CaUC06G115560.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G115560.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr06: 13430996 .. 13432277 (+)
Sequence length	1187
RNA-Seq Expression	CaUC06G115560.1
Synteny	CaUC06G115560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCTCTACCTGAGTTATTCCATTCCCCTCGCCCATGTTGTCTGTCACTTGCAGTTCAAATTCCTTTGCCATGGTCTGTTCCTCGATACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGGCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGGTACACACTAGTTAACTGTTTTATGATTTTAATTTTTAAACATGTTTTGAGTTTATGTATAATGTAATCATTTTCTCTCATCCTTGGTTGTGTAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAAATGAAAAAAGGCTGTTTCCATTTGCTTGAAAGATGAGCTAAGGCAGCAAATTGCCATTCTATTTTAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTGACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAAGTAGAAACTCGAGTGCAGGTCAACATGAGAAAATTTATCAACCAATGCATATGATATAATAATTCTTATTATGTTTTAAATCAATAACCCTGAACACATATTTGGCTATACACACACAGAGCATCATTGAGAAAAAGTAATCAAGTTAGCAGATCAGAATGGGCTAACATTACGTGCTAACTTCAACAATAACTCCGGTACAAGGCGCCTCCTTCGGCGAGCCACTGCATCTGTGGCAAGAGCATCCCTATCATTTTCATGAATGATGAAAATCAAATCTTCAACCAACTGATCTTTACCACCTCTCATTGGATCCTATGTTAGAATTTGAGAAAAATTTTAGAACCCAACACCTAGGCATAATAAGCTTAATATGTTTGTGATATAATAAAAAGGCAGAGGGGTAATGGCAATTTACTTTTATTACAGCACCAATAGGAGCCTACAAAAATGTTTTGCTCTCACCTGGACAAACAAATCTGTATGCGTCTTTCCTTTGTAAAGAACTGTTTCAACTTTTACTCCAAGTCTTTCAAGCACCTCTGCAAAGCTCTTACTACACAAGAATTAAAACACGAAATAATGTAATGCATGTCTGCAGAAATATTGGCATACCTCTACC

mRNA sequence

GTCCTCTACCTGAGTTATTCCATTCCCCTCGCCCATGTTGTCTGTCACTTGCAGTTCAAATTCCTTTGCCATGGTCTGTTCCTCGATACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGGCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAAATGAAAAAAGGCTGTTTCCATTTGCTTGAAAGATGAGCTAAGGCAGCAAATTGCCATTCTATTTTAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTGACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAAGTAGAAACTCGAGTGCAGGTCAACATGAGAAAATTTATCAACCAATGCATATGATATAATAATTCTTATTATGTTTTAAATCAATAACCCTGAACACATATTTGGCTATACACACACAGAGCATCATTGAGAAAAAGTAATCAAGTTAGCAGATCAGAATGGGCTAACATTACGTGCTAACTTCAACAATAACTCCGGTACAAGGCGCCTCCTTCGGCGAGCCACTGCATCTGTGGCAAGAGCATCCCTATCATTTTCATGAATGATGAAAATCAAATCTTCAACCAACTGATCTTTACCACCTCTCATTGGATCCTATGTTAGAATTTGAGAAAAATTTTAGAACCCAACACCTAGGCATAATAAGCTTAATATGTTTGTGATATAATAAAAAGGCAGAGGGGTAATGGCAATTTACTTTTATTACAGCACCAATAGGAGCCTACAAAAATGTTTTGCTCTCACCTGGACAAACAAATCTGTATGCGTCTTTCCTTTGTAAAGAACTGTTTCAACTTTTACTCCAAGTCTTTCAAGCACCTCTGCAAAGCTCTTACTACACAAGAATTAAAACACGAAATAATGTAATGCATGTCTGCAGAAATATTGGCATACCTCTACC

Coding sequence (CDS)

ATGTTGTCTGTCACTTGCAGTTCAAATTCCTTTGCCATGGTCTGTTCCTCGATACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGGCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAA

Protein sequence

MLSVTCSSNSFAMVCSSILETRCYIRALKHRQNPTHQFIQLSLQILTISLQQVGSRSTSMASLKAEKPAQQVGQSKKEAKPSDTAVKASASKSNSASKKPAQRSQDPPKKRKGGKSAVKH

Homology

The following BLAST results are available for this feature:

BLAST of CaUC06G115560.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G115560.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G115560.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G115560.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC06G115560	CaUC06G115560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC06G115560.1-exon	CaUC06G115560.1-exon-Ciama_Chr06:13430996..13431359	exon
CaUC06G115560.1-exon	CaUC06G115560.1-exon-Ciama_Chr06:13431455..13432277	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC06G115560.1-five_prime_utr	CaUC06G115560.1-five_prime_utr-Ciama_Chr06:13430996..13431029	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC06G115560.1-cds	CaUC06G115560.1-cds-Ciama_Chr06:13431030..13431359	CDS
CaUC06G115560.1-cds	CaUC06G115560.1-cds-Ciama_Chr06:13431455..13431487	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC06G115560.1-three_prime_utr	CaUC06G115560.1-three_prime_utr-Ciama_Chr06:13431488..13432277	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC06G115560.1	CaUC06G115560.1-protein	polypeptide