CaUC06G109670.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G109670.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr06: 3911415 .. 3912144 (+)
Sequence length	408
RNA-Seq Expression	CaUC06G109670.1
Synteny	CaUC06G109670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCAGCATTACTAGGAATCATGGAAGTGTTGGAATGCATGAGGCATCAAGAGCAAAATGGAAATGGGATCGTGAAGCATGAAAACGATGGAAAAAAGAGTTGACTTGAAAACGGTGGGAAAAAAATGAATTTGATATTACAAATTGGGCTCAAAATGCTCAATCGAGACATGGGTTCTAAATTACACTACACCCAATCTCATTCCAAACTTGACCCCAAACAGCCTCGATATGTTTTTTAAATCTACATTTAACAGTTATTACGAGACATTAATGTGTTGAATGGTTCCTAGTTAGTGGAACAAGAAAGATATGCATCAATATTAGATACACAATCAAAGAATTTCCCTCAAGGAAGAATAAATTTGTCCCCACATGGGCGTTGAAGTTGGATACTTGAGAAAGAAGCAAATTGAGACAGGTCGTCATCACAAGCAATCAAATTCTTCAAATGCCACCAACTTGGGTACCACGGAAGGCCACTTGTATAAGAAGGCACATAAACAGAGTAATGAGTGCATCAAAATGAACTCAGTGATGAACATAAGGCCAGTAGTTATATTTGTAGCAGGAGCCATGTTCGGTTCGCTGCTGACTCGATCCTTTCCGCGCTGCCACCACCACCTCCACCAACTCCGCCGATGCTACAGCCGTGGTGCTGAAACCAGCTTCACCAAGCAACCAAGTATGGAGTCTAGTGGAGGAGAAATTAGGAATGTTGATTAA

mRNA sequence

ATGTCCTCAGCATTACTAGGAATCATGGAAGTGTTGGAATGCATGAGGCATCAAGAGCAAAATGGAAATGGGATCGTGAAGCATGAAAACGATGGAAAAAAGAGTCGTCATCACAAGCAATCAAATTCTTCAAATGCCACCAACTTGGGTACCACGGAAGGCCACTTGTATAAGAAGGCACATAAACAGAGTAATGAGTGCATCAAAATGAACTCAGTGATGAACATAAGGCCAGTAGTTATATTTGTAGCAGGAGCCATGTTCGGTTCGCTGCTGACTCGATCCTTTCCGCGCTGCCACCACCACCTCCACCAACTCCGCCGATGCTACAGCCGTGGTGCTGAAACCAGCTTCACCAAGCAACCAAGTATGGAGTCTAGTGGAGGAGAAATTAGGAATGTTGATTAA

Coding sequence (CDS)

ATGTCCTCAGCATTACTAGGAATCATGGAAGTGTTGGAATGCATGAGGCATCAAGAGCAAAATGGAAATGGGATCGTGAAGCATGAAAACGATGGAAAAAAGAGTCGTCATCACAAGCAATCAAATTCTTCAAATGCCACCAACTTGGGTACCACGGAAGGCCACTTGTATAAGAAGGCACATAAACAGAGTAATGAGTGCATCAAAATGAACTCAGTGATGAACATAAGGCCAGTAGTTATATTTGTAGCAGGAGCCATGTTCGGTTCGCTGCTGACTCGATCCTTTCCGCGCTGCCACCACCACCTCCACCAACTCCGCCGATGCTACAGCCGTGGTGCTGAAACCAGCTTCACCAAGCAACCAAGTATGGAGTCTAGTGGAGGAGAAATTAGGAATGTTGATTAA

Protein sequence

MSSALLGIMEVLECMRHQEQNGNGIVKHENDGKKSRHHKQSNSSNATNLGTTEGHLYKKAHKQSNECIKMNSVMNIRPVVIFVAGAMFGSLLTRSFPRCHHHLHQLRRCYSRGAETSFTKQPSMESSGGEIRNVD

Homology

The following BLAST results are available for this feature:

BLAST of CaUC06G109670.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G109670.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G109670.1 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC06G109670.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC06G109670	CaUC06G109670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC06G109670.1-exon	CaUC06G109670.1-exon-Ciama_Chr06:3911415..3911517	exon
CaUC06G109670.1-exon	CaUC06G109670.1-exon-Ciama_Chr06:3911840..3912144	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC06G109670.1-cds	CaUC06G109670.1-cds-Ciama_Chr06:3911415..3911517	CDS
CaUC06G109670.1-cds	CaUC06G109670.1-cds-Ciama_Chr06:3911840..3912144	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC06G109670.1	CaUC06G109670.1-protein	polypeptide