CaUC09G172970.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G172970.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cytochrome c biogenesis FN
Location	Ciama_Chr09: 29463267 .. 29466182 (+)
Sequence length	450
RNA-Seq Expression	CaUC09G172970.1
Synteny	CaUC09G172970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGGACGCCTCTATAGGTGCGACCGTGGCGACAGACAACTTTGTAGGTGCAGCGAACGATTCTGTAGGTGCGACGATGGCGATGGACAAGCAGGATGATGGTGTGGTTGGTGACTCATCCTGGTGTGGTTGGTGACTTTAAGAGTGAGGGTGAGAGGAAGAGGAAATCGTGAGGGAGAGGGAGAGTGAGAGGAAGAGCTTGAGAATGGAAAAAAAAAAGTGGGGGAAATTCAAAAAAAGATGAGAGAAACAAAATGTGAGAAAAAATAAAGTTGGTTAGGGTTTCAAAAAAGTGGGGGCAAAACTAAAATCTGGACTTAAGGGTTTTCTACCCACCCAATTTACATTGACAAATACTAAAACTTTCTAGCCACGCATGTGCGTGGGTAGAAACTAAAATAAGTATCGACAGAAACCTAAACCTAATGATTTTCACTAAAACCACACAACTTTTTGCCCATGCATATATTTTCATCGGCAGAAATGATATGCCTACACATTGAAAATTCGTTGGTAGAAATTAGCTCTGCCGACATCTTTTGTTGTGTTGGTAGAAAAAACCGTTGGCAGAGACGAAAGTTCTTGTAGTTAGGTCATTTTACTAGCTCACAATGGGTAAAACAAGGATCAAGAGTTTTTAAAAAAATTGAAATGTTTAAAATTAATTAAAGAAAATTTATGTTATTTGTATAAAATACAATTAATATAATGTATAACGATATATTATAATATAAAGTTAGTTTTGAATGAAATTAAAAAAATGAAACTATATAATATGAGAGTATAAATGTATTTGAATAAAATTAAAATAATAAATTAATATGAATAAGATTCATATTAAAACTATAGGTTATGAGGGAGAAGGGTATTTGAATATGATTCAAATAAATATTTAATTAAATATGAGATGTTGAATTAAATATATTGATTAATTAATTAATAATTAATACAATTATTTATTAATTAAATGTTCTTAAATTAAATTAAATTAAATTAAATTAAATTAAAAAGAGAAATAAGTCTCTAACATTGCAGGGTGTGGGGAGTTACTCCCCCTCTCTCACTTTAAATTGTAGTGAATCTGATATATTGAGGTTACCATTTTTTTTACGTGAAAAAAATACGGATAACTTCTTTCTCTTTCTCTCAACTTCTCTCACATTCACAAAACTCAGAGAACAAATTCTCTTTCTTTTTCCTGTCTCTTTCAAAAGGAGGTTCCCATACAACTGATCTGTGCTAGAGAATAGAAGGAAAGGTCTTTTGGTAGCATCTTGGTACGAGATTGATTGTTGAGGAGGTCCATATGTTGAGAAGAGAAAAGAATTGTAGCTAGAATTTGAAGAAGAGTCTTTGAAGGGTAATTTCTTTTCCTCAAACACTTCTTTGGAGAAAGCATGCTTAATTCTTTTGTATGTTTTTTTTTTCCTCCTGTGTATTAATTCTTAAAAAATAATAATAATAAAGTAAAGTGATCAATCACTTTCATTGTGGAATTGGATCCCTTCATGTTTAACCCCATCAGCGAGATTACTTACTAAGTATTTTTTAATACTCACTACCGCATATTTTTTTCTAGGTAAGGGTAAAGGCTTGCGAGGAAGGTAACTAGTTGTTAATTGTGCTATCAAACCGTGTCTAATTGAGTTTTCGCTTTGCATATGCTTTGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNTTGTAAACTTTTATAATTTATTTTTCCTTGTTTTTGGTGGGATCCAGAAAATAGAACCTTATTCTTCTTTTAGTGGGTTTGATTTATTCGTCTTAAATATTTGATTTTATCGTTTTAAATAAATTTTGATTTTGCATTCATGAATAACACTAGTACATTTTTCTTGAGAAAAATTAGGTCGTTACAATTACACTTGAAATTGTGAGATTTTGAATGTGTTAATGTACTAATGATATGCTTGAACAAATTGTATGCTTAATCTTTCATATATACAAGTCATTTAACTAATATACTACAAGTTATAGTTTACATTTAGAACGTTAGTAATACAACTAATATAGCAAATTAAATATAACTCTGATATTGTAATGACCCCAAGTTTTTTTTTTTATATTTTTAATTAACATAAATTAAGATAATTACTCCTAATTCATAATGGATTATTTTATAAAAAAATATAACTGATGCTTCTGTTAAAAATAAGTCTTATCATGCTAAATAAAACTTAAACTAAAAATTTTAGCAGTAGAAATCATAAAATAACAATATGTATTTAATAAGAAGTAAAAATAAAACAAAAAATATGGTTCTAAATTAATTAAACTAAACTTTGGCAAATTGTCTCATGGCTCCGTAGAAAATGCTTCTTTTATGCCTCGGGTATTAGCTACAACTCGTATTCATTCAGCCATTTTACCCCTTCTTCATTCTTGGACCTCATTTCTGCATATTGTGACTTTTTCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTTTGCTATAGATGATACACAAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAGAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTAATCCTCAGCGAACTCATCATCATCTACATGACTATTTGAAAAATGTAAAACCACACGAGGTAATATAAAAATACTTTGTAGGTGACTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTACGTAG

mRNA sequence

ATGAGCAAGGACGCCTCTATAGGTGCGACCGTGGCGACAGACAACTTTGTAGGTGCAGCGAACGATTCTGTAGGTGCGACGATGGCGATGGACAAGCAGGATGATGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTTTGCTATAGATGATACACAAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAGAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTGACTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTACGTAG

Coding sequence (CDS)

ATGAGCAAGGACGCCTCTATAGGTGCGACCGTGGCGACAGACAACTTTGTAGGTGCAGCGAACGATTCTGTAGGTGCGACGATGGCGATGGACAAGCAGGATGATGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTTTGCTATAGATGATACACAAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCAATGATTCTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAGAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCTACATGACTATTTGAAAAATGTAAAACCGCACGAGGTAGTATTTGAAAAATGTCATGGTGACTCCTATCATAAGAAAGCTTCACACATCATGCTTGTATACGTATTCATATCCTTGATTGGGCGTCATGCTACGTAG

Protein sequence

MSKDASIGATVATDNFVGAANDSVGATMAMDKQDDGTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVHLRLHDYLKNVKPHEVVFEKCHGDSYHKKASHIMLVYVFISLIGRHAT

Homology

[Close]

BLAST of CaUC09G172970.1 vs. NCBI nr
Match: YP_009561108.1 (cytochrome c maturation Fn [Chenopodium quinoa] >QAR49070.1 cytochrome c maturation Fn [Chenopodium quinoa])

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-28
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 496 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 555

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEK 122
           ARSTLVHLR   +L   +PH ++  K
Sbjct: 556 ARSTLVHLR---HLARAQPHPLMLWK 578

[Close]

BLAST of CaUC09G172970.1 vs. NCBI nr
Match: QEM01536.1 (cytochrome C biogenesis factor N [Solanum tuberosum] >QPF97150.1 cytochrome c biogenesis factor N [Solanum ahanhuiri] >QPF97424.1 cytochrome c biogenesis factor N [Solanum tuberosum subsp. andigenum] >QPF97565.1 cytochrome c biogenesis factor N [Solanum x juzepczukii] >QPF97637.1 cytochrome c biogenesis factor N [Solanum chaucha] >QPF97871.1 cytochrome c biogenesis factor N [Solanum bukasovii])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 515 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 574

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 575 ARSTLVHLR--HSARAQKVGLIVFQACSG 601

[Close]

BLAST of CaUC09G172970.1 vs. NCBI nr
Match: YP_009682049.1 (cytochrome c biogenesis FN [Physochlaina orientalis] >QDQ38362.1 cytochrome c biogenesis FN [Physochlaina orientalis])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 491 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 550

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 551 ARSTLVHLR--HSARAQKVGLIVFQACSG 577

[Close]

BLAST of CaUC09G172970.1 vs. NCBI nr
Match: ATW72861.1 (ccmFN [Solanum commersonii] >AUS83394.1 CcmFN [Solanum tuberosum] >QPF97020.1 cytochrome c biogenesis factor N [Solanum stenotomum subsp. goniocalyx] >QPF97227.1 cytochrome c biogenesis factor N [Solanum phureja] >QPF97294.1 cytochrome c biogenesis factor N [Solanum stenotomum subsp. stenotomum] >QPF97357.1 cytochrome c biogenesis factor N [Solanum bukasovii] >QPF97710.1 cytochrome c biogenesis factor N [Solanum x curtilobum])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 501 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 560

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 561 ARSTLVHLR--HSARAQKVGLIVFQACSG 587

[Close]

BLAST of CaUC09G172970.1 vs. NCBI nr
Match: YP_009430473.1 (cytochrome c maturation protein CcmFN [Solanum lycopersicum] >YP_009430483.1 cytochrome c maturation protein CcmFN [Solanum pennellii] >ATD51578.1 cytochrome c maturation protein CcmFN [Solanum lycopersicum] >ATD51592.1 cytochrome c maturation protein CcmFN [Solanum lycopersicum] >ATD51632.1 cytochrome c maturation protein CcmFN [Solanum pennellii])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 501 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 560

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 561 ARSTLVHLR--HSARAQKVGLIVFQACSG 587

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q04647 (Probable cytochrome c biosynthesis protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GT SIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMV+
Sbjct: 496 GTSSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVM 555

Query: 96  ARSTLVHLR 105
           ARSTLVHLR
Sbjct: 556 ARSTLVHLR 564

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q04648 (Probable cytochrome c biosynthesis protein OS=Oenothera berteroana OX=3950 PE=2 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLA VHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTY+KEMVV
Sbjct: 494 GTFSIRSGLLASVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYQKEMVV 553

Query: 96  ARSTLVHLR 105
           ARSTLVHLR
Sbjct: 554 ARSTLVHLR 562

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q33884 (Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Fragment) OS=Arabidopsis thaliana OX=3702 GN=CCMFN2 PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLA VHSFA DDT+GIFLW FFLLMTGI MILF QMKQQASVRRTYKKEMVV
Sbjct: 120 GTFSIRSGLLASVHSFATDDTRGIFLWWFFLLMTGIFMILFYQMKQQASVRRTYKKEMVV 179

Query: 96  ARSTLVHLR 105
           ARSTLVHLR
Sbjct: 180 ARSTLVHLR 188

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: P36180 (Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha OX=3197 GN=YMF4 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.3e-12
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVR 87
           GTF +RSGLLA VHSFA D T+GIFLW FFLL+T IS + F +MKQQ+S +
Sbjct: 395 GTFFVRSGLLASVHSFATDSTRGIFLWCFFLLITSISFLFFFKMKQQSSTK 445

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot
Match: Q9I3N2 (Cytochrome c-type biogenesis protein CcmF OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=ccmF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFS 78
           GTF +RSG+L  VH+FA D  +G+F+  F LL+ G S+ LF+
Sbjct: 290 GTFLVRSGVLTSVHAFASDPERGVFILAFLLLVVGGSLTLFA 331

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A410KLK0 (Cytochrome c maturation Fn OS=Chenopodium quinoa OX=63459 GN=ccmFn PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 496 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 555

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEK 122
           ARSTLVHLR   +L   +PH ++  K
Sbjct: 556 ARSTLVHLR---HLARAQPHPLMLWK 578

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A290WKZ9 (CcmFn OS=Solanum lycopersicum OX=4081 GN=ccmFN PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 501 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 560

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 561 ARSTLVHLR--HSARAQKVGLIVFQACSG 587

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A7S9H4F1 (Cytochrome c biogenesis factor N OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=ccmFN PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 501 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 560

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 561 ARSTLVHLR--HSARAQKVGLIVFQACSG 587

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A0C5B9X0 (Cytochrome c biogenesis FN OS=Nicotiana tabacum/Hyoscyamus niger cybrid OX=1520274 GN=ccmFN PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 491 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 550

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 551 ARSTLVHLR--HSARAQKVGLIVFQACSG 577

[Close]

BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL
Match: A0A7S9H578 (Cytochrome c biogenesis factor N OS=Solanum tuberosum subsp. andigenum OX=80418 GN=ccmFN PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV
Sbjct: 515 GTFSIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 574

Query: 96  ARSTLVHLRLHDYLKNVKPHEVVFEKCHG 125
           ARSTLVHLR     +  K   +VF+ C G
Sbjct: 575 ARSTLVHLR--HSARAQKVGLIVFQACSG 601

[Close]

BLAST of CaUC09G172970.1 vs. TAIR 10
Match: AT2G07768.1 (Cytochrome C assembly protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-29
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLW FFLLMTGISMILF QMKQQASVRRTYKKEMVV
Sbjct: 71  GTFSIRSGLLAPVHSFATDDTRGIFLWWFFLLMTGISMILFYQMKQQASVRRTYKKEMVV 130

Query: 96  ARSTLVHLR 105
           ARSTLVHLR
Sbjct: 131 ARSTLVHLR 139

[Close]

BLAST of CaUC09G172970.1 vs. TAIR 10
Match: ATMG00960.1 (Cytochrome C assembly protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-29
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 36  GTFSIRSGLLAPVHSFAIDDTQGIFLWRFFLLMTGISMILFSQMKQQASVRRTYKKEMVV 95
           GTFSIRSGLLAPVHSFA DDT+GIFLW FFLLMTGISMILF QMKQQASVRRTYKKEMVV
Sbjct: 120 GTFSIRSGLLAPVHSFATDDTRGIFLWWFFLLMTGISMILFYQMKQQASVRRTYKKEMVV 179

Query: 96  ARSTLVHLR 105
           ARSTLVHLR
Sbjct: 180 ARSTLVHLR 188

The following BLAST results are available for this feature:

BLAST of CaUC09G172970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009561108.1	4.7e-28	82.56	cytochrome c maturation Fn [Chenopodium quinoa] >QAR49070.1 cytochrome c maturat...	[more]
QEM01536.1	1.0e-27	80.90	cytochrome C biogenesis factor N [Solanum tuberosum] >QPF97150.1 cytochrome c bi...	[more]
YP_009682049.1	1.0e-27	80.90	cytochrome c biogenesis FN [Physochlaina orientalis] >QDQ38362.1 cytochrome c bi...	[more]
ATW72861.1	1.0e-27	80.90	ccmFN [Solanum commersonii] >AUS83394.1 CcmFN [Solanum tuberosum] >QPF97020.1 cy...	[more]
YP_009430473.1	1.0e-27	80.90	cytochrome c maturation protein CcmFN [Solanum lycopersicum] >YP_009430483.1 cyt...	[more]

BLAST of CaUC09G172970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04647	1.3e-28	94.20	Probable cytochrome c biosynthesis protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q04648	1.7e-28	94.20	Probable cytochrome c biosynthesis protein OS=Oenothera berteroana OX=3950 PE=2 ...	[more]
Q33884	1.2e-26	91.30	Cytochrome c biogenesis CcmF N-terminal-like mitochondrial protein 2 (Fragment) ...	[more]
P36180	8.3e-12	66.67	Probable cytochrome c biosynthesis protein OS=Marchantia polymorpha OX=3197 GN=Y...	[more]
Q9I3N2	2.9e-04	50.00	Cytochrome c-type biogenesis protein CcmF OS=Pseudomonas aeruginosa (strain ATCC...	[more]

BLAST of CaUC09G172970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A410KLK0	2.3e-28	82.56	Cytochrome c maturation Fn OS=Chenopodium quinoa OX=63459 GN=ccmFn PE=3 SV=1	[more]
A0A290WKZ9	5.0e-28	80.90	CcmFn OS=Solanum lycopersicum OX=4081 GN=ccmFN PE=3 SV=1	[more]
A0A7S9H4F1	5.0e-28	80.90	Cytochrome c biogenesis factor N OS=Solanum stenotomum subsp. goniocalyx OX=1050...	[more]
A0A0C5B9X0	5.0e-28	80.90	Cytochrome c biogenesis FN OS=Nicotiana tabacum/Hyoscyamus niger cybrid OX=15202...	[more]
A0A7S9H578	5.0e-28	80.90	Cytochrome c biogenesis factor N OS=Solanum tuberosum subsp. andigenum OX=80418 ...	[more]

BLAST of CaUC09G172970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07768.1	2.0e-29	94.20	Cytochrome C assembly protein	[more]
ATMG00960.1	2.0e-29	94.20	Cytochrome C assembly protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003567	Cytochrome c-type biogenesis protein	PRINTS	PR01410	CCBIOGENESIS	coord: 41..57 score: 61.44 coord: 57..76 score: 42.22
IPR003567	Cytochrome c-type biogenesis protein	PANTHER	PTHR43653	CYTOCHROME C ASSEMBLY PROTEIN-RELATED	coord: 36..116
None	No IPR available	PANTHER	PTHR43653:SF1	CYTOCHROME C ASSEMBLY PROTEIN-RELATED	coord: 36..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC09G172970	CaUC09G172970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G172970.1-exon	CaUC09G172970.1-exon-Ciama_Chr09:29463267..29463372	exon
CaUC09G172970.1-exon	CaUC09G172970.1-exon-Ciama_Chr09:29465755..29466018	exon
CaUC09G172970.1-exon	CaUC09G172970.1-exon-Ciama_Chr09:29466103..29466182	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC09G172970.1-cds	CaUC09G172970.1-cds-Ciama_Chr09:29463267..29463372	CDS
CaUC09G172970.1-cds	CaUC09G172970.1-cds-Ciama_Chr09:29465755..29466018	CDS
CaUC09G172970.1-cds	CaUC09G172970.1-cds-Ciama_Chr09:29466103..29466182	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC09G172970.1	CaUC09G172970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0015232	heme transmembrane transporter activity
molecular_function	GO:0020037	heme binding