CaUC02G048190 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G048190
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionE3 ubiquitin-protein ligase RNF13 isoform X2
LocationCiama_Chr02: 36037140 .. 36038602 (+)
RNA-Seq ExpressionCaUC02G048190
SyntenyCaUC02G048190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGGTTGGACCAACCAAGCTTGATTGCAAGACAAGAATTTTCAGGTGATATTTAAATCTTTGGTGATGAAGAAGTTGGTCTCGTTGGTGAGCTGAAACGTGTTTTGACTTTTCTCTGGGAAGGAAAGACTTATTTGGTATTACTCTAAATTCCAGGAATATTGGCCTAAAATTTTTAACTTTGTCCGGATCCAGAAGGCTGCGGCCGAGCAAGGCCAAGCACAACTTTCGGAGTTTGCACGGATGATCCAATTAAATAGAAAAAGGTCAAATTACTTCTGAATTATAGTACTACTTTCAATTGTAAAAATTAGACCATCAAACTTACAATATTTATAGAAATTGGACCCTTAATTGATAAAATTTTGAACCCTAGAACTTATACGATTGTTACAATTTCTACAGTTATGTAAGTTTGAAGATCTAATTTTAACAACGGTATAAATTTGAGGGTTCAATTTTTACGCTTGAGTTTGAGAACTCAAGAGTTAGGCACATAATTTATACAAATTAATGCCAAGGACCATTCAATTTCAAACCCAGTCTTCAAGCTAATTGTCTACTCCTCTTTAATTGCTAACACTTCTCTTTTTACCAAAGTTTCATTGAACCTCTCTCAAGATCCCTAAAATTGAGAGTTTTCTTTGACAAACACATTTATTTCAACTTTTTCAATGAACCCATTGAAGTTCTTATGTAAATCCTCATGAAAACCTTTCGTTCTTTTCTTGCAAAAGCTTTTTGGCAGTTTAAAACAATTCATCACACATGCAAAAGTAGATTGAGCCACACTTCTAACTTAGATTTACAAGTTACGATCTCACCAATTTCAATAATAAGAAGAGAAATATAATACATAGTTAAAGGACTTTAGTTGACACTTTTGTTAAACAACTCATAAATTCAAAGATGAATGTTACAATCTAAGTATACATATATGAATATGATATTTGTTGATGTCAAAATTTAGACTGGTAAAAATGTACCTAACCTTCACTTAACAACAACGATAAATTTGTACTTTAGAGGAGAGAGAACCTGCAAAACAAAGAAAATGGACTCCGATGCCAAAGTTAGAATAATAACTCTAAAATGGGGATCATAAATACCAAAGTAAACATGATATTTTGTTCACTTAACCACTCCATTGCTTGATACGTTCTTATTATTTATGAGTAGACAATTGTAACATCGAGACTCCTTTTGAGGGTGCTTACATAGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTGGAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA

mRNA sequence

ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGTTATGTAAGTTTGAAGATCTAATTTTAACAACGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTGGAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA

Coding sequence (CDS)

ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGTTATGTAAGTTTGAAGATCTAATTTTAACAACGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTGGAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA

Protein sequence

MATTTSLIEREEEECLRMQKLSALRLLLCKFEDLILTTGHHQISESALEGGGDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
Homology
[Close]
BLAST of CaUC02G048190 vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 169 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 209

[Close]
BLAST of CaUC02G048190 vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 210

[Close]
BLAST of CaUC02G048190 vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTG 210

[Close]
BLAST of CaUC02G048190 vs. NCBI nr
Match: KAG6570419.1 (hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTG 210

[Close]
BLAST of CaUC02G048190 vs. NCBI nr
Match: KAG7010295.1 (hypothetical protein SDJN02_27088, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 143 GDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTG 183

[Close]
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match: A0A6J1JFP2 (uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 169 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 209

[Close]
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTG 210

[Close]
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match: A0A6J1DGD3 (uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020607 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG 93
           GDNGYVRAGRQEA+PI R   PEFA ASSSRE   K ASKDKTG
Sbjct: 170 GDNGYVRAGRQEARPIFRPSVPEFAAASSSREPTKKDASKDKTG 213

[Close]
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHA-SKDKTG 93
           G NGYVRAGRQEA+P+LR EF G SSSRE +TK A SKDKTG
Sbjct: 205 GYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTG 246

[Close]
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match: A0A6J1K158 (uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 52  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG 93
           GDNGYVR GRQEA+P++R   P  AGASSSRE I K ASKDKTG
Sbjct: 170 GDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDASKDKTG 213

The following BLAST results are available for this feature:
BLAST of CaUC02G048190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022987030.12.3e-0985.37uncharacterized protein LOC111484597 [Cucurbita maxima][more]
XP_022943783.12.3e-0985.37uncharacterized protein LOC111448431 [Cucurbita moschata][more]
XP_023511780.13.9e-0985.37uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo][more]
KAG6570419.13.9e-0985.37hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010295.13.9e-0985.37hypothetical protein SDJN02_27088, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CaUC02G048190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JFP21.1e-0985.37uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597... [more]
A0A6J1FXD41.1e-0985.37uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484... [more]
A0A6J1DGD31.1e-0677.27uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A0A0KK153.3e-0676.19RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 P... [more]
A0A6J1K1585.7e-0672.73uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767... [more]
BLAST of CaUC02G048190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G048190.1CaUC02G048190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding