CaUC02G048190.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G048190.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	E3 ubiquitin-protein ligase RNF13 isoform X2
Location	Ciama_Chr02: 36037140 .. 36038602 (+)
Sequence length	279
RNA-Seq Expression	CaUC02G048190.1
Synteny	CaUC02G048190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGGTTGGACCAACCAAGCTTGATTGCAAGACAAGAATTTTCAGGTGATATTTAAATCTTTGGTGATGAAGAAGTTGGTCTCGTTGGTGAGCTGAAACGTGTTTTGACTTTTCTCTGGGAAGGAAAGACTTATTTGGTATTACTCTAAATTCCAGGAATATTGGCCTAAAATTTTTAACTTTGTCCGGATCCAGAAGGCTGCGGCCGAGCAAGGCCAAGCACAACTTTCGGAGTTTGCACGGATGATCCAATTAAATAGAAAAAGGTCAAATTACTTCTGAATTATAGTACTACTTTCAATTGTAAAAATTAGACCATCAAACTTACAATATTTATAGAAATTGGACCCTTAATTGATAAAATTTTGAACCCTAGAACTTATACGATTGTTACAATTTCTACAGTTATGTAAGTTTGAAGATCTAATTTTAACAACGGTATAAATTTGAGGGTTCAATTTTTACGCTTGAGTTTGAGAACTCAAGAGTTAGGCACATAATTTATACAAATTAATGCCAAGGACCATTCAATTTCAAACCCAGTCTTCAAGCTAATTGTCTACTCCTCTTTAATTGCTAACACTTCTCTTTTTACCAAAGTTTCATTGAACCTCTCTCAAGATCCCTAAAATTGAGAGTTTTCTTTGACAAACACATTTATTTCAACTTTTTCAATGAACCCATTGAAGTTCTTATGTAAATCCTCATGAAAACCTTTCGTTCTTTTCTTGCAAAAGCTTTTTGGCAGTTTAAAACAATTCATCACACATGCAAAAGTAGATTGAGCCACACTTCTAACTTAGATTTACAAGTTACGATCTCACCAATTTCAATAATAAGAAGAGAAATATAATACATAGTTAAAGGACTTTAGTTGACACTTTTGTTAAACAACTCATAAATTCAAAGATGAATGTTACAATCTAAGTATACATATATGAATATGATATTTGTTGATGTCAAAATTTAGACTGGTAAAAATGTACCTAACCTTCACTTAACAACAACGATAAATTTGTACTTTAGAGGAGAGAGAACCTGCAAAACAAAGAAAATGGACTCCGATGCCAAAGTTAGAATAATAACTCTAAAATGGGGATCATAAATACCAAAGTAAACATGATATTTTGTTCACTTAACCACTCCATTGCTTGATACGTTCTTATTATTTATGAGTAGACAATTGTAACATCGAGACTCCTTTTGAGGGTGCTTACATAGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTGGAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA

mRNA sequence

ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGTTATGTAAGTTTGAAGATCTAATTTTAACAACGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTGGAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA

Coding sequence (CDS)

ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGTTATGTAAGTTTGAAGATCTAATTTTAACAACGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTGGAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA

Protein sequence

MATTTSLIEREEEECLRMQKLSALRLLLCKFEDLILTTGHHQISESALEGGGDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

Homology

[Close]

BLAST of CaUC02G048190.1 vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 169 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 209

[Close]

BLAST of CaUC02G048190.1 vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 210

[Close]

BLAST of CaUC02G048190.1 vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTG 210

[Close]

BLAST of CaUC02G048190.1 vs. NCBI nr
Match: KAG6570419.1 (hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTG 210

[Close]

BLAST of CaUC02G048190.1 vs. NCBI nr
Match: KAG7010295.1 (hypothetical protein SDJN02_27088, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 143 GDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTG 183

[Close]

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL
Match: A0A6J1JFP2 (uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 169 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 209

[Close]

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 210

[Close]

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL
Match: A0A6J1DGD3 (uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020607 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+PI R   PEFA ASSSRE   K ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPIFRPSVPEFAAASSSREPTKKDASKDKTG 213

[Close]

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHA-SKDKTG 93
           G NGYVRAGRQEA+P+LR EF G SSSRE +TK A SKDKTG
Sbjct: 205 GYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTG 246

[Close]

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL
Match: A0A6J1K158 (uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 52  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG 93
           GDNGYVR GRQEA+P++R   P  AGASSSRE I K ASKDKTG
Sbjct: 170 GDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDASKDKTG 213

The following BLAST results are available for this feature:

BLAST of CaUC02G048190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987030.1	2.3e-09	85.37	uncharacterized protein LOC111484597 [Cucurbita maxima]	[more]
XP_022943783.1	2.3e-09	85.37	uncharacterized protein LOC111448431 [Cucurbita moschata]	[more]
XP_023511780.1	3.9e-09	85.37	uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]	[more]
KAG6570419.1	3.9e-09	85.37	hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010295.1	3.9e-09	85.37	hypothetical protein SDJN02_27088, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CaUC02G048190.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JFP2	1.1e-09	85.37	uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597...	[more]
A0A6J1FXD4	1.1e-09	85.37	uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1DGD3	1.1e-06	77.27	uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0KK15	3.3e-06	76.19	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 P...	[more]
A0A6J1K158	5.7e-06	72.73	uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767...	[more]

BLAST of CaUC02G048190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC02G048190	CaUC02G048190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC02G048190.1-exon	CaUC02G048190.1-exon-Ciama_Chr02:36037140..36037220	exon
CaUC02G048190.1-exon	CaUC02G048190.1-exon-Ciama_Chr02:36037622..36037654	exon
CaUC02G048190.1-exon	CaUC02G048190.1-exon-Ciama_Chr02:36038438..36038602	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC02G048190.1-cds	CaUC02G048190.1-cds-Ciama_Chr02:36037140..36037220	CDS
CaUC02G048190.1-cds	CaUC02G048190.1-cds-Ciama_Chr02:36037622..36037654	CDS
CaUC02G048190.1-cds	CaUC02G048190.1-cds-Ciama_Chr02:36038438..36038602	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC02G048190.1	CaUC02G048190.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding