATCTGCTTGGACTGGAGAGATGCTGTTTGATTCCGTCTCTTTAGAGGGCTGTTTATTATCACCCTCTCGTCGAGCTTTAGACAAGGCAATTCTGAGGTCAGCGTCTATAACAACGTATTGATACGATCCCATCGAATAACATCTCCTAGCATCCAAATTACTACTACTGGTCTCTCCAACTTCAGTCTCTACAGCCTCCACCGCGTCCATCCGCCTGAATTTTCCGAGTCTCACTGGGAAAACCCCCTTTTCATTCACTACCTCTTGAATTTCCATTGTTTTCTGACAATTAGGCAACCTGTGGTCTGCATTACCAGCACATTCATCTTCTTCTCCCAGATCATCGAAATCGTACATCGGATTTTCAATCGAAAAACCAGGATTAAAGAGAGTTCCTCGACAAAGAGGACACGTCGAATTTGACAAGAGCCAAGTGTCTATACAATTGACATGGAAGGCATGGCTGCACATAGGAAGTAATCTGAGTTGGTCCTTCTCAGAAAACTCACACAAACAAACAGCACAATCAAATGGCTCCTTAAGACCCACAATTTCTTTATACTGAAAAACAGGAAGTGCATCTATAAAAGCTTGATCTAAACCAGAATCATGGAGATGGAAGAGCTGCTGCAGCTGTCTCTGAAGTGCATCAGAAGGAGAAAGTTCTGGGTTTCTGTTAG

mRNA sequence

ATGGCAAGCAACCTGTGGTCTGCATTACCAGCACATTCATCTTCTTCTCCCAGATCATCGAAATCGTACATCGGATTTTCAATCGAAAAACCAGGATTAAAGAGAGTTCCTCGACAAAGAGGACACGTCGAATTTGACAAGAGCCAAAATCATGGAGATGGAAGAGCTGCTGCAGCTGTCTCTGAAGTGCATCAGAAGGAGAAAGTTCTGGGTTTCTGTTAG

Coding sequence (CDS)

ATGGCAAGCAACCTGTGGTCTGCATTACCAGCACATTCATCTTCTTCTCCCAGATCATCGAAATCGTACATCGGATTTTCAATCGAAAAACCAGGATTAAAGAGAGTTCCTCGACAAAGAGGACACGTCGAATTTGACAAGAGCCAAAATCATGGAGATGGAAGAGCTGCTGCAGCTGTCTCTGAAGTGCATCAGAAGGAGAAAGTTCTGGGTTTCTGTTAG

Protein sequence

MASNLWSALPAHSSSSPRSSKSYIGFSIEKPGLKRVPRQRGHVEFDKSQNHGDGRAAAAVSEVHQKEKVLGFC
Homology
The following BLAST results are available for this feature:
BLAST of CaUC09G175410.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC09G175410.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC09G175410.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC09G175410.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC09G175410CaUC09G175410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC09G175410.1-exonCaUC09G175410.1-exon-Ciama_Chr09:34692872..34692946exon
CaUC09G175410.1-exonCaUC09G175410.1-exon-Ciama_Chr09:34693119..34693258exon
CaUC09G175410.1-exonCaUC09G175410.1-exon-Ciama_Chr09:34693690..34693696exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC09G175410.1-cdsCaUC09G175410.1-cds-Ciama_Chr09:34692872..34692946CDS
CaUC09G175410.1-cdsCaUC09G175410.1-cds-Ciama_Chr09:34693119..34693258CDS
CaUC09G175410.1-cdsCaUC09G175410.1-cds-Ciama_Chr09:34693690..34693696CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC09G175410.1CaUC09G175410.1-proteinpolypeptide