CaUC08G142030.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G142030.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNA-binding protein 7
Location	Ciama_Chr08: 2206608 .. 2214602 (+)
Sequence length	877
RNA-Seq Expression	CaUC08G142030.1
Synteny	CaUC08G142030.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGATCGAATGGCTGCACCGTTTACGTAGGTATGTTCATTGATTTTTCTACCCTAATTCGTTTAACCTTTTCGTTTTTCCTCTTATGAGAATTCTGCTGTTTGCGTTTTAGCTTCATGTTTTTACTTCCGTGCAGTTCTGTTTGAAAATTATGCTTTCGGGTGGTCAATTTTATAAGAAGTGTGTTTATTTCTTCTTTCATGTTCTAATATTTGATTTATAGGACATAATACATATCTATTGATTGAGAAAGCTCTGCTTAGATTTTTGTTGGCGGGTTCATAATTGAACTGAAAGGTTGGATTTTTGCAGGTTTTCTTCCTCCCCAACTTTTTCGCTTTCTTGTAAATTTGTTTGATTTCTGTTTATAGCATACTTGATTTGTTGCCTTTAGCTGAAGAGGGTTGGAAGTTGAACTAAATTCGTTTTTGTATTTCTTAGATCTCTTTGATCATCTTCGTTTTTGCTTAACTGGTTCAATCTTAATTTTCACCTATTCCATTGTCGTTTATCTGCTTCTGTTAGGCTTTTCCCCATTTGAGAATTGATGCCAGTTTGTCCTTTGATATTTCTTTAACATAACTAGATGTTCGACTAACTTATTCTTTTGGGGAACTTTTCTTCTTCCTTCAGGGGTGTTTGCCCACCGATTTCATATGTCAACTTCACCAACTTCATTATTGTTTACTATTGAAGTTTGCACATTTATCGAGGAACTCTATCTTCACAACTCTGCACCCCAAACACAGACTTTCTTACTCTTAACATATTAACTCAGACTTTAGACCTCAACTCTGGTGGCCCAGACACCCCTTTGATATTTTGATGCAACATTATCTATTAAAGTGTTTTAGGATGCTGCCAGTCATTTTGAGTTTAAGATGTCACATTTTCTTATGAGTCTGATTTTGTTACTTTCTTCACTTTCTGTAGGTAATTTGGATGAAAGAGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCCGGCAAGCCAAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTAATCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTATGTAATTATTGTTTCTTTCTCAATGCAAATTCTTCATGATCCCCTTTGTTTCTTTTATGTTTGTTTCCTAACTTATTCATATATTGTTTTTATAATTATTTCAAGATTCAATATTCATGTAATATACCACATCTTCTTATTTGACGGATTTTGATCAGTAACCCACTTTGAGATATATATTATTAGTCTTGTAAGATGTGCGGTGCATTTGAAATTTTAGTTTTCTTGACTTTATATAATAATAAAATTAGATCAACTTAACTTTAGTATATTGCATAACTTTTTTGAGGTTTTAGAAATTACATTCCAATCTTATGGTTTTGTTCTTGTTATTTACAGATCTAGTTTGCGTTTAGAAGCAACCTTGTTATCATAATTAATTGATGGGAAGAACCAAGATATTCATGGTTTTGTTCTTTCATCTTCCTCTAGTTTAGTTCATGTCACCAGAACTTTAAATGACTTGGTTGGAAAACCTTTGTCTTCCCAATTATAGAGGATGAACGTGGGCATTAGTACATTATTGACAAACAAAAGAAAAGATGGAAGATTGAAATTACTCACATCACTACAATTAATAGTGACTTTGTTGAAAAACAGAAGAACTTTTGAAGTATGGAGAATGAAGATAGATTCTAAAACATTATTCTCCAAACTTAACTAGGTATCGAATCTTGAAGGAGTGGAAGCGTATGGAGAAACTTAGTTTATGTGCAAGAGTATGGAGAAGCTTATGACAGAGTTTCTTTGGGAAGGGGTGGACGAAGGGAAAGGCTCTCATTTGGTTGGTTGGGCGGTTATTGGGAGATTTGTTAACCAAGGGGGTTAGAGCTCGAAAATTTAAGGTTGCATAACAAAGCTCTGTCGGCTAAATGGCCTTGGCGCTTTCCTCTGAGCCCTTCCTTTCATGTTTTTTGTGTGGTGGGGGACGATAGGATAGTTATTTTTGGGAAGATCAGTGGTGGTGTTAGACCCATCTGCTTTGCGTCTCCTCATTTATATTATCTTTCTTCCTATAAAAATTGTCTTGTTTTTGATTTCTTGGTTTGGTTTGCGAGCTCAGTGTCTTTTTCCTTTGATTTCCATCGTTCTTTGTTCGATAGGGAAGCGATAGAGGTTGCCTCTTTGTTGGCCTTACTTGATGAGTTTAATTTTAGGCTGGGTAGAAGGGATGTTTGCATTTGGAGTCCTAATCCTCTTGAGTGCTTTTCTTGTAAATCTTTTTTTTCCTTGGTTGTTATTGGATCCCTCTCCTGTTAGCAAGTCGGTCTTTGATGTGCCTTGGAGGATTAAGATCCTTAAGAAAGTTAAATTCTTTACTGGCAGGTTTTACTTGTCTGTGTGAACCCTATGGTTAGGCTTTTCAAGAAGAAGTCTTCGCTTATGGGGCCTTTTTGTTGTATTCTAATAGGTCTAAGCTTGATTTTATTTATCAACACGCCTAGGGAGAATTCGAGAGTTCCCCTTCCTCTCCAAGTTCTCAGATAGAGATCAAATTATAATGAAAAATCAGATAATCCTCAACCCCCCACACAATCGTTCACATACCCGAGCCCCCAACAACTAACAAATATTCTCAAGGCCTCACTCCCATAACTAACCATTCTCTCACACGTGCTCATTCCCTCCTTTCCCACGCTTATGTACATAGACTACGGTAATACGAGGTCTATCATTACCCACCCTCCACAGAACTACCTTGTCCTCAGGGTGGAAATCTGCAAATTGTTCCTTGATCACCGTGTCCAGCTCCTAAGTGGCATCAATCAGAATATGTTTTCCCAACAAATTAGGACCTCCATTGCTCCTTCCTCTGTGGGCAAGTTCCGCACTCCTAAGACCTTTGCCGGTTGTAACACATAAGTCAAGTTTGGAGCCAACAAGGGGGAATCGGGAGGATGGGCAGATTATCTTTGTTTGACACGATACTCCTAGGATAATTGTGCAAGCGCACAACTTCTTTCATGAATACAACAGCAACAGAATGTGCAGTGAAAGGGTGTTTAAGTAAAATAAAGTGGGCATATTTAGAAAGCCAATCGACTACCACCATTATTGTATCATACACTACAGATTTTGGCAATCCTTCAATAAAACTCATTGCAATATCATCCCATACCTTGTCCGAGATTGGCAACGCTTGAAGAAGTCTTGCTTGTGCTAATGTGAGGTACTTCACCTGTTGGCAAGTAGAACATTCGGCCACATACATTTGCGCCCGCGCTTTCATTCCTCTCCAATATACCTCCTGTGCCAACCTTTGATAAGTTTTTAGGGTCCCCTGATGGCCACCAATCGGGCTGTTACGTAATTCTCTCAACAAGAGAGGAATAGTGGGCGAGTGGCAGGGAGAATCACCCTTCCTCGAAAGCATAAGAGGTCTCCACCCATTGAGTAACCATTAGGAGCTTGCCGCCCTTCTAATAAAGCTTGTTTTTATCCGCACACACTTGTTCAACAAACGTGGTTGTATTGAGGCCCTCTACCACACTGAGCAAGCCAAACTCCAAGGCTGGTGGGAAACGTGATAACGCATCAGTCGCCAAATTTTCCAATCCTCACTTGTATTCAATGCTAAAATCATAGCCTAACAATTTTTCTATCCAACGCTGGTATTCCCCTACGATCACACGTTGCTCCAACAAGAACTTCAAGCTTTTTTGATTGGTTCAGACTGTAAATCGAGACCCCAACAAGTATGGACACCATTTCCTCTCTGCGAAGACAATCACCATCAATTCCCGCTCATAGATAGCCTTAAATCAGTGGGTTGGTGGCAAGGCTTGACTGAAGTATGCTAAGGGCCTCTTATTTTGCATTAATACAAGTCCCACACCCACCCTAGAGGCGTCTGTTTTGATCACAAAAGGCTCCTCAAAGTTAGGCAGCCCCAAAACTAGAAGTGAACTCATGGGCTGCTTCACCTTTTGGAAAGCCTTCTTAGCAGCTTCACTCCACCCAAAAGTTCCCTTTTTTAAGTAACAGTGTAGATGGCAATGCTATGGATCCGTAATTGGTCATGAACTTCCAGTAATACCCTATCAACCCGAGGAATCCATATAGCCTCCACCTTAGCCAGGTTTGCCGCAACACCTTTTGTCGATACAATATGCCCCAAATACTCAATACTCGAGACCTCGAATTGACATTTTTTAAAGTTTGCCATGGATTTTGATTAACTCTCGGAATTTCCAACACTATAGTAAGATGTCATACGTGATCCTCCGTTGTTTTACTATAGATGACGATGTCGTAAAAGAATACGAGATGAACTTCCGCAAATGAGGTTGCAAAATATTATTCATAATGGCTTGAAAAGTGGAAGGGGTGTTCCGTAGTTCAAATGGCTTCACTAGAAACTTGTAGTGGCCTTCGTGGGTGTGGAAGGCTGTCTTGTGTACGTTCGAAGGTTGCACTCTAATCTGACGGTAGCTTGATTTAAGATCAATCTTCAAAAAGATTGTCGCTCCATACAGCTCGTTTAACAACTCATTCACCACCAGAATTAGATATTTATAAGGTACTGTTGCATTGTTTAGAGCATGGTAATCCACACAAAACTGCCAGCTTCCATCTTTCTTTTTGTCTAGCAGAATCGGGCTTGAGAGCACACTTTGGCTGGGCTGTATGATTCTGGCCAAAACAAATTTCATCTGTTCCGATAACCCATTGATCTTCCCATTAGCTTCCCTGAAGCTGGACTCCATTTTAGATTCCGTTGCCTCTTGTTTCGATTCTACCTCCATCAATTTCTCCTCTAGCACAACTACTCTTGCTTCCATCTTTCCAACCATGCTCGAGAATCACTGCTCTGATACGAATTTGATAGGCCTGAGCTTGATTTTATTTATCAACACGCCTAGGGAGAATTCGAGAGCTCCCTTTCGTTTCCAAGTTCTCATATAAAGACCAAATTACAATGAAAAATAAGAGAATCCCCCCCCCACCCAACCCTTTACAAACTCGAGCCCCTAGCAACTAACAAATATTCTCAGGGGCCCACTCCCATAACTAACAATTCTCTCACACGTGCTCATTCCCTCCTTCCCATGCTTATGTACAGACTCTGGTAATACGAGGTCTATCATATTCTTGGTTGGAAGGTAGAGGAAGACTTGGATCAACTTCACTGGAGTTGTCAGTTTGCGAGATCGGTGTGGAACTGTTTCTTTCAAGAGTTCGGTATCGAGCTAGCTCGCCAAAGAGATATTTGGGATACGATCGAGGAGTTTCTTCTCCATTTGCCTTTCAAAGAGAAAGGTCGTTTTTTATGGTTAGCTGGGGCGTGTGCTATTTTGTGGGATATATGGGGAGAGAGGAATAATTTAGTGTTTAGGGGTGTGAAGAAGGACCATGGTAATGTTTGGTTCCTGGTAAGGTTCCATGTTTCTCTTTTGACTTCGGTCTTGAAGACTTTTTGATATTATCCTCTAGGTAGCATCTTACTTAGTTGGAAACCCTTTCTTTAAGGGGGTTTTGTGAGCTTGTTTTTTTTGTTGCCCTTGTATTCTTTTATTTTTTCTCAATGGAAGCAGTTGTTTCTATGAAAAAATAAGTGAGAATCTATAATTATATATATTTTAAACAATATCTATTTAGTTTTCTAGAAAAAGATATCTTTTAATCTGATTTTGGACGAAATAGGACGACACAAAAATGAAGTGCTAGATAGAAATGTAAAGATTCCTTTCCCGAATATATAATTACTATGGATTATTTTTCAATTATCTACTGTGCGGTTTCATACTTCAGTTTTATATATCCGGTGATTGTGCAAACTTCTTGTGTTAGCTTTGATTATGCGGGTGACTCATTAACTTATAGGAATGACACATAGATTTTGACCTTATGCAAGCAGGTGTCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCGTATATTGTTCCAGGTTACTCTAATGAAATATCTCAGCATTCCAATCACTTGTCAACGTCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTGGAAGGTAATTTTACTTTTCTTTACATTTTGTCTTTGCACTGTTAGTTTCACTAAGAATTGTGTATTTTTACTTTCTTGGCCTTTCCCACATTAGTTCAACAAAAGTTTATTTCTTTTATTCAGCGGTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGTTACGAGTTATCCAGTATACTATCCTCCTTATGATATTTAGAGTAAGGCAGTTAGCGCCTTCCATTTTGGTTAATCTTAATGGTAATTTAAATCTTAGGAGAAGTTGTATCGCTTTGTTGGATGCAAATGGGTTAGTGGTAAATGATATGATATTTGCTATGGAGTAGTTTATGTTACTGAATACAGTCATTTTGTAGGTGCACATGTTCATATGATTTTGGATGTGTCATAGTCATACACTATAAAAAGTATTGTAACCTATTTTATTAAATTTTCATATTTTCTTTAGTTCCTGTTTAATGTTATGGATTATAAAATGGTAGTTTTCACAGTGATCGAAAGGTATTGTAACCCTTTTTTGTTATTGTATATTGAGTATTTAGTTATTTCCCAAGTGTTTTCCTTGAGCTAACGTATAAATATTATTAATATCTGCAATTATTGGTGGTTCCTTTATTATATTTTCCCCCCTTTCCGATTTATGTCACCTTTATTATAGAAATATAGGATAATATTTTTTATTAGACTCCTGTTCACGTGTCAGTGAAGTGAAAGCTAAATTACTTGTAGCCCCAGGCATTTTGGTTTGAGTTTATTGTCATTTCTGCCTTTGGGCATGCCTGAACTGAAATACTTGGTAGGTTAAATTTTAAGATATGATGGTCTAGCTTTGGCCTGCCCCCTTACTTTAATGAACAAGAGAATGTGGAGAATGTCAATTTTGCTTGGAAGAAAAAAATGAACACCATGATCCAAAATGAGAACTGACATGACTGCTTTTATTGCATTTTATTGTAGATCTTGTTGTCAGTTGCAGCACTTTTTTTTGAATATATGTTTTTTAGAATTTTACATTTGTTTATCAATAATTTGTTTGTTTAGTTTTTAGTTTTTGGGGCCATGTTTGAAAAGATTACCAAAGTTTAGAAGTCAAATGAGATTTGAAAACTGTTTAGAATTGCACCAACTATAAAAGTAGATTACAAAGAAAGTTCATAGTTTCTCTTCAAGCATAATTTTGAAAACAGAAGAAAAATCGTTATTGGGATTACGTTTTGTTTGTCTTGTTCTTGTGCTTCTATTGTTTTGAGACTTCTAATTCTTATATTTTATGGTGTGGCTTAATCTGTAATAAATGTATTGCATGGCATGCTTGAAATTTTCAAGCCGTAATTTCTTTTTGAAAAGAATTAATGATTGAAAGTTACTTCTTTGAGAAAGACGGTGTTTACTAGTCCTGAGAGGCATTCATTTTTTTGTGGGTAGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAATGGTTTCTGTCAAAATTCAAGAATCTAAATCCCTCCTTTATCTTATTTTGGCTCCAAGCTCCTATCGGAAGTTGCCCATTAGTTTTACTATTCTTTGTATCATAATAATATGAATTTGTTTATTTCCTATTATGTTTACCCTTTTTATTGGTTGTGAATCTGTATTTGATGTAAAATATATACATTTGTTTGTCTGTGTATAATAAAAATAAATATCTTTCTTTGGCTGCCTT

mRNA sequence

ATGTCAGGAAGATCGAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGAGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCCGGCAAGCCAAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTAATCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTGTCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCGTATATTGTTCCAGGTTACTCTAATGAAATATCTCAGCATTCCAATCACTTGTCAACGTCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTGGAAGCGGTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGAGAAGTTGTATCGCTTTGTTGGATGCAAATGGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAATGGTTTCTGTCAAAATTCAAGAATCTAAATCCCTCCTTTATCTTATTTTGGCTCCAAGCTCCTATCGGAAGTTGCCCATTAGTTTTACTATTCTTTGTATCATAATAATATGAATTTGTTTATTTCCTATTATGTTTACCCTTTTTATTGGTTGTGAATCTGTATTTGATGTAAAATATATACATTTGTTTGTCTGTGTATAATAAAAATAAATATCTTTCTTTGGCTGCCTT

Coding sequence (CDS)

ATGTCAGGAAGATCGAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGAGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCCGGCAAGCCAAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTAATCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTGTCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCGTATATTGTTCCAGGTTACTCTAATGAAATATCTCAGCATTCCAATCACTTGTCAACGTCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTGGAAGCGGTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGAGAAGTTGTATCGCTTTGTTGGATGCAAATGGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAATGGTTTCTGTCAAAATTCAAGAATCTAA

Protein sequence

MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEISQHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQPKSRRHEKLYRFVGCKWIKHLVIRLVAVLSEDHYNGFCQNSRI

Homology

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BLAST of CaUC08G142030.1 vs. NCBI nr
Match: XP_038890486.1 (RNA-binding protein 7-like [Benincasa hispida])

HSP 1 Score: 344.0 bits (881), Expect = 9.9e-91
Identity = 175/190 (92.11%), Postives = 183/190 (96.32%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCTVYVGNLDER+SDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAF VYE+EE
Sbjct: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           ITNYAVKLFS LVTL+NRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRS+IV GYS EIS
Sbjct: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
           Q+S+HLSTSCRFSTYPE+HVEA+LYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ
Sbjct: 121 QYSSHLSTSCRFSTYPEDHVEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180

Query: 181 PKSRRHEKLY 191
           PKSRRH   Y
Sbjct: 181 PKSRRHVTSY 189

[Close]

BLAST of CaUC08G142030.1 vs. NCBI nr
Match: XP_022932504.1 (RNA-binding protein 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 8.1e-85
Identity = 161/190 (84.74%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           ITNYAVKLFS LVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
            +SN LS SCRFS YPENHVEA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHEKLY 191
           PKSRRH+  Y
Sbjct: 181 PKSRRHDTSY 190

[Close]

BLAST of CaUC08G142030.1 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           ITNYAVKLFS LVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
            +SN LS SCRFS YPENH+EA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHEKLY 191
           PKSRRH+  Y
Sbjct: 181 PKSRRHDTSY 190

[Close]

BLAST of CaUC08G142030.1 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCT+YVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFA YE+EE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           I NYAVKLFS LV LHNRTLKFAVSGQDK SP S+AITSSS +S+KSRS I  GYSNEIS
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSS-ISNKSRSQIFSGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
           Q+SN  STSCRF+TYPENH+EA+LYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDS NQ
Sbjct: 121 QYSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQ 180

Query: 181 PKSRRHE 188
           PKSRR +
Sbjct: 181 PKSRRRD 186

[Close]

BLAST of CaUC08G142030.1 vs. NCBI nr
Match: XP_023523852.1 (RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-83
Identity = 159/190 (83.68%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           ITNYAVKLFS LVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
            +SN LS SCRFS Y ENH+EA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYRENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHEKLY 191
           PKSRRH+  Y
Sbjct: 181 PKSRRHDTSY 190

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-12
Identity = 31/81 (38.27%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
          +S R+   TVYVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F  + +EE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSNLVTLHNRTLK 82
            +YA+K+  N++ L+ + ++
Sbjct: 66 DADYAIKIM-NMIKLYGKPIR 85

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-12
Identity = 31/81 (38.27%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
          +S R+   TVYVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F  + +EE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSNLVTLHNRTLK 82
            +YA+K+  N++ L+ + ++
Sbjct: 66 DADYAIKIM-NMIKLYGKPIR 85

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-12
Identity = 31/81 (38.27%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
          +S R+   TVYVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F  + +EE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 ITNYAVKLFSNLVTLHNRTLK 82
            +YA+K+  N++ L+ + ++
Sbjct: 66 DADYAIKIM-NMIKLYGKPIR 85

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 29/78 (37.18%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 4  RSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITN 63
          R+   T+YVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F  +  EE  +
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSNLVTLHNRTLK 82
          YA+K+  N++ L+ + +K
Sbjct: 69 YAIKIL-NMIKLYGKPIK 85

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 4  RSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITN 63
          R+   T+Y+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F  + +E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSNLVTLHNRTLKFAVSGQDK 90
          YA ++  N V L  + ++   + QD+
Sbjct: 67 YACQIL-NQVKLFGKPIRVNRASQDR 91

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.9e-85
Identity = 161/190 (84.74%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           ITNYAVKLFS LVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
            +SN LS SCRFS YPENHVEA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHEKLY 191
           PKSRRH+  Y
Sbjct: 181 PKSRRHDTSY 190

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.7e-85
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           ITNYAVKLFS LVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
            +SN LS SCRFS YPENH+EA  YPGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHEKLY 191
           PKSRRH+  Y
Sbjct: 181 PKSRRHDTSY 190

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy TrEMBL
Match: A0A6J1I7S0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472063 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.4e-81
Identity = 159/191 (83.25%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MSGR-SNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENE 60
           MSGR SN CT+YVGNLDERV+D+VLYDILIQAGRVVDLH+PRDKESGKPKGFAFA YENE
Sbjct: 1   MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENE 60

Query: 61  EITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEI 120
           +ITNYA+KLFS LVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHKSRS+IV  YSNE 
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNET 120

Query: 121 SQHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFN 180
           SQ+SN LSTSCRFS YPENH EA+LYPGLV+QYNG G HLDNYN E SQRYS TTLDSF 
Sbjct: 121 SQYSNRLSTSCRFSAYPENHQEALLYPGLVDQYNGCGFHLDNYNNEQSQRYSRTTLDSFY 180

Query: 181 QPKSRRHEKLY 191
           Q KSRRH+  Y
Sbjct: 181 QTKSRRHDTSY 191

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy TrEMBL
Match: A0A5A7TCE4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00930 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.5e-81
Identity = 160/190 (84.21%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSG SN CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK+SGKPKGFAFAVYE+EE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           I NYAVKLFS LV+LH+R LKFAVSGQDKSSP++SA+TSSSNVSHKSRS+   GYSNEIS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
           Q+SNH ST CR  TYPENHV+A+LY GLVNQYNGYGSH+DNYNKEYSQRY GTTLDSF Q
Sbjct: 121 QYSNHPSTLCR--TYPENHVQALLYLGLVNQYNGYGSHMDNYNKEYSQRYRGTTLDSFKQ 180

Query: 181 PKSRRHEKLY 191
           PKSRRH   Y
Sbjct: 181 PKSRRHVTSY 185

[Close]

BLAST of CaUC08G142030.1 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.7e-80
Identity = 157/190 (82.63%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSGRS GCT+YVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFA YE+EE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEIS 120
           I NYAVKLFS LV LH RTLKFAVSGQDK SP S+AITSS      SRS IV GYSNEIS
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSS------SRSQIVSGYSNEIS 120

Query: 121 QHSNHLSTSCRFSTYPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180
           Q+SN  S+SCRF TYPENH+EA+L PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDSFNQ
Sbjct: 121 QYSNRFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQ 180

Query: 181 PKSRRHEKLY 191
           PKSRRH+  +
Sbjct: 181 PKSRRHDSSF 184

[Close]

BLAST of CaUC08G142030.1 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-39
Identity = 101/195 (51.79%), Postives = 129/195 (66.15%), Query Frame = 0


Query: 1   MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEE 60
           MSG SN CTVY+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFA YE EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  ITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSR-SYIVPGYSNEI 120
           I +YAVKLFS LV+L+NRTLKFA+SGQDK        ++S+N  H++R   +   +S+  
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ------SNSANSGHRARPQSLAFEHSDRA 120

Query: 121 SQHSNHLSTSCRFST--------YPENHVEAVLYPGLVNQYNGYGSHLDNYNKEYSQRYS 180
           + H  HL    RFS+         P ++ +    PG+ N     G+ L     EYS+R  
Sbjct: 121 AYH--HLE---RFSSQLISPPSPLPLDYTQEPPPPGVSN-----GASL-----EYSRRVL 173

Query: 181 GTTLDSFNQPKSRRH 187
           G+ LDS N  + RR+
Sbjct: 181 GSALDSINHSRPRRY 173

[Close]

BLAST of CaUC08G142030.1 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-13
Identity = 31/88 (35.23%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 4   RSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITN 63
           R+   TVYVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F  Y +EE  +
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSNLVTLHNRTLKFAVSGQDKSS 92
           YA+K+  N++ LH + ++   + QDK S
Sbjct: 81  YAIKVL-NMIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of CaUC08G142030.1 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-08
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 2   SGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEI 61
           SG  +G  VYVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y++ + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  TNYAVK 68
              A+K
Sbjct: 258 VQNAIK 263

[Close]

BLAST of CaUC08G142030.1 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 33/97 (34.02%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 6   NGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITNYA 65
           N   VYVG +   +++  L  +  Q G +VD+++ RDK +GK KGFAF  YE++  T  A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 66  VKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSN 103
           V   +  + L  RT+K    G  K        T   N
Sbjct: 94  VDNLNGALVL-GRTIKVDHCGAYKKHEEEDEETRRQN 129

[Close]

BLAST of CaUC08G142030.1 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 5   SNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITNY 64
           S+  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++  + 
Sbjct: 13  SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65  AV-KLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRS 110
           AV +L   +V     T++FA  G +    S   +      S +SRS
Sbjct: 73  AVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRS 118

The following BLAST results are available for this feature:

BLAST of CaUC08G142030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890486.1	9.9e-91	92.11	RNA-binding protein 7-like [Benincasa hispida]	[more]
XP_022932504.1	8.1e-85	84.74	RNA-binding protein 7 isoform X1 [Cucurbita moschata]	[more]
XP_022973396.1	1.8e-84	84.21	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]
XP_038890192.1	1.2e-83	86.10	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]
XP_023523852.1	2.0e-83	83.68	RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC08G142030.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	3.3e-12	38.27	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	3.3e-12	38.27	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	3.3e-12	38.27	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	1.2e-11	37.18	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	1.6e-11	37.21	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CaUC08G142030.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EX61	3.9e-85	84.74	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A6J1I8J0	8.7e-85	84.21	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1I7S0	3.4e-81	83.25	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147206...	[more]
A0A5A7TCE4	4.5e-81	84.21	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CAZ4	1.7e-80	82.63	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]

BLAST of CaUC08G142030.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	1.9e-39	51.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	5.2e-13	35.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	6.5e-08	37.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G47120.1	1.2e-06	34.02	RNA recognition motif (RRM)-containing protein	[more]
AT5G64200.1	1.4e-05	31.13	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 2.4E-15 score: 67.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..80 e-value: 2.1E-12 score: 46.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 13.890656
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..95 e-value: 7.8E-18 score: 66.5
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..190
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..190
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC08G142030	CaUC08G142030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC08G142030.1-exon	CaUC08G142030.1-exon-Ciama_Chr08:2206608..2206644	exon
CaUC08G142030.1-exon	CaUC08G142030.1-exon-Ciama_Chr08:2207548..2207759	exon
CaUC08G142030.1-exon	CaUC08G142030.1-exon-Ciama_Chr08:2212621..2212795	exon
CaUC08G142030.1-exon	CaUC08G142030.1-exon-Ciama_Chr08:2212915..2213048	exon
CaUC08G142030.1-exon	CaUC08G142030.1-exon-Ciama_Chr08:2213148..2213180	exon
CaUC08G142030.1-exon	CaUC08G142030.1-exon-Ciama_Chr08:2214317..2214602	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC08G142030.1-cds	CaUC08G142030.1-cds-Ciama_Chr08:2206608..2206644	CDS
CaUC08G142030.1-cds	CaUC08G142030.1-cds-Ciama_Chr08:2207548..2207759	CDS
CaUC08G142030.1-cds	CaUC08G142030.1-cds-Ciama_Chr08:2212621..2212795	CDS
CaUC08G142030.1-cds	CaUC08G142030.1-cds-Ciama_Chr08:2212915..2213048	CDS
CaUC08G142030.1-cds	CaUC08G142030.1-cds-Ciama_Chr08:2213148..2213180	CDS
CaUC08G142030.1-cds	CaUC08G142030.1-cds-Ciama_Chr08:2214317..2214397	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC08G142030.1-three_prime_utr	CaUC08G142030.1-three_prime_utr-Ciama_Chr08:2214398..2214602	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC08G142030.1	CaUC08G142030.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding