CaUC09G172970.1 (mRNA) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCAAGGACGCCTCTATAGGTGCGACCGTGGCGACAGACAACTTTGTAGGTGCAGCGAACGATTCTGTAGGTGCGACGATGGCGATGGACAAGCAGGATGATGGTGTGGTTGGTGACTCATCCTGGTGTGGTTGGTGACTTTAAGAGTGAGGGTGAGAGGAAGAGGAAATCGTGAGGGAGAGGGAGAGTGAGAGGAAGAGCTTGAGAATGGAAAAAAAAAAGTGGGGGAAATTCAAAAAAAGATGAGAGAAACAAAATGTGAGAAAAAATAAAGTTGGTTAGGGTTTCAAAAAAGTGGGGGCAAAACTAAAATCTGGACTTAAGGGTTTTCTACCCACCCAATTTACATTGACAAATACTAAAACTTTCTAGCCACGCATGTGCGTGGGTAGAAACTAAAATAAGTATCGACAGAAACCTAAACCTAATGATTTTCACTAAAACCACACAACTTTTTGCCCATGCATATATTTTCATCGGCAGAAATGATATGCCTACACATTGAAAATTCGTTGGTAGAAATTAGCTCTGCCGACATCTTTTGTTGTGTTGGTAGAAAAAACCGTTGGCAGAGACGAAAGTTCTTGTAGTTAGGTCATTTTACTAGCTCACAATGGGTAAAACAAGGATCAAGAGTTTTTAAAAAAATTGAAATGTTTAAAATTAATTAAAGAAAATTTATGTTATTTGTATAAAATACAATTAATATAATGTATAACGATATATTATAATATAAAGTTAGTTTTGAATGAAATTAAAAAAATGAAACTATATAATATGAGAGTATAAATGTATTTGAATAAAATTAAAATAATAAATTAATATGAATAAGATTCATATTAAAACTATAGGTTATGAGGGAGAAGGGTATTTGAATATGATTCAAATAAATATTTAATTAAATATGAGATGTTGAATTAAATATATTGATTAATTAATTAATAATTAATACAATTATTTATTAATTAAATGTTCTTAAATTAAATTAAATTAAATTAAATTAAATTAAAAAGAGAAATAAGTCTCTAACATTGCAGGGTGTGGGGAGTTACTCCCCCTCTCTCACTTTAAATTGTAGTGAATCTGATATATTGAGGTTACCATTTTTTTTACGTGAAAAAAATACGGATAACTTCTTTCTCTTTCTCTCAACTTCTCTCACATTCACAAAACTCAGAGAACAAATTCTCTTTCTTTTTCCTGTCTCTTTCAAAAGGAGGTTCCCATACAACTGATCTGTGCTAGAGAATAGAAGGAAAGGTCTTTTGGTAGCATCTTGGTACGAGATTGATTGTTGAGGAGGTCCATATGTTGAGAAGAGAAAAGAATTGTAGCTAGAATTTGAAGAAGAGTCTTTGAAGGGTAATTTCTTTTCCTCAAACACTTCTTTGGAGAAAGCATGCTTAATTCTTTTGTATGTTTTTTTTTTCCTCCTGTGTATTAATTCTTAAAAAATAATAATAATAAAGTAAAGTGATCAATCACTTTCATTGTGGAATTGGATCCCTTCATGTTTAACCCCATCAGCGAGATTACTTACTAAGTATTTTTTAATACTCACTACCGCATATTTTTTTCTAGGTAAGGGTAAAGGCTTGCGAGGAAGGTAACTAGTTGTTAATTGTGCTATCAAACCGTGTCTAATTGAGTTTTCGCTTTGCATATGCTTTGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNTTGTAAACTTTTATAATTTATTTTTCCTTGTTTTTGGTGGGATCCAGAAAATAGAACCTTATTCTTCTTTTAGTGGGTTTGATTTATTCGTCTTAAATATTTGATTTTATCGTTTTAAATAAATTTTGATTTTGCATTCATGAATAACACTAGTACATTTTTCTTGAGAAAAATTAGGTCGTTACAATTACACTTGAAATTGTGAGATTTTGAATGTGTTAATGTACTAATGATATGCTTGAACAAATTGTATGCTTAATCTTTCATATATACAAGTCATTTAACTAATATACTACAAGTTATAGTTTACATTTAGAACGTTAGTAATACAACTAATATAGCAAATTAAATATAACTCTGATATTGTAATGACCCCAAGTTTTTTTTTTTATATTTTTAATTAACATAAATTAAGATAATTACTCCTAATTCATAATGGATTATTTTATAAAAAAATATAACTGATGCTTCTGTTAAAAATAAGTCTTATCATGCTAAATAAAACTTAAACTAAAAATTTTAGCAGTAGAAATCATAAAATAACAATATGTATTTAATAAGAAGTAAAAATAAAACAAAAAATATGGTTCTAAATTAATTAAACTAAACTTTGGCAAATTGTCTCATGGCTCCGTAGAAAATGCTTCTTTTATGCCTCGGGTATTAGCTACAACTCGTATTCATTCAGCCATTTTACCCCTTCTTCATTCTTGGACCTCATTTCTGCATATTGTGACTTTTTCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTTTGCTATAGATGATACACAAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAGAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTAATCCTCAGCGAACTCATCATCATCTACATGACTATTTGAAAAATGTAAAACCACACGAGGTAATATAAAAATACTTTGTAGGTGACTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTACGTAG ATGAGCAAGGACGCCTCTATAGGTGCGACCGTGGCGACAGACAACTTTGTAGGTGCAGCGAACGATTCTGTAGGTGCGACGATGGCGATGGACAAGCAGGATGATGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTTTGCTATAGATGATACACAAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAGAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTGACTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTACGTAG ATGAGCAAGGACGCCTCTATAGGTGCGACCGTGGCGACAGACAACTTTGTAGGTGCAGCGAACGATTCTGTAGGTGCGACGATGGCGATGGACAAGCAGGATGATGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTTTGCTATAGATGATACACAAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAGAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTGACTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTACGTAG MSKDASIGATVATDNFVGAANDSVGATMAMDKQDDGTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVHLRLHDYLKNVKPHEVVFEKCHGDSYHKKASHIMLVYVFISLIGRHAT Homology
BLAST of CaUC09G172970.1 vs. NCBI nr
Match: YP_009561108.1 (cytochrome c maturation Fn [Chenopodium quinoa] >QAR49070.1 cytochrome c maturation Fn [Chenopodium quinoa]) HSP 1 Score: 135.2 bits (339), Expect = 4.7e-28 Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. NCBI nr
Match: QEM01536.1 (cytochrome C biogenesis factor N [Solanum tuberosum] >QPF97150.1 cytochrome c biogenesis factor N [Solanum ahanhuiri] >QPF97424.1 cytochrome c biogenesis factor N [Solanum tuberosum subsp. andigenum] >QPF97565.1 cytochrome c biogenesis factor N [Solanum x juzepczukii] >QPF97637.1 cytochrome c biogenesis factor N [Solanum chaucha] >QPF97871.1 cytochrome c biogenesis factor N [Solanum bukasovii]) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. NCBI nr
Match: YP_009682049.1 (cytochrome c biogenesis FN [Physochlaina orientalis] >QDQ38362.1 cytochrome c biogenesis FN [Physochlaina orientalis]) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. NCBI nr
Match: ATW72861.1 (ccmFN [Solanum commersonii] >AUS83394.1 CcmFN [Solanum tuberosum] >QPF97020.1 cytochrome c biogenesis factor N [Solanum stenotomum subsp. goniocalyx] >QPF97227.1 cytochrome c biogenesis factor N [Solanum phureja] >QPF97294.1 cytochrome c biogenesis factor N [Solanum stenotomum subsp. stenotomum] >QPF97357.1 cytochrome c biogenesis factor N [Solanum bukasovii] >QPF97710.1 cytochrome c biogenesis factor N [Solanum x curtilobum]) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. NCBI nr
Match: YP_009430473.1 (cytochrome c maturation protein CcmFN [Solanum lycopersicum] >YP_009430483.1 cytochrome c maturation protein CcmFN [Solanum pennellii] >ATD51578.1 cytochrome c maturation protein CcmFN [Solanum lycopersicum] >ATD51592.1 cytochrome c maturation protein CcmFN [Solanum lycopersicum] >ATD51632.1 cytochrome c maturation protein CcmFN [Solanum pennellii]) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q04647 (Probable cytochrome c biosynthesis protein OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28 Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q04648 (Probable cytochrome c biosynthesis protein OS=Oenothera berteroana OX=3950 PE=2 SV=3) HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28 Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q33884 (Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Fragment) OS=Arabidopsis thaliana OX=3702 GN=CCMFN2 PE=1 SV=2) HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26 Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: P36180 (Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha OX=3197 GN=YMF4 PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 8.3e-12 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q9I3N2 (Cytochrome c-type biogenesis protein CcmF OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=ccmF PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04 Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A410KLK0 (Cytochrome c maturation Fn OS=Chenopodium quinoa OX=63459 GN=ccmFn PE=3 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28 Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A290WKZ9 (CcmFn OS=Solanum lycopersicum OX=4081 GN=ccmFN PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A7S9H4F1 (Cytochrome c biogenesis factor N OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=ccmFN PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A0C5B9X0 (Cytochrome c biogenesis FN OS=Nicotiana tabacum/Hyoscyamus niger cybrid OX=1520274 GN=ccmFN PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A7S9H578 (Cytochrome c biogenesis factor N OS=Solanum tuberosum subsp. andigenum OX=80418 GN=ccmFN PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28 Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. TAIR 10
Match: AT2G07768.1 (Cytochrome C assembly protein ) HSP 1 Score: 126.3 bits (316), Expect = 2.0e-29 Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of CaUC09G172970.1 vs. TAIR 10
Match: ATMG00960.1 (Cytochrome C assembly protein ) HSP 1 Score: 126.3 bits (316), Expect = 2.0e-29 Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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