CaUC08G152050.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G152050.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 23821642 .. 23824350 (-)
Sequence length519
RNA-Seq ExpressionCaUC08G152050.1
SyntenyCaUC08G152050.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGTATGGTTTCACTCTGGGGCGAGCACTGAATATAAAAGGCTTTCACTAATCCACACAGTATAACTGTTTGACTCCTACCAGTCAACATAGTCCAACATTCCCTGGTTTTCAACTCCTTTGAGTTCATGGACTTCAGAGACAAATTGTCCTCCAACTGTTTGCCCTTGTTAACAAGATAGGGGAAGTTTTTTTCTCACTATCTAAATCCTGTACTATTTTGTAAAAATTAGGGTTTCTTTACAGCGGCAACGATGTTCGATTAATTTAGGGTTAATCTATCTTCTTCCTTCCTTCTCAATCACTTGCTCGGAGGAGATTATTCGAGAAGATCTCTAATTTCATGGGACTGGAGTTTGGCTCTTTGGCCAATTTTATATGCCTTAGAGATGAATGCAGTTCCCTAAATCATCTCTTCAACCTCTTCACCCATATTCGCTACGGTTTTTTCCCTCCTTGTGAATATCTTTGTTGAGGCTGATACATAATTTATCATTCTTCAAATCACATATTTTTCCGTATTCTCTCTATTACATTGAATTTTGAATCTGTATTTTAAGGTTGATTTTTTTCGAAATGATTCCGAGTAGTAATTCAGGCAGCCCCTCTGCAATTTCTATGGCAAAGGAGGCGTTAAACTGCTCGTAGATCGAATCGCTTTTGCTCTTCAGACTTGCTGAGATTTCCTTTGAAGCTGGTCTAGTAAGCCTAAGTACATATGTTTTTAAGTTCTACCGATTTTTAGTCGCGTACTTGGTTGATTTCTGTTTTAATGTTCTTACCCTTCATAATCTGAGATCATTGGGTGATTAATGATTGGTAAATAAGAATGTACGGAAATTATTCAATGGTTTTTAATAAGTTGTTGCTGGGTCGACCATGGATTTTCTTTCTTTTTTCTTTTTTCCTTTTTCTCTTCTTGGGTTGTGAAAGGGGTTAGATCATGGTTTGTCGAATCAATACCTGAATGCAAAATATAAAGAATATCAAACAATATGTTATTTTTAAAACACCCACACAACAAATTAAAATATCAAACCATGTGTTATTCACTCACTCACCATGGCCACACAAGTACCAGATTGAGGAACAAGCCATCCAATTGATCCTACGGAAGTTGTATTTTGGTGTCCATGGATCCTGCAGCATTCATGGCTTTCGGCCTGTTATGTCTCCTAAACAGGGAATAGAGGATATGTTGGTTTGTGATCTAATTACGGAAGCTGGTCGTTGGAATGTTCCTTGACTGAGACAACTATTATGGGATGAGGATGTTGCAATATCTGCTTGAATCCTATTTGCAAGACAGTGAGATTGGATCAACAATAAATGCAGATACATCATAAAGTGAAGATTATGATGTGGACATTGTGCAATAATATCCTTCAAATAAAAACCTCTATCAGAGACACATTACAGGTAACGGATGGTGTGTGTTGTGTTGTGGGAAGGAGGAAGTAAGTAACGGAAATACATTTCTAAGATTCCAGAAAGCAAAACATCTTTGGAAGCTGTTAAATCACCCCTTTTTGAGTTTGGTTCTTTGAAAATCCCCTTCCAAGAAGTGTGCTGCAAGGTGGTTTTGGGTCAAGTGAAAGAACATATTTTATTTAAAATATAAAACATAAAATTTAAATAAAATATGTTAATTTAGACTATCAACAACTAGAACTATCATTTCAACTACTGTGCCCACTGGGCAGTGATTCATATAAGTATATAATCGTATAGGCATGGGTAGTATAGTGATCCAAAGGAGTGCACAATCAAAGGCTTTATATCATATTTATATCCTTAAAATCCATTATAGTAATCATACAAAATGCATACATAAAACTGTCATTTTACATGATAATTCTGATAATTCAATTAATCAATGTCGATTAACATATTTTTGACTTACTAGGAAGCTCATGAGAGGAACAAATTTTACATAAACAGAGAATGTTAAGAAATTTTTAAAAATAGAAAACGTTAACAAATTTAAGCTTGCTTAAGCTAAGAGTACCTAAGATTTAAGGAAAAAAAGAAATTTCAAGAGTTGATTCGATTAACAATTTTTTAAAAATATATAAATTTATCACTAAAATCTCCAATGTGTCAACAATTTTTGAATTAAAAATATATAAATTTATCATTAAAATCTCATAAATATAAAGTAATCAAATTTTAAATGAAGAGGAATATATATATGCTGGAATGGGATGGGAACATATGACCGAGATGAGTCTTCGAATGTGATTAATTTGTGCTTACTGAGATTGGTTTTCTCACTTTAGTAGCTTTTGCTTGTGTTGTGAAGAGGAGGGAGGTTAGAGTATAGTTGGCCAAATAAATACCTCAATTATAAAGAATCTCTTAAAGCACCCACGCAACAAATTCTTAAAAAGATGATTGTTATTTTAGACTATCAAATAATATGTTATTCACCCCTCGCCTTGGGCACACAAAAGTTCCAAAACTGATCGAGGAGCAAGCAATCCGATTCTTCGAAAATAGTTGGGATGAGGACGTGCACAAGATTTGCTCGATTCCTATTTGCAAGACAGTGAGATCAAATAAAATGGCTTTGGTACTTTACAACAAATGGAATTTTTTTCCACAAAAAGTGCATATAGGTTGTTTGTTGATTGTAACCAGAATAGAACCTTCAAGATGGAGGCTGTTTGGGTGAGAATGCGTATAGAGGGTGGAATGGAAACGTGA

mRNA sequence

ATGAACTTCCCTAAATCATCTCTTCAACCTCTTCACCCATATTCGCTACGGTTGATTTTTTTCGAAATGATTCCGAGTAGTAATTCAGGCAGCCCCTCTGCAATTTCTATGGCAAAGGAGGCGTTAAACTGCTCACTTGCTGAGATTTCCTTTGAAGCTGGTCTAATACATCATAAAGTGAAGATTATGATGTGGACATTGTGCAATAATATCCTTCAAATAAAAACCTCTATCAGAGACACATTACAGGTAACGGATGGTGTGTGTTGTGTTGTGGGAAGGAGGAAACTATCAAATAATATGTTATTCACCCCTCGCCTTGGGCACACAAAAGTTCCAAAACTGATCGAGGAGCAAGCAATCCGATTCTTCGAAAATAGTTGGGATGAGGACGTGCACAAGATTTGCTCGATTCCTATTTGCAAGACAGTGAGATCAAATAAAATGGCTTTGAATAGAACCTTCAAGATGGAGGCTGTTTGGGTGAGAATGCGTATAGAGGGTGGAATGGAAACGTGA

Coding sequence (CDS)

ATGAACTTCCCTAAATCATCTCTTCAACCTCTTCACCCATATTCGCTACGGTTGATTTTTTTCGAAATGATTCCGAGTAGTAATTCAGGCAGCCCCTCTGCAATTTCTATGGCAAAGGAGGCGTTAAACTGCTCACTTGCTGAGATTTCCTTTGAAGCTGGTCTAATACATCATAAAGTGAAGATTATGATGTGGACATTGTGCAATAATATCCTTCAAATAAAAACCTCTATCAGAGACACATTACAGGTAACGGATGGTGTGTGTTGTGTTGTGGGAAGGAGGAAACTATCAAATAATATGTTATTCACCCCTCGCCTTGGGCACACAAAAGTTCCAAAACTGATCGAGGAGCAAGCAATCCGATTCTTCGAAAATAGTTGGGATGAGGACGTGCACAAGATTTGCTCGATTCCTATTTGCAAGACAGTGAGATCAAATAAAATGGCTTTGAATAGAACCTTCAAGATGGAGGCTGTTTGGGTGAGAATGCGTATAGAGGGTGGAATGGAAACGTGA

Protein sequence

MNFPKSSLQPLHPYSLRLIFFEMIPSSNSGSPSAISMAKEALNCSLAEISFEAGLIHHKVKIMMWTLCNNILQIKTSIRDTLQVTDGVCCVVGRRKLSNNMLFTPRLGHTKVPKLIEEQAIRFFENSWDEDVHKICSIPICKTVRSNKMALNRTFKMEAVWVRMRIEGGMET
Homology
The following BLAST results are available for this feature:
BLAST of CaUC08G152050.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC08G152050.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC08G152050.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC08G152050.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC08G152050CaUC08G152050gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23821642..23821707exon
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23821776..23821941exon
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23822891..23823012exon
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23823646..23823676exon
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23823704..23823787exon
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23823905..23823948exon
CaUC08G152050.1-exonCaUC08G152050.1-exon-Ciama_Chr08:23824345..23824350exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23821642..23821707CDS
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23821776..23821941CDS
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23822891..23823012CDS
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23823646..23823676CDS
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23823704..23823787CDS
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23823905..23823948CDS
CaUC08G152050.1-cdsCaUC08G152050.1-cds-Ciama_Chr08:23824345..23824350CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC08G152050.1CaUC08G152050.1-proteinpolypeptide