CaUC06G115560 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G115560
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr06: 13430996 .. 13432277 (+)
RNA-Seq Expression	CaUC06G115560
Synteny	CaUC06G115560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCTCTACCTGAGTTATTCCATTCCCCTCGCCCATGTTGTCTGTCACTTGCAGTTCAAATTCCTTTGCCATGGTCTGTTCCTCGATACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGGCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGGTACACACTAGTTAACTGTTTTATGATTTTAATTTTTAAACATGTTTTGAGTTTATGTATAATGTAATCATTTTCTCTCATCCTTGGTTGTGTAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAAATGAAAAAAGGCTGTTTCCATTTGCTTGAAAGATGAGCTAAGGCAGCAAATTGCCATTCTATTTTAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTGACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAAGTAGAAACTCGAGTGCAGGTCAACATGAGAAAATTTATCAACCAATGCATATGATATAATAATTCTTATTATGTTTTAAATCAATAACCCTGAACACATATTTGGCTATACACACACAGAGCATCATTGAGAAAAAGTAATCAAGTTAGCAGATCAGAATGGGCTAACATTACGTGCTAACTTCAACAATAACTCCGGTACAAGGCGCCTCCTTCGGCGAGCCACTGCATCTGTGGCAAGAGCATCCCTATCATTTTCATGAATGATGAAAATCAAATCTTCAACCAACTGATCTTTACCACCTCTCATTGGATCCTATGTTAGAATTTGAGAAAAATTTTAGAACCCAACACCTAGGCATAATAAGCTTAATATGTTTGTGATATAATAAAAAGGCAGAGGGGTAATGGCAATTTACTTTTATTACAGCACCAATAGGAGCCTACAAAAATGTTTTGCTCTCACCTGGACAAACAAATCTGTATGCGTCTTTCCTTTGTAAAGAACTGTTTCAACTTTTACTCCAAGTCTTTCAAGCACCTCTGCAAAGCTCTTACTACACAAGAATTAAAACACGAAATAATGTAATGCATGTCTGCAGAAATATTGGCATACCTCTACC

mRNA sequence

GTCCTCTACCTGAGTTATTCCATTCCCCTCGCCCATGTTGTCTGTCACTTGCAGTTCAAATTCCTTTGCCATGGTCTGTTCCTCGATACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGGCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAAATGAAAAAAGGCTGTTTCCATTTGCTTGAAAGATGAGCTAAGGCAGCAAATTGCCATTCTATTTTAGTCTGCTTTGTTATGTTTATCGTTGTATTTTAATCAGTGTGACAAGAGAGGAGCTCTCATATCTGAAATAAAAATAGGTTTCACTTACATAGCCACAAAGAAGTAGAAACTCGAGTGCAGGTCAACATGAGAAAATTTATCAACCAATGCATATGATATAATAATTCTTATTATGTTTTAAATCAATAACCCTGAACACATATTTGGCTATACACACACAGAGCATCATTGAGAAAAAGTAATCAAGTTAGCAGATCAGAATGGGCTAACATTACGTGCTAACTTCAACAATAACTCCGGTACAAGGCGCCTCCTTCGGCGAGCCACTGCATCTGTGGCAAGAGCATCCCTATCATTTTCATGAATGATGAAAATCAAATCTTCAACCAACTGATCTTTACCACCTCTCATTGGATCCTATGTTAGAATTTGAGAAAAATTTTAGAACCCAACACCTAGGCATAATAAGCTTAATATGTTTGTGATATAATAAAAAGGCAGAGGGGTAATGGCAATTTACTTTTATTACAGCACCAATAGGAGCCTACAAAAATGTTTTGCTCTCACCTGGACAAACAAATCTGTATGCGTCTTTCCTTTGTAAAGAACTGTTTCAACTTTTACTCCAAGTCTTTCAAGCACCTCTGCAAAGCTCTTACTACACAAGAATTAAAACACGAAATAATGTAATGCATGTCTGCAGAAATATTGGCATACCTCTACC

Coding sequence (CDS)

ATGTTGTCTGTCACTTGCAGTTCAAATTCCTTTGCCATGGTCTGTTCCTCGATACTCGAGACTCGCTGCTATATAAGAGCATTGAAACACAGGCAAAACCCAACCCACCAATTCATTCAGCTTAGTCTTCAGATACTTACAATATCTCTTCAGCAAGTTGGTTCCAGGAGCACCTCCATGGCGTCTTTGAAGGCTGAAAAACCTGCTCAACAAGTTGGGCAGTCTAAGAAGGAAGCTAAACCTAGCGATACTGCAGTGAAAGCTTCGGCCTCGAAGTCCAATTCAGCCTCGAAGAAGCCTGCTCAAAGATCTCAAGATCCCCCTAAAAAGAGGAAAGGGGGCAAGTCTGCTGTAAAGCATTAA

Protein sequence

MLSVTCSSNSFAMVCSSILETRCYIRALKHRQNPTHQFIQLSLQILTISLQQVGSRSTSMASLKAEKPAQQVGQSKKEAKPSDTAVKASASKSNSASKKPAQRSQDPPKKRKGGKSAVKH

Homology

The following BLAST results are available for this feature:

BLAST of CaUC06G115560 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G115560 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G115560 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G115560 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G115560.1	CaUC06G115560.1	mRNA