CaUC05G086610.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G086610.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 6684056 .. 6684753 (-)
Sequence length462
RNA-Seq ExpressionCaUC05G086610.1
SyntenyCaUC05G086610.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGAAGTTTAAGGACTAATTTTAACCATGAAAATTAAATTTGAGAATGTGATTACAACTGCCACCCATAACAAAATACTAAGCTCTTAATACTCACTCCGGCGGCCCTATGCAGCCACGCGCTTCTCCGACGAATAGACCCACCAGCAGCGACAACTCGACCGAACCCAACATCGGGAACTTCCCGAGAACCTCCATCCACCGACGGGAATCCGGCAACCCACACGAAGTTTCGGATCCAGGGAATAGCTTCAGATCCGGCGAGGCAGAGCGGACCATGGATGAAGCCCCACGAAGAGTACACGCGTGCACTTCCGATCGACGGCCACCCACTACCGCAGTAGACTCCGGTGCTTCACGGCGATGGCCGATTTTCCTGCACCGAAACAGTGGCCTTCAAGGTAAAGAGGGCTGCTTCATCGAAGAAGATGAAGAGAAGATTGGAGGGAGAAGTCGAAGTCGAAGAAGAAGTGGAGAAAAGAAATTCGGAAAAGTGATGGGCCCATTCATTATTATTATTATTATTATTTTATTTTCTCTGTTTAATATTTATCCTAAAAAGTTCTATTAAAAAAAAAAGAAATTTTTTTTTATCAGGCGCTTGCAATATGATAGTCCGAAGGAAACGGCCAGAAATGGAAGAATCTGATCGATCGCAGCCGTCCGATGTGTTCTCTCTCTACAGTTCCCGGTGA

mRNA sequence

ATGCTAGAACCACGCGCTTCTCCGACGAATAGACCCACCAGCAGCGACAACTCGACCGAACCCAACATCGGGAACTTCCCGAGAACCTCCATCCACCGACGGGAATCCGGCAACCCACACGAAGTTTCGGATCCAGGGAATAGCTTCAGATCCGGCGAGGCAGAGCGGACCATGGATGAAGCCCCACGAAGAGTACACGCGTGCACTTCCGATCGACGGCCACCCACTACCGCAGTAGACTCCGGTGCTTCACGGCGATGGCCGATTTTCCTGCACCGAAACAGTGGCCTTCAAGGTAAAGAGGGCTGCTTCATCGAAGAAGATGAAGAGAAGATTGGAGGGAGAAGTCGAAGTCGAAGAAGAAGCGCTTGCAATATGATAGTCCGAAGGAAACGGCCAGAAATGGAAGAATCTGATCGATCGCAGCCGTCCGATGTGTTCTCTCTCTACAGTTCCCGGTGA

Coding sequence (CDS)

ATGCTAGAACCACGCGCTTCTCCGACGAATAGACCCACCAGCAGCGACAACTCGACCGAACCCAACATCGGGAACTTCCCGAGAACCTCCATCCACCGACGGGAATCCGGCAACCCACACGAAGTTTCGGATCCAGGGAATAGCTTCAGATCCGGCGAGGCAGAGCGGACCATGGATGAAGCCCCACGAAGAGTACACGCGTGCACTTCCGATCGACGGCCACCCACTACCGCAGTAGACTCCGGTGCTTCACGGCGATGGCCGATTTTCCTGCACCGAAACAGTGGCCTTCAAGGTAAAGAGGGCTGCTTCATCGAAGAAGATGAAGAGAAGATTGGAGGGAGAAGTCGAAGTCGAAGAAGAAGCGCTTGCAATATGATAGTCCGAAGGAAACGGCCAGAAATGGAAGAATCTGATCGATCGCAGCCGTCCGATGTGTTCTCTCTCTACAGTTCCCGGTGA

Protein sequence

MLEPRASPTNRPTSSDNSTEPNIGNFPRTSIHRRESGNPHEVSDPGNSFRSGEAERTMDEAPRRVHACTSDRRPPTTAVDSGASRRWPIFLHRNSGLQGKEGCFIEEDEEKIGGRSRSRRRSACNMIVRRKRPEMEESDRSQPSDVFSLYSSR
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC05G086610CaUC05G086610gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC05G086610.1-exonCaUC05G086610.1-exon-Ciama_Chr05:6684056..6684153exon
CaUC05G086610.1-exonCaUC05G086610.1-exon-Ciama_Chr05:6684281..6684635exon
CaUC05G086610.1-exonCaUC05G086610.1-exon-Ciama_Chr05:6684745..6684753exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC05G086610.1-cdsCaUC05G086610.1-cds-Ciama_Chr05:6684056..6684153CDS
CaUC05G086610.1-cdsCaUC05G086610.1-cds-Ciama_Chr05:6684281..6684635CDS
CaUC05G086610.1-cdsCaUC05G086610.1-cds-Ciama_Chr05:6684745..6684753CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC05G086610.1CaUC05G086610.1-proteinpolypeptide